View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850_low_25 (Length: 445)

Name: NF7850_low_25
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850_low_25
NF7850_low_25
[»] chr8 (2 HSPs)
chr8 (1-240)||(42944135-42944376)
chr8 (310-427)||(42943948-42944065)
[»] chr4 (2 HSPs)
chr4 (88-161)||(33813471-33813544)
chr4 (88-156)||(49806925-49806993)
[»] chr3 (3 HSPs)
chr3 (88-168)||(25986604-25986684)
chr3 (89-175)||(54158617-54158702)
chr3 (93-175)||(48192825-48192906)
[»] chr5 (2 HSPs)
chr5 (89-168)||(11735815-11735895)
chr5 (92-159)||(11736271-11736338)
[»] chr1 (1 HSPs)
chr1 (89-141)||(36155546-36155598)
[»] chr2 (1 HSPs)
chr2 (91-137)||(19182776-19182822)


Alignment Details
Target: chr8 (Bit Score: 183; Significance: 8e-99; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 42944376 - 42944135
Alignment:
Q  1 tgttgtcaacattcaattgtatcgagctgcaaaattttattcacgattcttcgannnnnnnnn--cttctgcctctatcaccnnnnnnnttgatatgtct 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||       |||||||||||    
T  42944376 tgttgtcaacattcaattgtatcgagctgcaaaattttattcacgattcttcgattttttttcttcttctgcctctatcaccaaaaaaattgatatgtct 42944277  T
Q  99 gcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaacataactattttttcaacactttttaggaacttgcaggttctt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42944276 gcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaacataactattttttcaacactttttaggaacttgcaggttctt 42944177  T
Q  199 tctgaagcttctgtctattttacaaatgaaatggcgagaata 240  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  42944176 tctgaagcttctgtctattttacaaatgaaatggcgagaata 42944135  T

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Target: chr8; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 310 - 427
Target Start/End: Complemental strand, 42944065 - 42943948
Alignment:
Q  310 atatgttccaagtttaaaatggcgaccataccactgaattcttttgtgtaccaattttttgtgctcgccattccaatattcaaagattcttacaggaaat 409  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42944065 atatgttccaagtttaaaatggcgaccatgccattgaattcttttgtgtaccaattttttgtgctcgccattccaatattcaaagattcttacaggaaat 42943966  T
Q  410 ttgcaagttgaatctgat 427  Q
    |||||||||||| |||||    
T  42943965 ttgcaagttgaacctgat 42943948  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 33813544 - 33813471
Alignment:
Q  88 ttgatatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaacataac 161  Q
    ||||||||||||||||||||| |||| |||||||| |||||||||||||||||| || | ||||||||||||||    
T  33813544 ttgatatgtctgcccctagtttaaaattattgatagaaatgcccctgttcttcattttagttggcgaacataac 33813471  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 49806993 - 49806925
Alignment:
Q  88 ttgatatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaac 156  Q
    ||||||| |||||||||| || ||||  ||||||||||| |||| ||||||||| || |||||| ||||    
T  49806993 ttgatatatctgcccctaattcaaaatcattgatacaaaagcccttgttcttcatttgatttggtgaac 49806925  T

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Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 25986604 - 25986684
Alignment:
Q  88 ttgatatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaacataactattttt 168  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||  || | ||||||||||| || ||||||    
T  25986604 ttgatatgtctgcccctagttgaaaattattgatacaattgcccctgttcttctttttagttggcgaacatgaccattttt 25986684  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 175
Target Start/End: Complemental strand, 54158702 - 54158617
Alignment:
Q  89 tgatatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaacataactattttttcaacac 175  Q
    ||||||||||||||||| || |||| ||||| || |||||||| ||||||||||||   |||||||| ||| | |||||||||||||    
T  54158702 tgatatgtctgcccctatttcaaaattattgttaaaaatgcccttgttcttcaattaggttggcgaatatagc-attttttcaacac 54158617  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 48192825 - 48192906
Alignment:
Q  93 atgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaacataactattttttcaacac 175  Q
    ||||||||| |||||| |||| |||||||| ||||| ||||||| |||||||   |||||||||||  | |||||||||||||    
T  48192825 atgtctgccactagttcaaaattattgataaaaatgtccctgttgttcaattaggttggcgaacatggc-attttttcaacac 48192906  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 168
Target Start/End: Original strand, 11735815 - 11735895
Alignment:
Q  89 tgatatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaacata-actattttt 168  Q
    |||||||||| ||||||||| |||| ||||||| ||| | ||| ||||||||| || |||||||||||||| |||||||||    
T  11735815 tgatatgtctacccctagttcaaaattattgatgcaatttcccttgttcttcattttatttggcgaacatacactattttt 11735895  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 11736338 - 11736271
Alignment:
Q  92 tatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaacata 159  Q
    ||||||||||||||||| |||| ||||||||||| ||||| | ||||||| ||||| || ||||||||    
T  11736338 tatgtctgcccctagttcaaaattattgatacaattgccctttttcttcatttcatctgacgaacata 11736271  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 36155546 - 36155598
Alignment:
Q  89 tgatatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttca 141  Q
    |||||||||||||||||||||| ||||| || |||| |||||| |||||||||    
T  36155546 tgatatgtctgcccctagttgagaactaatgttacatatgcccttgttcttca 36155598  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 19182776 - 19182822
Alignment:
Q  91 atatgtctgcccctagttgaaaactattgatacaaatgcccctgttc 137  Q
    |||||||||||||||||| |||| |||||||||| |||||| |||||    
T  19182776 atatgtctgcccctagttcaaaagtattgatacatatgcccttgttc 19182822  T

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