View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850_low_31 (Length: 422)
Name: NF7850_low_31
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 41037744 - 41038157
Alignment:
| Q |
1 |
actgatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaaagaatgcttaca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
41037744 |
actgatggattgatcttctttattgcaccacaagacactgtgattccacccaattcagaaagtcaatattttggagtagttgattcaaagaatgcttaca |
41037843 |
T |
|
| Q |
101 |
atcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttcgaccaagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41037844 |
atcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttcgaccaagat |
41037943 |
T |
|
| Q |
201 |
cgtggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacacattgagtgttgttgtcatacatgcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41037944 |
cgtggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacacattgagtgttgttgtcatacatgcc |
41038043 |
T |
|
| Q |
301 |
aatggcaaaattgttaccattgctgacatagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctgctgcttcaataactggtatac |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41038044 |
aatggcaaaattgttaccattgctgacatagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctgctgcttcagtaactggtatag |
41038143 |
T |
|
| Q |
401 |
cacatgatgtccat |
414 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
41038144 |
cacatgatatccat |
41038157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 41065934 - 41066323
Alignment:
| Q |
1 |
actgatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaaagaatgcttaca |
100 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||||| ||||| ||||||||||||| ||| |||||| |
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|
| T |
41065934 |
actgatggtttggtcttctttattgcaccacaagacactaagattccacccaactcagaaagtcaatatcttggagtagttgattcaaaaaatacttaca |
41066033 |
T |
|
| Q |
101 |
atcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttcgaccaagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||| ||||| |
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|
| T |
41066034 |
atcaatttgttggtgtagagtttgacctttatcccaatagttttgatcccaatacgaaacatattggaatcgatgtcaactctttaatttctctcaagac |
41066133 |
T |
|
| Q |
201 |
cgtggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacacattgagtgttgttgtcatacatgcc |
300 |
Q |
| |
|
|||| || ||||||| | ||||| |||||||| | ||||||||| ||| ||||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
41066134 |
cgtgaaa------tgggaattcgcgagtggatcattgactaaagtaagtaaagcatatgactcttcctctaacacattgagtgttgttgtcacttatgcc |
41066227 |
T |
|
| Q |
301 |
aatggcaaaattgttaccattgctgacatagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctgctgcttcaataactggt |
396 |
Q |
| |
|
||||| ||| || |||||||||| | || |||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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|
| T |
41066228 |
aatggaaaattttctaccattgctcaaatcgttgatttgaaagctgtgctccccaacaaggttaggtttggtctatctggtgcttcaataactggt |
41066323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 41043786 - 41044173
Alignment:
| Q |
1 |
actgatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaaagaatgcttaca |
100 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||| ||||||||||||| ||||| || | | ||||||| |||||||| | | |||||||||| |
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|
| T |
41043786 |
actgatggagtgatcttttttattgcaccacaagacactgtgattccaccccactcaacaagtgcacgttttggagtagttgatatagaaaatgcttaca |
41043885 |
T |
|
| Q |
101 |
atcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttcgaccaagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| | |||||||| |||| | ||||||||||||||| |||||||| ||||||||| |||||| |
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|
| T |
41043886 |
atcaatttgttggtgtagagtttgacctttataccaatattcttgatcccaatatgaaacatattggaatcgatatcaactctttaatttcgagcaagat |
41043985 |
T |
|
| Q |
201 |
cgtggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacacattgagtgttgttgtcatacatgcc |
300 |
Q |
| |
|
||||||||||| |||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||||||||| |||||| ||| | |
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|
| T |
41043986 |
cgtggaatggg------aatgggtgagtggatcattgactcaagtaagtgtagcctatgactttccctctaagacattgagtgttcttgtcacttatgac |
41044079 |
T |
|
| Q |
301 |
aatggcaaaattgttaccattgctgacatagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctgctgcttcaataactg |
394 |
Q |
| |
|
||| ||||||||| |||| ||||| | ||| ||||||||||||| ||||||||||||||| ||||| |||||||| ||| |||||||||||||| |
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|
| T |
41044080 |
aatcgcaaaattgctacccttgctcaaataattgatttgaaaaccgtgctccccaacacgattaggcttggtctagctggtgcttcaataactg |
41044173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 41074111 - 41074145
Alignment:
| Q |
91 |
aatgcttacaatcaatttgttggtgtagagtttga |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
41074111 |
aatgcttacaatcaatttgttggtgtagagtttga |
41074145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 41047360 - 41047304
Alignment:
| Q |
83 |
attcaaagaatgcttacaatcaatttgttggtgtagagtttgacctttatcccaata |
139 |
Q |
| |
|
||||||| ||||||| ||| ||||||||||||||||||||||| |||| |||||| |
|
|
| T |
41047360 |
attcaaataatgcttttaataaatttgttggtgtagagtttgacacttatgccaata |
41047304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 4 - 396
Target Start/End: Complemental strand, 8496198 - 8495812
Alignment:
| Q |
4 |
gatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaaagaatgcttacaatc |
103 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| || | || ||||| ||||||||||||| | | ||||||||| |
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|
| T |
8496198 |
gatggattggtcttctttattgcaccacaagacactgtgattccacccaactcagaaagtctacatcttggagtagttgattcaaaaagttcttacaatc |
8496099 |
T |
|
| Q |
104 |
aatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttcgaccaagatcgt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| ||||| ||| |
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|
| T |
8496098 |
aatttgttggtgtagagtttgacctttatcccaatagttttgatcccaatacgagacatattggaatcgatgtcaactctttaatttctctcaagaccgt |
8495999 |
T |
|
| Q |
204 |
ggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacacattgagtgttgttgtcatacatgccaat |
303 |
Q |
| |
|
| ||||| ||| | ||||| |||||||| | ||||||| ||||| ||||||||| |||| |||||||||||||||||||||| |||||||| |
|
|
| T |
8495998 |
------gaattggcaatttgcgagtggatcattgactaaagtaagcatagcttatgactcttcctcaaacacattgagtgttgttgtcacttatgccaat |
8495905 |
T |
|
| Q |
304 |
ggcaaaattgttaccattgctgacatagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctgctgcttcaataactggt |
396 |
Q |
| |
|
|| ||| || ||||||||| | ||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8495904 |
ggaaaattttccaccattgctcaaatagttgatttgaaaacagtgctccccaacaaggttaggtttggtctatctggtgcttcaataactggt |
8495812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 328 - 396
Target Start/End: Complemental strand, 8488368 - 8488300
Alignment:
| Q |
328 |
atagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctgctgcttcaataactggt |
396 |
Q |
| |
|
||||||||||||||||| |||||||| |||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8488368 |
atagttgatttgaaaacagtgctccctaacaaggttaggtttggtctatctggtgcttcaataactggt |
8488300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 21489359 - 21489406
Alignment:
| Q |
242 |
aagtaagtatagcctatgactctccctctaacacattgagtgttgttg |
289 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21489359 |
aagtaagtataatctatgactctccctctaacacattgagtgttgttg |
21489406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 126
Target Start/End: Original strand, 21482869 - 21482904
Alignment:
| Q |
91 |
aatgcttacaatcaatttgttggtgtagagtttgac |
126 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21482869 |
aatgctttcaatcaatttgttggtgtagagtttgac |
21482904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 126
Target Start/End: Original strand, 21493021 - 21493056
Alignment:
| Q |
91 |
aatgcttacaatcaatttgttggtgtagagtttgac |
126 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21493021 |
aatgctttcaatcaatttgttggtgtagagtttgac |
21493056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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