View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850_low_24 (Length: 447)
Name: NF7850_low_24
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 23 - 434
Target Start/End: Original strand, 36051212 - 36051623
Alignment:
| Q |
23 |
aacacaatcaagatcttccaccatgctcaaagcttgttgagaagccctccatcactcacgattatgttgattccatagctttcattacgggtgaacagga |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36051212 |
aacacaatcaagatcttccaccatgctcaaagcttgttgagaagccctccatcactcacgattatgttgattccatagctttcattacgggtgaacagga |
36051311 |
T |
|
| Q |
123 |
tctggattccccactaaaattggaagttcaggttgttcaactgaaaattgcagattcctttgatggcgtacaacagaggagcgtcatcgtcatgacggga |
222 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36051312 |
tctggattccccactaaaatcggaagttcaggttgttcaactggaaattgcagattccattgatggcgtacaacagaggagcgtcatcgtcatgacggga |
36051411 |
T |
|
| Q |
223 |
gacaagaaatttagcaatcctgctctcggtccacaatctccaaaaccgctagacactgccttggctccaccgttgccgccgccgaaaccgcgggatggaa |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36051412 |
gacaagaaatttagcaatcctgctctcggtccacaatctccaaaaccgctagacactgccttggctccaccgttgccgccgccgaaaccgccggatggaa |
36051511 |
T |
|
| Q |
323 |
gtgttgctgcaggtatcgatccattatatgctcatgttactttacacaaatactcaccacccacgaaattgtcatcaggtaccgcagaaaacttaacaaa |
422 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36051512 |
gtgttgctgcaggtatcgatccattatatgctcctgttactttacacaaatactcaccacccatgaaattgtcatcaggtaccgcagaaaacttaacaaa |
36051611 |
T |
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| Q |
423 |
cctgatgtccat |
434 |
Q |
| |
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|||||| ||||| |
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| T |
36051612 |
cctgatctccat |
36051623 |
T |
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Back To:
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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 415
Target Start/End: Original strand, 30453622 - 30453739
Alignment:
| Q |
298 |
ccgccgccgaaaccgcgggatggaagtgttgctgcaggtatcgatccattatatgctcatgttactttacacaaatactcaccacccacgaaattgtcat |
397 |
Q |
| |
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|||||||||||||| | ||| ||||||||||| |||||||| |||| |||| ||||||||||||||||||| ||| | ||||||| ||||| || |
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| T |
30453622 |
ccgccgccgaaaccaccagatcgaagtgttgctacaggtatcaatcctttatgcgctcatgttactttacacagttacccgacacccactgtattgttat |
30453721 |
T |
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| Q |
398 |
caggtaccgcagaaaact |
415 |
Q |
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|||||||||||||||| |
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| T |
30453722 |
ttggtaccgcagaaaact |
30453739 |
T |
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