View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850_low_18 (Length: 505)
Name: NF7850_low_18
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 489
Target Start/End: Complemental strand, 34762743 - 34762272
Alignment:
| Q |
18 |
agatcaatggttatgtgatcccagagggagctttgatacttttcaatgtatggcaagtgggaagagatccaaaatattgggaaaaaccattggaatttcg |
117 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34762743 |
agatcaatggttatgtgatcccggagggagctttgatacttttcaatgtatggcaagtgggaagagacccaaaatattgggaaaaaccattggaatttcg |
34762644 |
T |
|
| Q |
118 |
tccagagaggttcttagaaaatgcaagccaaggtgaaggtgaagcagctgcaattgatcttaggggtcaacatttcacacttctaccatttgggtctgga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34762643 |
tccagagaggttcttagaaaatgcaagccaaggtgaaggtgaagcagcttcaattgatcttaggggtcaacatttcacacttctaccatttgggtctgga |
34762544 |
T |
|
| Q |
218 |
agaaggatgtgtcctggagtcaatttggcaacagcaggaatggcaacactactttcatcaattattcagtgttttgatctacaagtaccaggcccacatg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34762543 |
agaaggatgtgtcctggagtcaatttggcaacagcaggaatggcaacactactttcatcaattattcagtgttttgatctacaagtaccaggcccacatg |
34762444 |
T |
|
| Q |
318 |
gacaaatattgaaaggtgatgatgttaaggttagcatggatgagagacctggtcttacggttccaagagcacataatctcatgtgtgttccacttgcaag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34762443 |
gacaaatattgaaaggtgatgatgttaaggttagcatggatgagagacctggtcttacggttccaagagcacataatctcatgtgtgttccacttgcaag |
34762344 |
T |
|
| Q |
418 |
agctggtgttgctgctaaactcctttcctgataaaacatacacgtacaacacaaatgggccatgagtgatgt |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34762343 |
agctggtgttgctgctaaactcctttcctgataaaacatacacgtacaacacaaatggtccatgagtgatgt |
34762272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 53 - 446
Target Start/End: Original strand, 34781486 - 34781873
Alignment:
| Q |
53 |
atacttttcaatgtatggcaagtgggaagagatccaaaatattgggaaaaaccattggaatttcgtccagagaggttcttagaaaatgcaagccaaggtg |
152 |
Q |
| |
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|||||||||||||| ||| |||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
34781486 |
atacttttcaatgtctgggcagtgggaagagacccaaaatattgggtaaagccattggaatttcgtccagagaggttcatagaaaatgtt------ggtg |
34781579 |
T |
|
| Q |
153 |
aaggtgaagcagctgcaattgatcttaggggtcaacatttcacacttctaccatttgggtctggaagaaggatgtgtcctggagtcaatttggcaacagc |
252 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
34781580 |
aaggtgaagcagcttcaattgatcttaggggtcaacatttcacacttctaccatttgggtctggaagaaggatgtgtcctggagtcaatttggctactgc |
34781679 |
T |
|
| Q |
253 |
aggaatggcaacactactttcatcaattattcagtgttttgatctacaagtaccaggcccacatggacaaatattgaaaggtgatgatgttaaggttagc |
352 |
Q |
| |
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||||||||| ||| | || |||| ||||| || || || ||||| |||||||| || | ||||||| |||||||||| |||||| ||| |||||||||| |
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| T |
34781680 |
aggaatggccacaatgattgcatctattatccaatgcttcgatctccaagtacctggtcaacatggagaaatattgaatggtgattatgctaaggttagc |
34781779 |
T |
|
| Q |
353 |
atggatgagagacctggtcttacggttccaagagcacataatctcatgtgtgttccacttgcaagagctggtgttgctgctaaactcctttcct |
446 |
Q |
| |
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||||| |||||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||| || | |||||| ||||||| |
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| T |
34781780 |
atggaagagagacctggtctcacagttccaagggcacataatctcatgtgtgttcctcttgcaagagctggtgtcgcagataaacttctttcct |
34781873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 29 - 457
Target Start/End: Complemental strand, 34754747 - 34754325
Alignment:
| Q |
29 |
tatgtgatcccagagggagctttgatacttttcaatgtatggcaagtgggaagagatccaaaatattgggaaaaaccattggaatttcgtccagagaggt |
128 |
Q |
| |
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|||||||| ||||| ||||| | |||||||||||||| ||| |||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
34754747 |
tatgtgattccagaaggagcactaatacttttcaatgtctgggcagtgggaagagacccaaaatattgggtaaagccattggaatttcgtccagagaggt |
34754648 |
T |
|
| Q |
129 |
tcttagaaaatgcaagccaaggtgaaggtgaagcagctgcaattgatcttaggggtcaacatttcacacttctaccatttgggtctggaagaaggatgtg |
228 |
Q |
| |
|
| ||||||||| |||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||| ||||| || ||||| |
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| T |
34754647 |
ttatagaaaatgtt------ggtgaaggtgaagcagcttcaattgatcttaggggtcagcatttccaacttctaccatttgggtccggaaggagaatgtg |
34754554 |
T |
|
| Q |
229 |
tcctggagtcaatttggcaacagcaggaatggcaacactactttcatcaattattcagtgttttgatctacaagtaccaggcccacatggacaaatattg |
328 |
Q |
| |
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|||||||||||||||||| || ||||||||||| ||||| ||| |||| ||||| ||||| |||||||| || |||||||||||||| |||||||||||| |
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| T |
34754553 |
tcctggagtcaatttggctactgcaggaatggccacactgcttgcatctattatccagtgctttgatctgcaggtaccaggcccacaaggacaaatattg |
34754454 |
T |
|
| Q |
329 |
aaaggtgatgatgttaaggttagcatggatgagagacctggtcttacggttccaagagcacataatctcatgtgtgttccacttgcaagagctggtgttg |
428 |
Q |
| |
|
||||||||||||| |||||||||||||| || || |||||||| || |||||||| ||||||||||||||||||||||||| ||||||||||||| | |
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| T |
34754453 |
aaaggtgatgatgcaaaggttagcatggaagaaaggcctggtctcacagttccaaggacacataatctcatgtgtgttccactcacaagagctggtgtcg |
34754354 |
T |
|
| Q |
429 |
ctgctaaactcctttcctgataaaacata |
457 |
Q |
| |
|
| | |||||| ||||||| ||||||||| |
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| T |
34754353 |
cagataaacttctttcctcctaaaacata |
34754325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 23244639 - 23244718
Alignment:
| Q |
155 |
ggtgaagcagctgcaattgatcttaggggtcaacatttcacacttctaccatttgggtctggaagaaggatgtgtcctgg |
234 |
Q |
| |
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||||||| || | |||||||| ||||||| |||||||| ||||||||||||||| ||||||||||| ||||||||||| |
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| T |
23244639 |
ggtgaaggagattcaattgatgttaggggacaacattttcaacttctaccatttggatctggaagaagaatgtgtcctgg |
23244718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 9381276 - 9381242
Alignment:
| Q |
203 |
ccatttgggtctggaagaaggatgtgtcctggagt |
237 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| |
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| T |
9381276 |
ccatttgggtcaggaagaaggatgtgtcctggagt |
9381242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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