View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850_low_16 (Length: 516)
Name: NF7850_low_16
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_low_16 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Original strand, 177388 - 177891
Alignment:
| Q |
1 |
ttgaatcaacacttaccttacccacatgctccatcaaagaaggataaagaaaggcaatacgcaaggtttcttgagctcttcaagaaattgcaaattgaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
177388 |
ttgaatcaacacttaccttacccacatgctccatcaaagaaggataaagaaaagcaatacgcaaggtttcttgagctcttcaagaaattgcaaattgaca |
177487 |
T |
|
| Q |
101 |
ttccattctcggaagccttggagcaaatgccggcgtatgctaagttcatgaaagacatgctttccaagaagaggaaaattcatgatgaagaaaccatcca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
177488 |
ttccattctcggaagccttggagcaaatgccggcgtatgctaagttcatgaaagacatgctttccaagaagaggagaattcatgatgaagaaaccatcca |
177587 |
T |
|
| Q |
201 |
acttgatgctaattgtagtgctatcgtccaacggaggttgccgaagaaagaacaagatccgggaagagtcactctaccggtagctataggcactatcaat |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
177588 |
acttgatgctaattgtagtgctatcatccaacggaggttgccgaagaaagaacaagatccgggaagagtcactctaccggtagctataggcactatcaat |
177687 |
T |
|
| Q |
301 |
gttggtaaggcactacttgaccttggttcaagcataaatctcatgcctttgtccgtcgccaaaagagttggtgatttatgtatcaagcggactaggatga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
177688 |
gttggtaaggcactacttgaccttggttcaagcataaatctcatgcctttgtccgtcgccaaaagagttggtgatttatgtatcaagcggactaggatga |
177787 |
T |
|
| Q |
401 |
ccttgcagttggccgataaatcatttgcaacaccattgggaatagccgaagatgtgcttgttaaagttgataaatttgtattcccggcggattttgtagt |
500 |
Q |
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| T |
177788 |
ccttgcaattggccgataaatcatttgcaacaccattgggaatagccgaagatgtgcttgttaaagttgataaatttgtattcccggcggattttgtagt |
177887 |
T |
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| Q |
501 |
gatg |
504 |
Q |
| |
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|||| |
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| T |
177888 |
gatg |
177891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 1 - 504
Target Start/End: Original strand, 20171009 - 20171512
Alignment:
| Q |
1 |
ttgaatcaacacttaccttacccacatgctccatcaaagaaggataaagaaaggcaatacgcaaggtttcttgagctcttcaagaaattgcaaattgaca |
100 |
Q |
| |
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|||| ||||||||| || || |||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| || |||||||||| |
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| T |
20171009 |
ttgactcaacactttccctatccacatgctccatcaaagaaagaaaaagaaaggcaatacgcaaggtttcttgaactcttcaagaagttacaaattgaca |
20171108 |
T |
|
| Q |
101 |
ttccattctcggaagccttggagcaaatgccggcgtatgctaagttcatgaaagacatgctttccaagaagaggaaaattcatgatgaagaaaccatcca |
200 |
Q |
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||||||| ||||||||||||||||||||| || | ||||| || |||||||||||||| |||| ||||||||||| |||| |||||||||||| |||||| |
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| T |
20171109 |
ttccattttcggaagccttggagcaaatgtcgtcttatgccaaattcatgaaagacattctttacaagaagaggataattaatgatgaagaaatcatcca |
20171208 |
T |
|
| Q |
201 |
acttgatgctaattgtagtgctatcgtccaacggaggttgccgaagaaagaacaagatccgggaagagtcactctaccggtagctataggcactatcaat |
300 |
Q |
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||| ||||| ||||||||||| ||| | ||||| |||||||| |||||||||||||||||||||| ||||||| ||| |||||||||||||||||| || |
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| T |
20171209 |
actcgatgcaaattgtagtgccatcattcaacgaaggttgcccaagaaagaacaagatccgggaaaagtcactttactggtagctataggcactattcat |
20171308 |
T |
|
| Q |
301 |
gttggtaaggcactacttgaccttggttcaagcataaatctcatgcctttgtccgtcgccaaaagagttggtgatttatgtatcaagcggactaggatga |
400 |
Q |
| |
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||||| || |||||||||| ||||| |||||||| || |||||||||||||| || ||||||||||||||||| || ||||| |||||||||||||||| |
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| T |
20171309 |
gttggcaaatcactacttgatcttggctcaagcatcaacctcatgcctttgtctgttgccaaaagagttggtgacttgtgtattaagcggactaggatga |
20171408 |
T |
|
| Q |
401 |
ccttgcagttggccgataaatcatttgcaacaccattgggaatagccgaagatgtgcttgttaaagttgataaatttgtattcccggcggattttgtagt |
500 |
Q |
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| T |
20171409 |
ctttgcaattggccgataaatcctacacaaaaccattgggaatagcggaggatgtgctagtgaaagttgataaatttttcttttcggtggattttgtggt |
20171508 |
T |
|
| Q |
501 |
gatg |
504 |
Q |
| |
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|||| |
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| T |
20171509 |
gatg |
20171512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 26130847 - 26131070
Alignment:
| Q |
6 |
tcaacacttaccttacccacatgctccatcaaagaaggataaagaaaggcaatacgcaaggtttcttgagctcttcaagaaattgcaaattgacattcca |
105 |
Q |
| |
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||||||||| || || |||||||||||| | ||||| | ||||| || |||| |||||||| ||||| | ||||||| |||| |||| | |||||| |
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| T |
26130847 |
tcaacacttgccatatccacatgctccaaccaagaaagc-aaagagcggaaatatgcaaggttccttgatattttcaagagattgaaaatcaatattcca |
26130945 |
T |
|
| Q |
106 |
ttctcggaagccttggagcaaatgccggcgtatgctaagttcatgaaagacatgctttccaagaagaggaaaattcatgatgaagaaaccatccaacttg |
205 |
Q |
| |
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|||||||||||||||||| |||| | | |||||||| ||||| ||| || || |||| ||||||||||| ||||| ||| ||| || |||||| |
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| T |
26130946 |
ttctcggaagccttggagaaaattctgacgtatgcttagttctggaaggaaatcctttataagaagaggaagtacaatgataaagtaacaattcaactta |
26131045 |
T |
|
| Q |
206 |
atgctaattgtagtgctatcgtcca |
230 |
Q |
| |
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|||| ||||||||||| ||| |||| |
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| T |
26131046 |
atgcaaattgtagtgcaatcatcca |
26131070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 314
Target Start/End: Complemental strand, 17788823 - 17788691
Alignment:
| Q |
182 |
atgatgaagaaaccatccaacttgatgctaattgtagtgctatcgtccaacggaggttgccgaagaaagaacaagatccgggaagagtcactctaccggt |
281 |
Q |
| |
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||||||| |||||||| |||||||| || |||||||| || ||| | ||| || |||| || |||||||| |||| ||||||| ||| || ||||||| |
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| T |
17788823 |
atgatgatgaaaccattcaacttgacgccaattgtagcgccatcattcaaaggcggttaccaaagaaagagaaagaaccgggaaaagttacattaccggt |
17788724 |
T |
|
| Q |
282 |
agctataggcactatcaatgttggtaaggcact |
314 |
Q |
| |
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|| || || | ||||||||||||||||||| |
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| T |
17788723 |
ggcaattggtaacgtcaatgttggtaaggcact |
17788691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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