View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850_low_22 (Length: 454)
Name: NF7850_low_22
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 80 - 447
Target Start/End: Complemental strand, 23211199 - 23210832
Alignment:
| Q |
80 |
gttgcgtagatacttgtagggttaagttgaagtgtccaactcatttatatggttattcttgacccaatgtggatgtttctcgagctcccctgatgatcct |
179 |
Q |
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| T |
23211199 |
gttgcgtagatacttgtagggttaagttgaagtgtccaactcatttatatggttattcttgacccaatgtggatgtttctcgagctcccctgatgatcct |
23211100 |
T |
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| Q |
180 |
acagtgatatcatagtcattggttcgccgaatgactcattatgccggaagtcttcctaacaataatggtagggcaatgtgtcatgtttagtgcggccaat |
279 |
Q |
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| T |
23211099 |
acagtgatatcatagtcattggttcgccgaatgactcattatgccggaagtcttcctaacaataatggtagggcaatgtgtcatgtttagtgcggccaat |
23211000 |
T |
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| Q |
280 |
tgaggaggagcatgtacacatatgaatggatggatgagagattattatgtaacaagtgtgcgcagaagtctcatattagatgaaaaaatggatgttgaac |
379 |
Q |
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| T |
23210999 |
tgaggaggagcatgtacacatatgaatggatggatgagaggttattatgtaacaagtgtacgcagaagtctcatattagatgaaaaaatggatgttgaac |
23210900 |
T |
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| Q |
380 |
actatataagttataagactcataactcaatgtcttaagatttaggttaagatgtgatgtccatctca |
447 |
Q |
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| T |
23210899 |
actatataagttataagacccgtaactcaatgtcttaagatttaggttaagatgtgatgtccaactca |
23210832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 38259380 - 38259343
Alignment:
| Q |
343 |
agaagtctcatattagatgaaaaaatggatgttgaaca |
380 |
Q |
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| T |
38259380 |
agaagtctcatattagatgaaaaaatagatgttgaaca |
38259343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 41039019 - 41038977
Alignment:
| Q |
112 |
tgtccaactcatttatatggttattcttgacccaatgtggatg |
154 |
Q |
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| T |
41039019 |
tgtctaactcatttacatggttattcttgacccaatgcggatg |
41038977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 47157597 - 47157690
Alignment:
| Q |
99 |
ggttaagttgaagtgtccaactcatttatatggttattcttgacccaatgtggatgtttc-tcgagctcccctgatgatcctacagtgatatca |
191 |
Q |
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| T |
47157597 |
ggttaagatgcagtatccaactcatttgtgtgattgttcttgacccaatttggatgattcatctggctcccctcatgatccaacagtggtatca |
47157690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 388
Target Start/End: Complemental strand, 31503547 - 31503515
Alignment:
| Q |
356 |
tagatgaaaaaatggatgttgaacactatataa |
388 |
Q |
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| T |
31503547 |
tagatgagaaaatggatgttgaacactatataa |
31503515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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