View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850_low_3 (Length: 964)
Name: NF7850_low_3
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 545 - 948
Target Start/End: Complemental strand, 39753347 - 39752927
Alignment:
| Q |
545 |
tattccttcaattttgttattttcataaggtgttaatcatagtaaaagtttgaccttttaatctgtcttaccaaaatcaaatattcttgtaagaatcata |
644 |
Q |
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| T |
39753347 |
tattccttcaattttattattttcataaggtgttaatcatagtaaaagtttgaccttttaatctgtcttaccaaaatcaaatattcttgtaagaatcata |
39753248 |
T |
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| Q |
645 |
tataaatatgtagtagccctaagaagacaactgaattttcatattgcataagtatgtgctgcgtttagcattcaaaagnnnnnnnnngttctttctactt |
744 |
Q |
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| T |
39753247 |
tataaatatgtagcagccctaagaagacaactgaattttcatattgcataagtatgtgctgcgtttagcattcaaaagaaaaaaaaa-atctttctactt |
39753149 |
T |
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| Q |
745 |
cgttactagctaggtgtcaattcatagtaaaagttcgatcttattataatctcaaagacgaaattc-aannnnnnngaaaacatttgtaaaatgactatc |
843 |
Q |
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| T |
39753148 |
cgttactagcta-gtgtcaattcatagtaaaagttcgatcttattataatctcaaagacgaaattcgattttttttgaaaacatttgtaaaatgactatc |
39753050 |
T |
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| Q |
844 |
agtatcattataataaatgataattattctttccctaattttttaaaa------------------taaaaatagtaccagtagcaacatagcaggaggt |
925 |
Q |
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| T |
39753049 |
agtatcattataataaatgataattattctttccctaatttttaaaaaaaaaaatagttgacggttaaaaaatagtaccagttgcaacatagcaggaggt |
39752950 |
T |
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| Q |
926 |
gagagatcctatgatgtttgtga |
948 |
Q |
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| T |
39752949 |
gagagatcctatgatgtttgtga |
39752927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 11 - 358
Target Start/End: Complemental strand, 39753753 - 39753395
Alignment:
| Q |
11 |
atggacatcacaatgtttgatattaaactttcacatccagcagcataattaacagcggttcgagagaatgaacctgccacaatacatatgacat------ |
104 |
Q |
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| T |
39753753 |
atggccatcacaatgtttgatattaaactttcacatccagcagcataattaacagcggttcgagagaatgaacctgccacaatacatatgacatgttaat |
39753654 |
T |
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| Q |
105 |
-----------tttgttagttagtaaatatagtaatcaaataagaaccttcttaatttatttatgttgccaataagaagaggtctaaagaggacaccgta |
193 |
Q |
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| T |
39753653 |
gcataaagtattttgttagttagtaaatatagtaatcaaataagaaccttcttaatttatttatgttgcca-------gaggtctaaagaggacaccgta |
39753561 |
T |
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| Q |
194 |
atggattcagttcaattatttaatgctaatggagttttannnnnnn-attctacttaggtttaaatttaataggtatattttcttgtgctttctttgatg |
292 |
Q |
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| T |
39753560 |
atggattcagttcaattatttaatgctaatggagttttattttttttattctacttaggtttaaatttaataggtatattttcttgtgctttctttgatg |
39753461 |
T |
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| Q |
293 |
gaacttgtcttgcgctttctaaaagcaatttcagataattggggaccaaagagactatagatgctg |
358 |
Q |
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| T |
39753460 |
gaacttgtcttgtgctttctaaaagcaatttcagataattggggaccaaaaagactatagatgctg |
39753395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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