View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7850_low_29 (Length: 423)
Name: NF7850_low_29
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_low_29 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
| [»] scaffold0020 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0005 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 2 - 414
Target Start/End: Complemental strand, 176160 - 175748
Alignment:
| Q |
2 |
cagctttaggggtgccacatgaatctagtaacaaaaatgctattgatgatgtgccactagaaattattgaatcaaaagaggatgatattatccctatgga |
101 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
176160 |
cagctttaggggtgccacatgaatctagtggcaaaaatgctattgatgatgtgccactagaaattattgaatcagaagaggatgatattatccctatgga |
176061 |
T |
|
| Q |
102 |
aagtaacaaatcaagaaagaaaggaaaggtttcaccatatatgggtgagaaagttacaaagggtaagaccaaggttgggactgcaaaaactatgagaaac |
201 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
176060 |
aagtaacaaatcaagaaagaaaagaaaggtttcaccagatatgggtgagaaagttacaaagggtaagaccaaggttgggactgcaacaactatgagaaac |
175961 |
T |
|
| Q |
202 |
acatttgagcgattagttcaagcagcagaaggtcataatgaaattgagaaggccaaaattgcagcaacatctagtgttcttggacaatattcaattcctg |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
175960 |
acatttgagcgattagttcaagcagcagaaggtcataataaaattgagaaggccgaaattgcagcaacatctaatgttcttggacaatattcaattcctg |
175861 |
T |
|
| Q |
302 |
attgtgttacaatattgaaaagtgcgaaggaggaaggacatttgaataatcgacaatttagttatgctttggagatgcttaaagatgaagataatagaat |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
175860 |
attgtgttacaatattgaaaagtgcgaaggaggaaggacatttgaataatcgacaatttagttatgctttggagatgcttaaagatgaagataatagaat |
175761 |
T |
|
| Q |
402 |
cttactgatgtcc |
414 |
Q |
| |
|
||||||||||||| |
|
|
| T |
175760 |
cttactgatgtcc |
175748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 2 - 414
Target Start/End: Original strand, 14641132 - 14641544
Alignment:
| Q |
2 |
cagctttaggggtgccacatgaatctagtaacaaaaatgctattgatgatgtgccactagaaattattgaatcaaaagaggatgatattatccctatgga |
101 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14641132 |
cagctttaggggtgccacatgaatctagtggcaaaaatgctattgatgatgtgccactagaaattattgaatcagaagaggatgatattatccctatgga |
14641231 |
T |
|
| Q |
102 |
aagtaacaaatcaagaaagaaaggaaaggtttcaccatatatgggtgagaaagttacaaagggtaagaccaaggttgggactgcaaaaactatgagaaac |
201 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14641232 |
aagtaacaaatcaagaaagaaaagaaaggtttcaccagatatgggtgagaaagttacaaagggtaagaccaaggttgggactgcaacaactatgagaaac |
14641331 |
T |
|
| Q |
202 |
acatttgagcgattagttcaagcagcagaaggtcataatgaaattgagaaggccaaaattgcagcaacatctagtgttcttggacaatattcaattcctg |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14641332 |
acatttgagcgattagttcaagcagcagaaggtcataataaaattgagaaggccgaaattgcagcaacatctaatgttcttggacaatattcaattcctg |
14641431 |
T |
|
| Q |
302 |
attgtgttacaatattgaaaagtgcgaaggaggaaggacatttgaataatcgacaatttagttatgctttggagatgcttaaagatgaagataatagaat |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14641432 |
attgtgttacaatattgaaaagtgcgaaggaggaaggacatttgaataatcgacaatttagttatgctttggagatgcttaaagatgaagataatagaat |
14641531 |
T |
|
| Q |
402 |
cttactgatgtcc |
414 |
Q |
| |
|
||||||||||||| |
|
|
| T |
14641532 |
cttactgatgtcc |
14641544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 2 - 274
Target Start/End: Original strand, 26110576 - 26110848
Alignment:
| Q |
2 |
cagctttaggggtgccacatgaatctagtaacaaaaatgctattgatgatgtgccactagaaattattgaatcaaaagaggatgatattatccctatgga |
101 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26110576 |
cagctttaggggtgccacatgaatctagtggcaaaaatgttattgatgatgtgccactagaaattattgaatcagaagaggatgatattatccctatgga |
26110675 |
T |
|
| Q |
102 |
aagtaacaaatcaagaaagaaaggaaaggtttcaccatatatgggtgagaaagttacaaagggtaagaccaaggttgggactgcaaaaactatgagaaac |
201 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||| |
|
|
| T |
26110676 |
aagtaacaaatcaagaaagaaaagaaaggtttcaccagatatgggtgagaaagttacaaagggtaagatcaaggttgggactgcaacaacgatgagaaac |
26110775 |
T |
|
| Q |
202 |
acatttgagcgattagttcaagcagcagaaggtcataatgaaattgagaaggccaaaattgcagcaacatcta |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
26110776 |
acatttgagcgattagttcaagcagcagaaggtcataatgaaattgagaaggccgaaattgtagcaacatcta |
26110848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 125 - 389
Target Start/End: Complemental strand, 10012531 - 10012268
Alignment:
| Q |
125 |
gaaaggtttcaccatatatgggtgagaaagttacaaagggtaagaccaaggttgggactgcaaaaactatgagaaacacatttgagcgattagttcaagc |
224 |
Q |
| |
|
|||||||||||||| |||||| |||||||| ||| || ||||| | ||||||||||||||| |||||||||||| ||||| || |||||| | |||| |
|
|
| T |
10012531 |
gaaaggtttcaccaaatatggatgagaaagcaacatagagtaaggcaaaggttgggactgcaccaactatgagaaaaacattagaacgattaatccaagt |
10012432 |
T |
|
| Q |
225 |
agcagaaggtcataatgaaattgagaaggccaaaattgcagcaacatctagtgttcttggacaatattcaattcctgattgtgttacaatattgaaaagt |
324 |
Q |
| |
|
||||||| |||||||||| |||| ||||| |||||| |||||||||| ||| |||| ||||||| ||||| ||| || ||||||| |||||| |
|
|
| T |
10012431 |
agcagaaaatcataatgaagttgaaaaggctgaaattgaagcaacatctcatgtcaatggaaaatattctattccaacatgt-ttgcaatattaaaaagt |
10012333 |
T |
|
| Q |
325 |
gcgaaggaggaaggacatttgaataatcgacaatttagttatgctttggagatgcttaaagatga |
389 |
Q |
| |
|
|| ||||| ||||||| |||| || |||||||||||||||||| || ||| |||| ||||| |
|
|
| T |
10012332 |
gcaaaggaagaaggacttttggatgggaaacaatttagttatgctttagaaatggttaaggatga |
10012268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 125 - 389
Target Start/End: Complemental strand, 10019672 - 10019409
Alignment:
| Q |
125 |
gaaaggtttcaccatatatgggtgagaaagttacaaagggtaagaccaaggttgggactgcaaaaactatgagaaacacatttgagcgattagttcaagc |
224 |
Q |
| |
|
|||||||||||||| |||||| |||||||| ||| || ||||| | ||||||||||||||| |||||||||||| ||||| || |||||| | |||| |
|
|
| T |
10019672 |
gaaaggtttcaccaaatatggatgagaaagcaacatagagtaaggcaaaggttgggactgcaccaactatgagaaaaacattagaacgattaatccaagt |
10019573 |
T |
|
| Q |
225 |
agcagaaggtcataatgaaattgagaaggccaaaattgcagcaacatctagtgttcttggacaatattcaattcctgattgtgttacaatattgaaaagt |
324 |
Q |
| |
|
||||||| |||||||||| |||| ||||| |||||| |||||||||| ||| |||| ||||||| ||||| ||| || ||||||| |||||| |
|
|
| T |
10019572 |
agcagaaaatcataatgaagttgaaaaggctgaaattgaagcaacatctcatgtcaatggaaaatattctattccaacatgt-ttgcaatattaaaaagt |
10019474 |
T |
|
| Q |
325 |
gcgaaggaggaaggacatttgaataatcgacaatttagttatgctttggagatgcttaaagatga |
389 |
Q |
| |
|
|| ||||| ||||||| |||| || |||||||||||||||||| || ||| |||| ||||| |
|
|
| T |
10019473 |
gcaaaggaagaaggacttttggatgggaaacaatttagttatgctttagaaatggttaaggatga |
10019409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 390
Target Start/End: Original strand, 10154177 - 10154253
Alignment:
| Q |
314 |
tattgaaaagtgcgaaggaggaaggacatttgaataatcgacaatttagttatgctttggagatgcttaaagatgaa |
390 |
Q |
| |
|
||||||||||||| ||||| || ||| ||||||| | |||||||||||||||||| || ||||||||||||||| |
|
|
| T |
10154177 |
tattgaaaagtgcaaaggatgatggatttttgaatggttaacaatttagttatgctttagaaatgcttaaagatgaa |
10154253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 2 - 414
Target Start/End: Original strand, 29564425 - 29564837
Alignment:
| Q |
2 |
cagctttaggggtgccacatgaatctagtaacaaaaatgctattgatgatgtgccactagaaattattgaatcaaaagaggatgatattatccctatgga |
101 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29564425 |
cagctttaggggtgccacatgaatctagtggcaaaaatgatattgatgatgtgccactagaaattattgaatcagaagaggatgatattatccctatgga |
29564524 |
T |
|
| Q |
102 |
aagtaacaaatcaagaaagaaaggaaaggtttcaccatatatgggtgagaaagttacaaagggtaagaccaaggttgggactgcaaaaactatgagaaac |
201 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||| |
|
|
| T |
29564525 |
aagtaacaaatcaagaaagaaaagaaaggtttcaccagatatgggtgagaaagttacaaagggtaagaacaaggttgggactgcaacaacaatgagaaac |
29564624 |
T |
|
| Q |
202 |
acatttgagcgattagttcaagcagcagaaggtcataatgaaattgagaaggccaaaattgcagcaacatctagtgttcttggacaatattcaattcctg |
301 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29564625 |
acatttgagcgattagttcaagcaacagaaagtcataataaaattgagaaggccgaaattgcagcaacatctaatgttcttggacaatattcaattcctg |
29564724 |
T |
|
| Q |
302 |
attgtgttacaatattgaaaagtgcgaaggaggaaggacatttgaataatcgacaatttagttatgctttggagatgcttaaagatgaagataatagaat |
401 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29564725 |
attgtgttacaatattgaaaagtacgaaggaggaaggacatttgaataatcgacaatttagttatgctttggagatgcttaaagatgaagataatagaat |
29564824 |
T |
|
| Q |
402 |
cttactgatgtcc |
414 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
29564825 |
cgtactgatgtcc |
29564837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 117 - 390
Target Start/End: Original strand, 24956620 - 24956893
Alignment:
| Q |
117 |
aaagaaaggaaaggtttcaccatatatgggtgagaaagttacaaagggtaagaccaaggttgggactgcaaaaactatgagaaacacatttgagcgatta |
216 |
Q |
| |
|
||||||| ||||||||||||||||||| || | |||||| |||||||| ||| | |||||||||||| ||| || ||||||||| ||||||||||| ||| |
|
|
| T |
24956620 |
aaagaaaagaaaggtttcaccatatattggagtgaaagtgacaaagggaaaggcaaaggttgggacttcaacaattatgagaaaaacatttgagcggtta |
24956719 |
T |
|
| Q |
217 |
gttcaagcagcagaaggtcataatgaaattgagaaggccaaaattgcagcaacatctagtgttcttggacaatattcaattcctgattgtgttacaatat |
316 |
Q |
| |
|
||| ||||||| ||||||||||||||| |||| ||||| ||||||| || || ||| ||| | |||| | || || ||||| ||||| |||| | ||| |
|
|
| T |
24956720 |
gttgaagcagctgaaggtcataatgaagttgaaaaggctcaaattgcggccacctctcatgtccatggagagtactctattccagattgcgttaaattat |
24956819 |
T |
|
| Q |
317 |
tgaaaagtgcgaaggaggaaggacatttgaataatcgacaatttagttatgctttggagatgcttaaagatgaa |
390 |
Q |
| |
|
|||||||||| ||||| | || ||||||| || |||||||||||||||||| || ||||||||||||||| |
|
|
| T |
24956820 |
tgaaaagtgcaaaggattatggttttttgaatggtcaacaatttagttatgctttagaaatgcttaaagatgaa |
24956893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 117 - 390
Target Start/End: Complemental strand, 18176491 - 18176218
Alignment:
| Q |
117 |
aaagaaaggaaaggtttcaccatatatgggtgagaaagttacaaagggtaagaccaaggttgggactgcaaaaactatgagaaacacatttgagcgatta |
216 |
Q |
| |
|
||||||| |||| ||||||||| ||| || |||||||| |||||||| ||| | ||||||||||| ||| ||||||||||| ||||||||||| ||| |
|
|
| T |
18176491 |
aaagaaaagaaaagtttcaccagctattggagagaaagtgacaaagggaaaggcaaaggttgggacaacaacaactatgagaagaacatttgagcggtta |
18176392 |
T |
|
| Q |
217 |
gttcaagcagcagaaggtcataatgaaattgagaaggccaaaattgcagcaacatctagtgttcttggacaatattcaattcctgattgtgttacaatat |
316 |
Q |
| |
|
||| ||||||| ||||||||||||||| |||| ||||| |||||||||| || ||| ||| | |||| | || || |||| ||||| |||| | ||| |
|
|
| T |
18176391 |
gttgaagcagccgaaggtcataatgaagttgaaaaggctcaaattgcagccacctctcatgtccatggagagtactctattctagattgcgttaaattat |
18176292 |
T |
|
| Q |
317 |
tgaaaagtgcgaaggaggaaggacatttgaataatcgacaatttagttatgctttggagatgcttaaagatgaa |
390 |
Q |
| |
|
|||||||||| ||||| || || ||||||| || |||||||||| ||||||| || ||||||||||||||| |
|
|
| T |
18176291 |
tgaaaagtgcaaaggatgatggttttttgaatggtcaacaatttagtcatgctttagaaatgcttaaagatgaa |
18176218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 147 - 345
Target Start/End: Original strand, 44506557 - 44506755
Alignment:
| Q |
147 |
tgagaaagttacaaagggtaagaccaaggttgggactgcaaaaactatgagaaacacatttgagcgattagttcaagcagcagaaggtcataatgaaatt |
246 |
Q |
| |
|
|||||||| |||||| ||||| | ||||||||||||||| | |||||||||| ||||| || |||||||| |||| ||||||| |||||||||| || |
|
|
| T |
44506557 |
tgagaaagcaacaaagagtaaggcaaaggttgggactgcaccagctatgagaaaaacattagaacgattagtccaagtagcagaaaatcataatgaagtt |
44506656 |
T |
|
| Q |
247 |
gagaaggccaaaattgcagcaacatctagtgttcttggacaatattcaattcctgattgtgttacaatattgaaaagtgcgaaggaggaaggacatttg |
345 |
Q |
| |
|
|| ||||| |||||| |||||||||| ||| |||| ||||||| ||||| |||||| ||||||| |||||||| ||||| ||||||| |||| |
|
|
| T |
44506657 |
gaaaaggctgaaattgaagcaacatctcatgtcaatggaaaatattctattccaacatgtgttgcaatattaaaaagtgcaaaggaagaaggacttttg |
44506755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 48 - 414
Target Start/End: Original strand, 7230679 - 7231045
Alignment:
| Q |
48 |
tgatgtgccactagaaattattgaatcaaaagaggatgatattatccctatggaaagtaacaaatcaagaaagaaaggaaaggtttcaccatatatgggt |
147 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
7230679 |
tgatgtgtcactagaacttattgaatcagaagaggatgatattatccctatggaaagtaacaaatcaagaaagaaaagaaaggtttcaccagatatgggt |
7230778 |
T |
|
| Q |
148 |
gagaaagttacaaagggtaagaccaaggttgggactgcaaaaactatgagaaacacatttgagcgattagttcaagcagcagaaggtcataatgaaattg |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
7230779 |
gagaaagttacaaagggtaagaccaaggttgggactgcaacaactatgagaaacacatttgagcgattagttcaagcatcagaatgtcataatgaaattg |
7230878 |
T |
|
| Q |
248 |
agaaggccaaaattgcagcaacatctagtgttcttggacaatattcaattcctgattgtgttacaatattgaaaagtgcgaaggaggaaggacatttgaa |
347 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7230879 |
agaaggccgaaattgcagcaacatctaatgttcttggacaatattcaattcctgattgtgttacaatattgaaaagtgcgaaggaggaaggacatttgaa |
7230978 |
T |
|
| Q |
348 |
taatcgacaatttagttatgctttggagatgcttaaagatgaagataatagaatcttactgatgtcc |
414 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7230979 |
taatcgacaatttagttatactttggtgatgcttaaagatgaagataatagaatcttactgatgtcc |
7231045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 2 - 378
Target Start/End: Original strand, 7230307 - 7230683
Alignment:
| Q |
2 |
cagctttaggggtgccacatgaatctagtaacaaaaatgctattgatgatgtgccactagaaattattgaatcaaaagaggatgatattatccctatgga |
101 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7230307 |
cagctttagggatgccacatgaatctagtggaaaaaatgctattgatgatgtgtcactagaacttattgaatcagaagaggatgatattatccctatgga |
7230406 |
T |
|
| Q |
102 |
aagtaacaaatcaagaaagaaaggaaaggtttcaccatatatgggtgagaaagttacaaagggtaagaccaaggttgggactgcaaaaactatgagaaac |
201 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7230407 |
aagtaacaaatcaagaaagaaaaaaaaggtttcaccagatatgggtgagaaagttacaaagggtaagaccaaggttgggactgcaacaactatgagaaac |
7230506 |
T |
|
| Q |
202 |
acatttgagcgattagttcaagcagcagaaggtcataatgaaattgagaaggccaaaattgcagcaacatctagtgttcttggacaatattcaattcctg |
301 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7230507 |
acatttgagcgattagttcaagcatcagaatgtcataatgaaattgagaaggccgaaattgcagcaacatctaatgttcttggacaatattcaattcctg |
7230606 |
T |
|
| Q |
302 |
attgtgttacaatattgaaaagtgcgaaggaggaaggacatttgaataatcgacaatttagttatgctttggagatg |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7230607 |
attgtgttacaatattgaaaagtgcgaaggaggaaggacatttgaataatcgacaatttagttatgctttggtgatg |
7230683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 117 - 411
Target Start/End: Complemental strand, 21023055 - 21022761
Alignment:
| Q |
117 |
aaagaaaggaaaggtttcaccatatatgggtgagaaagttacaaagggtaagaccaaggttgggactgcaaaaactatgagaaacacatttgagcgatta |
216 |
Q |
| |
|
||||||| |||||||||||||| |||| || |||||||| |||||||| ||| | ||||||||||| ||| |||||||||||| ||||||||||| ||| |
|
|
| T |
21023055 |
aaagaaaagaaaggtttcaccaaatattggagagaaagtgacaaagggaaaggcaaaggttgggacaacaacaactatgagaaaaacatttgagcggtta |
21022956 |
T |
|
| Q |
217 |
gttcaagcagcagaaggtcataatgaaattgagaaggccaaaattgcagcaacatctagtgttcttggacaatattcaattcctgattgtgttacaatat |
316 |
Q |
| |
|
||| |||||| ||||||||||||||| |||| ||||| ||||||| || || ||| ||| | |||| | || || ||||| | ||| |||| | ||| |
|
|
| T |
21022955 |
gtttaagcagttgaaggtcataatgaagttgaaaaggctcaaattgcggccacctctcatgtccatggagagtactctattccagtttgcgttaaattat |
21022856 |
T |
|
| Q |
317 |
tgaaaagtgcgaaggaggaaggacatttgaataatcgacaatttagttatgctttggagatgcttaaagatgaagataatagaatcttactgatg |
411 |
Q |
| |
|
|||||||||| ||||| || || ||||||| || |||||||||||||||||| || ||||||||||||||| | ||| || || |||||||| |
|
|
| T |
21022855 |
tgaaaagtgcaaaggatgatggttttttgaatggtcaacaatttagttatgctttagaaatgcttaaagatgaacaaaatcgagtcctactgatg |
21022761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 34 - 413
Target Start/End: Original strand, 131097 - 131476
Alignment:
| Q |
34 |
aaaaatgctattgatgatgtgccactagaaattattgaatcaaaagaggatgatattatccctatggaaagtaacaaatcaagaaagaaaggaaaggttt |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
131097 |
aaaaatgctattgatgatgtgccactagaaattattgaatcagaagaggatgatattatacctatggaaagtaacaaatcaagaaagaaaagaaaggttt |
131196 |
T |
|
| Q |
134 |
caccatatatgggtgagaaagttacaaagggtaagaccaaggttgggactgcaaaaactatgagaaacacatttgagcgattagttcaagcagcagaagg |
233 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
131197 |
caccagatatgggtgagaaagttacaaagtgtaagaccaaggttgggactgcaacaactatgagaaacacatttgagcgattagttcaagcagcaaaagg |
131296 |
T |
|
| Q |
234 |
tcataatgaaattgagaaggccaaaattgcagcaacatctagtgttcttggacaatattcaattcctgattgtgttacaatattgaaaagtgcgaaggag |
333 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
131297 |
tcataatgaaattaagaagaatgaaattgcagcaacatctaatgttcgtggacaatattcaattcttgattgtgttacaatattgaaaagtacgaaggag |
131396 |
T |
|
| Q |
334 |
gaaggacatttgaataatcgacaatttagttatgctttggagatgcttaaagatgaagataatagaatcttactgatgtc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
131397 |
gaaggacatttgaataatcgacaatttagttatgctttggagatgcttaaagatgaagataatagaatcttactgatgtc |
131476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 2 - 414
Target Start/End: Complemental strand, 4576870 - 4576455
Alignment:
| Q |
2 |
cagctttaggggtgccacatgaatctagtaacaaaaatgctattgatgatgtgccactagaaattattgaatcaaaagaggatgatattatccctatgga |
101 |
Q |
| |
|
||||||| ||||||| || |||||||||| |||||||| ||||||||| |||||| |||||||||||||||| ||||||||||| |||||| ||||| |
|
|
| T |
4576870 |
cagctttgggggtgcgacgtgaatctagtggcaaaaatgatattgatgacgtgccattagaaattattgaatctgaagaggatgatgttatccttatggg |
4576771 |
T |
|
| Q |
102 |
aagtaacaaatcaagaaagaaaggaaaggtttcaccatatatgggtgagaaagttacaaagggtaagaccaaggttgggactgcaaaaactatgagaaac |
201 |
Q |
| |
|
|| |||| |||||||||||||| |||| ||||||||| ||||||||| ||||||||||||||||||||| |||| ||||||| ||| ||||||||||| | |
|
|
| T |
4576770 |
aaataaccaatcaagaaagaaaagaaatgtttcaccagatatgggtgtgaaagttacaaagggtaagacaaaggctgggactacaacaactatgagaatc |
4576671 |
T |
|
| Q |
202 |
acatttgagcgattagttcaagcagcagaaggtcataatgaaattgagaaggccaaaattgcagcaacatctagtgttcttggacaatattcaattcctg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4576670 |
acatttgagcgattagttcaagcagcagaaggtcataatgaaattgagaaggccgaaattgcagcaacatctaatgttcttggacaatattcaattcctg |
4576571 |
T |
|
| Q |
302 |
attgtg---ttacaatattgaaaagtgcgaaggaggaaggacatttgaataatcgacaatttagttatgctttggagatgcttaaagatgaagataatag |
398 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4576570 |
attgtgttattacaatattgaaatgtgcgaaggaggaaggacatttgaatagtcgacaatttagttatgctttggagaagcttaaagatgaagataatag |
4576471 |
T |
|
| Q |
399 |
aatcttactgatgtcc |
414 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
4576470 |
aattttactgatgtcc |
4576455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 110 - 389
Target Start/End: Complemental strand, 9787679 - 9787400
Alignment:
| Q |
110 |
aatcaagaaagaaaggaaaggtttcaccatatatgggtgagaaagttacaaagggtaagaccaaggttgggactgcaaaaactatgagaaacacatttga |
209 |
Q |
| |
|
|||||| ||| ||| |||||||||||||| |||||| |||||||| |||||| ||||||| ||||||||||||||| | |||||||||| ||||| || |
|
|
| T |
9787679 |
aatcaaaaaataaaagaaaggtttcaccaaatatggatgagaaagcaacaaagagtaagacaaaggttgggactgcaccagctatgagaaaaacattaga |
9787580 |
T |
|
| Q |
210 |
gcgattagttcaagcagcagaaggtcataatgaaattgagaaggccaaaattgcagcaacatctagtgttcttggacaatattcaattcctgattgtgtt |
309 |
Q |
| |
|
|||||||| |||| ||||||| |||||||||| |||| ||||| |||||| |||||||||| ||| |||| ||||||| ||||| |||||| |
|
|
| T |
9787579 |
acgattagtccaagtagcagaaaatcataatgaacttgaaaaggctgaaattgaagcaacatctcatgtcaatggaaaatattctattccaacatgtgtt |
9787480 |
T |
|
| Q |
310 |
acaatattgaaaagtgcgaaggaggaaggacatttgaataatcgacaatttagttatgctttggagatgcttaaagatga |
389 |
Q |
| |
|
||||||| |||||||| ||||| ||||||| |||| || |||||||||||||||||| || ||| |||| ||||| |
|
|
| T |
9787479 |
tcaatattaaaaagtgcaaaggaagaaggacttttggatgggaaacaatttagttatgctttagaaatggttaaggatga |
9787400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 125 - 345
Target Start/End: Original strand, 3590131 - 3590351
Alignment:
| Q |
125 |
gaaaggtttcaccatatatgggtgagaaagttacaaagggtaagaccaaggttgggactgcaaaaactatgagaaacacatttgagcgattagttcaagc |
224 |
Q |
| |
|
|||||||||||||| |||||| |||||||| ||||| | ||| | ||||||||||||||| | |||||||||| ||||| || |||||||| |||| |
|
|
| T |
3590131 |
gaaaggtttcaccaaatatggatgagaaagcaacaaataggaaggcaaaggttgggactgcaccagctatgagaaaaacattagaacgattagtccaagt |
3590230 |
T |
|
| Q |
225 |
agcagaaggtcataatgaaattgagaaggccaaaattgcagcaacatctagtgttcttggacaatattcaattcctgattgtgttacaatattgaaaagt |
324 |
Q |
| |
|
||||||| |||||||||| |||| ||||| |||||| |||||||||| ||| |||| ||||||| ||| | |||||| ||||||| |||||| |
|
|
| T |
3590231 |
agcagaaaatcataatgaagttgaaaaggctgaaattgaagcaacatctcatgtcaatggaaaatattctatttcaacatgtgttgcaatattaaaaagt |
3590330 |
T |
|
| Q |
325 |
gcgaaggaggaaggacatttg |
345 |
Q |
| |
|
|| ||||| ||||||| |||| |
|
|
| T |
3590331 |
gcaaaggaagaaggacttttg |
3590351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 148 - 263
Target Start/End: Complemental strand, 19607299 - 19607184
Alignment:
| Q |
148 |
gagaaagttacaaagggtaagaccaaggttgggactgcaaaaactatgagaaacacatttgagcgattagttcaagcagcagaaggtcataatgaaattg |
247 |
Q |
| |
|
|||||||| |||||||| ||| | ||||||||||| ||| |||||||||||||||||||||||| ||| | ||||| | ||||||||||||||| ||| |
|
|
| T |
19607299 |
gagaaagtgacaaagggaaaggcaaaggttgggacgacaacaactatgagaaacacatttgagcggttaactgaagcatctgaaggtcataatgaagttg |
19607200 |
T |
|
| Q |
248 |
agaaggccaaaattgc |
263 |
Q |
| |
|
| ||||| ||||||| |
|
|
| T |
19607199 |
aaaaggctcaaattgc |
19607184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 117 - 411
Target Start/End: Original strand, 32604723 - 32605017
Alignment:
| Q |
117 |
aaagaaaggaaaggtttcaccatatatgggtgagaaagttacaaagggtaagaccaaggttgggactgcaaaaactatgagaaacacatttgagcgatta |
216 |
Q |
| |
|
||||||| |||||||||||||| |||| || |||||||| |||||||| ||| | ||||||||||| ||| |||||||||||| ||||||||||| ||| |
|
|
| T |
32604723 |
aaagaaaagaaaggtttcaccaaatattggagagaaagtgacaaagggaaaggcaaaggttgggacaacaacaactatgagaaaaacatttgagcggtta |
32604822 |
T |
|
| Q |
217 |
gttcaagcagcagaaggtcataatgaaattgagaaggccaaaattgcagcaacatctagtgttcttggacaatattcaattcctgattgtgttacaatat |
316 |
Q |
| |
|
||| |||||| ||||||||||||||| |||| ||||| ||||||| || || ||| ||| | |||| | || || ||||| || || |||| | ||| |
|
|
| T |
32604823 |
gttaaagcagatgaaggtcataatgaagttgaaaaggctcaaattgcggccacctctcatgtccatggagagtactctattccagaatgcgttaaattat |
32604922 |
T |
|
| Q |
317 |
tgaaaagtgcgaaggaggaaggacatttgaataatcgacaatttagttatgctttggagatgcttaaagatgaagataatagaatcttactgatg |
411 |
Q |
| |
|
|||||||||| ||||| | || ||||||| || |||||||||||||||||| || ||||||||||||||| | ||| || || |||||||| |
|
|
| T |
32604923 |
tgaaaagtgcaaaggataatggttttttgaatggtcaacaatttagttatgctttagaaatgcttaaagatgaacaaaatcgagtcctactgatg |
32605017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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