View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850_low_33 (Length: 413)

Name: NF7850_low_33
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850_low_33
NF7850_low_33
[»] chr4 (10 HSPs)
chr4 (13-396)||(30836827-30837211)
chr4 (189-298)||(3522376-3522485)
chr4 (24-70)||(32538350-32538396)
chr4 (24-69)||(53535991-53536036)
chr4 (23-65)||(1736121-1736163)
chr4 (23-65)||(40240403-40240445)
chr4 (23-65)||(40240740-40240782)
chr4 (24-65)||(12375987-12376028)
chr4 (24-65)||(36480570-36480611)
chr4 (24-64)||(35631165-35631205)
[»] chr3 (13 HSPs)
chr3 (136-396)||(3349691-3349950)
chr3 (17-73)||(33304985-33305041)
chr3 (24-73)||(1388122-1388171)
chr3 (17-73)||(54203493-54203549)
chr3 (26-65)||(5136587-5136626)
chr3 (26-73)||(44687476-44687523)
chr3 (27-73)||(3350038-3350084)
chr3 (26-64)||(13742750-13742788)
chr3 (24-69)||(42148294-42148339)
chr3 (26-64)||(5138301-5138339)
chr3 (32-70)||(44685870-44685908)
chr3 (24-65)||(40798994-40799035)
chr3 (24-69)||(52514290-52514335)
[»] chr2 (16 HSPs)
chr2 (136-393)||(43977800-43978056)
chr2 (136-322)||(17912262-17912448)
chr2 (315-396)||(17912801-17912881)
chr2 (18-73)||(43978143-43978198)
chr2 (27-73)||(17688288-17688334)
chr2 (17-73)||(28138310-28138366)
chr2 (24-69)||(2528671-2528716)
chr2 (27-64)||(39378348-39378385)
chr2 (18-70)||(17688786-17688838)
chr2 (25-73)||(17913027-17913075)
chr2 (19-65)||(16340577-16340623)
chr2 (24-70)||(33667766-33667812)
chr2 (24-65)||(12252121-12252162)
chr2 (18-70)||(43977586-43977639)
chr2 (24-64)||(38779674-38779714)
chr2 (24-64)||(39033552-39033592)
[»] chr7 (15 HSPs)
chr7 (136-396)||(35200373-35200632)
chr7 (136-392)||(4997513-4997767)
chr7 (18-69)||(40323660-40323711)
chr7 (19-70)||(31873395-31873446)
chr7 (24-70)||(31873849-31873895)
chr7 (18-71)||(36185583-36185636)
chr7 (29-65)||(19804630-19804666)
chr7 (30-73)||(4997852-4997895)
chr7 (18-56)||(36185182-36185220)
chr7 (18-73)||(35200785-35200841)
chr7 (24-71)||(30468452-30468499)
chr7 (24-69)||(18219985-18220030)
chr7 (24-65)||(29097890-29097931)
chr7 (24-65)||(48901472-48901513)
chr7 (24-64)||(47750526-47750566)
[»] chr1 (23 HSPs)
chr1 (26-73)||(52427518-52427565)
chr1 (18-73)||(253302-253357)
chr1 (18-73)||(32160725-32160780)
chr1 (18-65)||(32161325-32161372)
chr1 (18-73)||(33206028-33206083)
chr1 (18-73)||(20114598-20114653)
chr1 (13-62)||(21263357-21263406)
chr1 (24-73)||(26944478-26944527)
chr1 (18-71)||(46320480-46320533)
chr1 (24-64)||(15660260-15660300)
chr1 (29-73)||(15659871-15659915)
chr1 (25-69)||(28456453-28456497)
chr1 (24-64)||(33205483-33205523)
chr1 (27-70)||(7820132-7820175)
chr1 (27-70)||(15354184-15354227)
chr1 (26-69)||(49875008-49875051)
chr1 (26-69)||(49875365-49875408)
chr1 (23-65)||(9618719-9618761)
chr1 (24-65)||(6328897-6328938)
chr1 (24-69)||(28456747-28456792)
chr1 (24-65)||(51461883-51461924)
chr1 (24-64)||(26607466-26607506)
chr1 (13-65)||(26945247-26945299)
[»] chr8 (14 HSPs)
chr8 (25-73)||(27704555-27704603)
chr8 (18-73)||(7577613-7577668)
chr8 (18-73)||(27704054-27704109)
chr8 (26-73)||(7577117-7577164)
chr8 (26-73)||(37577755-37577802)
chr8 (26-69)||(43519906-43519949)
chr8 (24-65)||(3695369-3695410)
chr8 (24-65)||(22960648-22960689)
chr8 (24-65)||(30026264-30026305)
chr8 (24-65)||(34503092-34503133)
chr8 (24-65)||(36345005-36345046)
chr8 (24-65)||(38133172-38133213)
chr8 (24-69)||(44886826-44886871)
chr8 (24-64)||(23508596-23508636)
[»] chr5 (7 HSPs)
chr5 (24-64)||(35777049-35777089)
chr5 (29-73)||(2532526-2532570)
chr5 (13-73)||(9070418-9070478)
chr5 (27-70)||(2532088-2532131)
chr5 (24-69)||(8680272-8680317)
chr5 (24-73)||(29413301-29413350)
chr5 (29-73)||(18848037-18848081)
[»] scaffold0153 (2 HSPs)
scaffold0153 (18-73)||(16886-16941)
scaffold0153 (24-73)||(17388-17437)
[»] chr6 (5 HSPs)
chr6 (18-73)||(11687917-11687972)
chr6 (18-64)||(11687452-11687498)
chr6 (24-64)||(117260-117300)
chr6 (24-64)||(13164291-13164331)
chr6 (25-73)||(25987138-25987186)
[»] scaffold0283 (1 HSPs)
scaffold0283 (24-69)||(530-575)


Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 396
Target Start/End: Complemental strand, 30837211 - 30836827
Alignment:
Q  13 aatatccctgtggcagttaactaccgaagtttggaaccggctgcagttaactatcgaagttaacagccgatggaaaagtaaagnnnnnnnncctccgaag 112  Q
    ||||||||||| |||||||||||  ||||||||||||||| |||| |||||||||||||||||| ||||||||||||| ||||        |||||||||    
T  30837211 aatatccctgtagcagttaactattgaagtttggaaccggttgcaattaactatcgaagttaactgccgatggaaaaggaaagaaaaaaaacctccgaag 30837112  T
Q  113 aactaactcatcaaannnnnnnn-aaaccaaacagcatgttaaaataactctattgaactatggacaatatgattgattagccaagaaatgacatgttaa 211  Q
    ||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30837111 aactaactcatcaattttttttttaaaccaaacagcatgttaaaataactctattgaactatggacaatatgattgattagccaagaaatgacatgttaa 30837012  T
Q  212 aataacttcgttattacgttgccttcaaatttattgctcagctaataaatagtatgggttgtatggaacaggtttggcagatttaaaaatgctgaaacac 311  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30837011 aataacttcgttactacgttgccttcaaatttattgctcagctaataaatagtatgggttgtatggaacaggtttggcagatataaaaatgctgaaacac 30836912  T
Q  312 ttgatattttaattaggacagagggtgtaattttctatgtgcactttgtattattcttcattcacagctaatcacatagactgtg 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30836911 ttgatattttaattaggacagagggtgtaattttctatgtgcactttgtattattcttcattcacagctaatcacatagactgtg 30836827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 3522485 - 3522376
Alignment:
Q  189 ttagccaagaaatgacatgttaaaataacttcgttattacgttgccttcaaatttattgctcagctaataaatagtatgggttgtatggaacaggtttgg 288  Q
    ||||||||||||||||||||| |||||||| |||||||| |||| |||||||||||||| ||| |||| ||||| |||||   ||||||| ||||||||     
T  3522485 ttagccaagaaatgacatgttcaaataactacgttattaagttggcttcaaatttattgatcaactaacaaataatatggtacgtatggagcaggtttgt 3522386  T
Q  289 cagatttaaa 298  Q
    ||||| ||||    
T  3522385 cagatataaa 3522376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 32538396 - 32538350
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaactatcgaa 70  Q
    ||||||||||| ||||| | |||||||||||||||||||||||||||    
T  32538396 ggcagttaactgccgaattatggaaccggctgcagttaactatcgaa 32538350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 53535991 - 53536036
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaactatcga 69  Q
    ||||||||||| ||||| | ||||||||||||||||||||||||||    
T  53535991 ggcagttaactgccgaattatggaaccggctgcagttaactatcga 53536036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 1736163 - 1736121
Alignment:
Q  23 tggcagttaactaccgaagtttggaaccggctgcagttaacta 65  Q
    |||||||||||| ||||| | ||||||||||||||||||||||    
T  1736163 tggcagttaactgccgaattatggaaccggctgcagttaacta 1736121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 40240445 - 40240403
Alignment:
Q  23 tggcagttaactaccgaagtttggaaccggctgcagttaacta 65  Q
    |||||||||||| ||||| | ||||||||||||||||||||||    
T  40240445 tggcagttaactgccgaattgtggaaccggctgcagttaacta 40240403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 40240782 - 40240740
Alignment:
Q  23 tggcagttaactaccgaagtttggaaccggctgcagttaacta 65  Q
    |||||||||||| ||||| | ||||||||||||||||||||||    
T  40240782 tggcagttaactgccgaattatggaaccggctgcagttaacta 40240740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 12375987 - 12376028
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaacta 65  Q
    ||||||||||| ||||| | ||||||||||||||||||||||    
T  12375987 ggcagttaactgccgaattatggaaccggctgcagttaacta 12376028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 36480611 - 36480570
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaacta 65  Q
    ||||||||||| ||||| | ||||||||||||||||||||||    
T  36480611 ggcagttaactgccgaattatggaaccggctgcagttaacta 36480570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 35631165 - 35631205
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaact 64  Q
    ||||||||||| ||||| | |||||||||||||||||||||    
T  35631165 ggcagttaactgccgaattatggaaccggctgcagttaact 35631205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 136 - 396
Target Start/End: Complemental strand, 3349950 - 3349691
Alignment:
Q  136 aaaccaaacagcatgttaaaataactctattgaactatggacaatatgattgattagccaagaaatgacatgttaaaataacttcgttattacgttgcct 235  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||    
T  3349950 aaaccaaacagcatgttaaaataactgtattgaactatggacaatatgattgattagccaagaaatgacaggttaaaattacttcgttactgcgttgcct 3349851  T
Q  236 tcaaatttattgctcagctaataaatagtatgggttgtatggaacaggtttggcagatttaaaaatgctgaaacacttgatattttaattaggacagagg 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||| |||    
T  3349850 tcaaatttattgctcagctaataaatagtatgggttgtatggaactggtttggcagatataaaaatgctgaaacaattgatattttaattaggacaaagg 3349751  T
Q  336 gtgtaattttctatgtgcactttgtattattcttcattcacagctaatcacatagactgtg 396  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  3349750 gtgtaattttctatgtgcactttgtattattc-acattcacagctaatcacatagactgtg 3349691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 33305041 - 33304985
Alignment:
Q  17 tccctgtggcagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| | |||||||    
T  33305041 tccctgcggcagttaactaccgaagtttggaaccggctgcagttaacaaccgaagtt 33304985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 1388171 - 1388122
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  1388171 ggcagttaactaccgaagtttggaatcggctgcagttaactaccgaagtt 1388122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 54203493 - 54203549
Alignment:
Q  17 tccctgtggcagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    |||||| |||| ||||||||| ||||||||||||||||||||||||||  |||||||    
T  54203493 tccctgcggcaattaactaccaaagtttggaaccggctgcagttaactcccgaagtt 54203549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 5136587 - 5136626
Alignment:
Q  26 cagttaactaccgaagtttggaaccggctgcagttaacta 65  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  5136587 cagttaactaccgaaatttggaaccggctgcagttaacta 5136626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 44687523 - 44687476
Alignment:
Q  26 cagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    ||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  44687523 cagttaactaccgaagtttagaactggctgcagttaactattgaagtt 44687476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 3350084 - 3350038
Alignment:
Q  27 agttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    ||||||||||||||||||| || |||||||||||||||| |||||||    
T  3350084 agttaactaccgaagtttgaaatcggctgcagttaactaccgaagtt 3350038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 13742750 - 13742788
Alignment:
Q  26 cagttaactaccgaagtttggaaccggctgcagttaact 64  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  13742750 cagttaactaccgaagtttgaaaccggctgcagttaact 13742788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 42148294 - 42148339
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaactatcga 69  Q
    ||||||||||| ||||| | ||||||||||||||||||||||||||    
T  42148294 ggcagttaactgccgaattatggaaccggctgcagttaactatcga 42148339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 5138339 - 5138301
Alignment:
Q  26 cagttaactaccgaagtttggaaccggctgcagttaact 64  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  5138339 cagttaactaccgaagtttggaaccagctacagttaact 5138301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 44685870 - 44685908
Alignment:
Q  32 actaccgaagtttggaaccggctgcagttaactatcgaa 70  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  44685870 actaccgaagtttgaaaccggctgcagttaactaccgaa 44685908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 40799035 - 40798994
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaacta 65  Q
    ||||||||||| ||||| | ||||||||||||||||||||||    
T  40799035 ggcagttaactgccgaattatggaaccggctgcagttaacta 40798994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 52514290 - 52514335
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaactatcga 69  Q
    |||| |||||| ||||| | ||||||||||||||||||||||||||    
T  52514290 ggcaattaactgccgaattatggaaccggctgcagttaactatcga 52514335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 136 - 393
Target Start/End: Complemental strand, 43978056 - 43977800
Alignment:
Q  136 aaaccaaacagcatgttaaaataactctattgaactatggacaatatgattgattagccaagaaatgacatgttaaaataacttcgttattacgttgcct 235  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||    
T  43978056 aaaccaaacagcatgttaaaataactgtattgaactatggacaatatgattgattagccaagaaatgacaggttaaaattacttcgttactgcgttgcct 43977957  T
Q  236 tcaaatttattgctcagctaataaatagtatgggttgtatggaacaggtttggcagatttaaaaatgctgaaacacttgatattttaattaggacagagg 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||| |||    
T  43977956 tcaaatttattgctcagctaataaatagtatgggttgtatggaactggtttggcagatataaaaatgctgaaacaattgatattttaattaggacaaagg 43977857  T
Q  336 gtgtaattttctatgtgcactttgtattattcttcattcacagctaatcacatagact 393  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  43977856 gtgtaattttctatgtgcactttgtattattc-acattcacagctaatcacatagact 43977800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 136 - 322
Target Start/End: Original strand, 17912262 - 17912448
Alignment:
Q  136 aaaccaaacagcatgttaaaataactctattgaactatggacaatatgattgattagccaagaaatgacatgttaaaataacttcgttattacgttgcct 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  17912262 aaaccaaacagcatgttaaaataactctattgaactatggacaatatgattgattagccgagaaatgacatgttaaaataacttcgttactacgttgcct 17912361  T
Q  236 tcaaatttattgctcagctaataaatagtatgggttgtatggaacaggtttggcagatttaaaaatgctgaaacacttgatatttta 322  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  17912362 tcaaatttattgctcggctaatcaatagtatgggttgtatggaacaggtttggcagatataaaaatgctgaaacaattgatatttta 17912448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 396
Target Start/End: Original strand, 17912801 - 17912881
Alignment:
Q  315 atattttaattaggacagagggtgtaattttctatgtgcactttgtattattcttcattcacagctaatcacatagactgtg 396  Q
    ||||||||||| ||| | | ||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||    
T  17912801 atattttaatttggataaacggtgtaattttctatctgcactttgtattattc-tcattcacagttaatcacatagactgtg 17912881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 43978198 - 43978143
Alignment:
Q  18 ccctgtggcagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    ||||| || ||||||||||||||||||| || ||||||||||||||||||||||||    
T  43978198 ccctgcggtagttaactaccgaagtttgaaatcggctgcagttaactatcgaagtt 43978143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 17688288 - 17688334
Alignment:
Q  27 agttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||    
T  17688288 agttaactactgaagtttggaaccggctgcagttaactaccgaagtt 17688334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 28138366 - 28138310
Alignment:
Q  17 tccctgtggcagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    |||||| | |||||||||||||| ||||||||||||||||||||||||  |||||||    
T  28138366 tccctgcgacagttaactaccgatgtttggaaccggctgcagttaactcccgaagtt 28138310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 2528671 - 2528716
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaactatcga 69  Q
    ||||||||||| ||||| | ||||||||||||||||||||||||||    
T  2528671 ggcagttaactgccgaattatggaaccggctgcagttaactatcga 2528716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 39378385 - 39378348
Alignment:
Q  27 agttaactaccgaagtttggaaccggctgcagttaact 64  Q
    |||||||||||||||||||||| |||||||||||||||    
T  39378385 agttaactaccgaagtttggaatcggctgcagttaact 39378348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 17688838 - 17688786
Alignment:
Q  18 ccctgtggcagttaactaccgaagtttggaaccggctgcagttaactatcgaa 70  Q
    ||||| || ||||||||||||||||||||||| ||| ||||||||||| ||||    
T  17688838 ccctgcggtagttaactaccgaagtttggaactggcggcagttaactaccgaa 17688786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 17913075 - 17913027
Alignment:
Q  25 gcagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    ||||||||||||||||||||  || ||||||||||||| ||||||||||    
T  17913075 gcagttaactaccgaagtttaaaatcggctgcagttaattatcgaagtt 17913027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 16340623 - 16340577
Alignment:
Q  19 cctgtggcagttaactaccgaagtttggaaccggctgcagttaacta 65  Q
    |||| |||||||||||||||||||  |||||||| ||||||||||||    
T  16340623 cctgcggcagttaactaccgaagtaaggaaccggttgcagttaacta 16340577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 33667766 - 33667812
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaactatcgaa 70  Q
    ||||||||||||||||| |   |||||||||||||||||||||||||    
T  33667766 ggcagttaactaccgaaataatgaaccggctgcagttaactatcgaa 33667812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 12252121 - 12252162
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaacta 65  Q
    ||||||||||| ||||| | ||||||||||||||||||||||    
T  12252121 ggcagttaactgccgaattatggaaccggctgcagttaacta 12252162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 43977586 - 43977639
Alignment:
Q  18 ccctgtggcagttaactaccgaagtttggaa-ccggctgcagttaactatcgaa 70  Q
    ||||| ||||| ||||||||||||||| ||| ||||||||||||||||| ||||    
T  43977586 ccctgcggcagctaactaccgaagttttgaaaccggctgcagttaactaccgaa 43977639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 38779714 - 38779674
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaact 64  Q
    ||||||||||| ||||| | |||||||||||||||||||||    
T  38779714 ggcagttaactgccgaattatggaaccggctgcagttaact 38779674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 39033592 - 39033552
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaact 64  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  39033592 ggcagttaactaccgaattatgaaaccggctgcagttaact 39033552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 136 - 396
Target Start/End: Original strand, 35200373 - 35200632
Alignment:
Q  136 aaaccaaacagcatgttaaaataactctattgaactatggacaatatgattgattagccaagaaatgacatgttaaaataacttcgttattacgttgcct 235  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||    
T  35200373 aaaccaaacagcatgttaaaataactgtattgaactatggacaatatgattgattagccaagaaatgacaggttaaaattacttcgttactgcgttgcct 35200472  T
Q  236 tcaaatttattgctcagctaataaatagtatgggttgtatggaacaggtttggcagatttaaaaatgctgaaacacttgatattttaattaggacagagg 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||| |||||||||||||||||||| |||    
T  35200473 tcaaatttattgctcagctaataaatagtatgggttgtatggaattggtttggcagatataaaaatgctgaaacaattgatattttaattaggacaaagg 35200572  T
Q  336 gtgtaattttctatgtgcactttgtattattcttcattcacagctaatcacatagactgtg 396  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||    
T  35200573 gtgtaattttctatgtgcattttgtattattc-acattcacagctaatcacatagactgtg 35200632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 136 - 392
Target Start/End: Complemental strand, 4997767 - 4997513
Alignment:
Q  136 aaaccaaacagcatgttaaaataactctattgaactatggacaatatgattgattagccaagaaatgacatgttaaaataacttcgttattacgttgcct 235  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||    
T  4997767 aaaccaaacagcatgttaaaataactgtattgaactatggacaatatgattgattagccaagaaatgacaggttaaaattacttcgttactgcgttgcct 4997668  T
Q  236 tcaaatttattgctcagctaataaatagtatgggttgtatggaacaggtttggcagatttaaaaatgctgaaacacttgatattttaattaggacagagg 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||| | |    
T  4997667 tcaaatttattgctcagctaataaatagtatgggttgtatggaactggtttggcagatataaaaatgctgaaacaattgatattttaattaggaca-aag 4997569  T
Q  336 gtgtaattttctatgtgcactttgtattattcttcattcacagctaatcacatagac 392  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  4997568 gtgtaattttctatgtgcactttgtattattc-acattcacagctaatcacatagac 4997513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 40323711 - 40323660
Alignment:
Q  18 ccctgtggcagttaactaccgaagtttggaaccggctgcagttaactatcga 69  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  40323711 ccctgcggcagttaactaccgaagtttggaaccggctgcagttaactgtcga 40323660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 31873395 - 31873446
Alignment:
Q  19 cctgtggcagttaactaccgaagtttggaaccggctgcagttaactatcgaa 70  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||||||    
T  31873395 cctgcggcagttaactaccgaagtttagaaccgactgcagttaactatcgaa 31873446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 31873895 - 31873849
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaactatcgaa 70  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||    
T  31873895 ggcagttaactaccgatgtttggaaccggctgcagttaactaccgaa 31873849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 36185636 - 36185583
Alignment:
Q  18 ccctgtggcagttaactaccgaagtttggaaccggctgcagttaactatcgaag 71  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||||||| |||||    
T  36185636 ccctgcggcagttcactaccgaaatttggaaccggctgcagttaactaccgaag 36185583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 19804666 - 19804630
Alignment:
Q  29 ttaactaccgaagtttggaaccggctgcagttaacta 65  Q
    |||||||||||||||||||||||||||||||||||||    
T  19804666 ttaactaccgaagtttggaaccggctgcagttaacta 19804630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 4997895 - 4997852
Alignment:
Q  30 taactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    |||||||||||||||| || ||||||||||||||||||||||||    
T  4997895 taactaccgaagtttgaaatcggctgcagttaactatcgaagtt 4997852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 36185182 - 36185220
Alignment:
Q  18 ccctgtggcagttaactaccgaagtttggaaccggctgc 56  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  36185182 ccctgcggcagttaactaccgaagtttggaaccggctgc 36185220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 35200841 - 35200785
Alignment:
Q  18 ccctgtggcagttaactaccgaagtttggaa-ccggctgcagttaactatcgaagtt 73  Q
    ||||| |||||||| |||||||||||| ||| ||||||||||||||||| |||||||    
T  35200841 ccctgcggcagttagctaccgaagttttgaaaccggctgcagttaactaccgaagtt 35200785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 30468452 - 30468499
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaactatcgaag 71  Q
    |||| |||||| ||||| | ||||||||||||||||||||||||||||    
T  30468452 ggcatttaactgccgaattatggaaccggctgcagttaactatcgaag 30468499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 18220030 - 18219985
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaactatcga 69  Q
    ||||||||| | ||||| | ||||||||||||||||||||||||||    
T  18220030 ggcagttaattgccgaattatggaaccggctgcagttaactatcga 18219985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 29097931 - 29097890
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaacta 65  Q
    ||||||||||| ||||| | ||||||||||||||||||||||    
T  29097931 ggcagttaactgccgaattatggaaccggctgcagttaacta 29097890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 48901513 - 48901472
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaacta 65  Q
    ||||||||||| ||||| | ||||||||||||||||||||||    
T  48901513 ggcagttaactgccgaattatggaaccggctgcagttaacta 48901472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 47750526 - 47750566
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaact 64  Q
    ||||||||||| ||||| | |||||||||||||||||||||    
T  47750526 ggcagttaactgccgaattatggaaccggctgcagttaact 47750566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 52427565 - 52427518
Alignment:
Q  26 cagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52427565 cagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 52427518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 253357 - 253302
Alignment:
Q  18 ccctgtggcagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||| |||||||    
T  253357 ccctgcggtagttaactaccgaagtttggaaccggctgcagttaactaccgaagtt 253302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 32160725 - 32160780
Alignment:
Q  18 ccctgtggcagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||  |||||||    
T  32160725 ccctgcggcagttaactaccgaagtttggaaccggctgcagttaacttccgaagtt 32160780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 32161372 - 32161325
Alignment:
Q  18 ccctgtggcagttaactaccgaagtttggaaccggctgcagttaacta 65  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32161372 ccctgcggcagttaactaccgaagtttggaaccggctgcagttaacta 32161325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 33206083 - 33206028
Alignment:
Q  18 ccctgtggcagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  33206083 ccctgcggcagttaattaccgaagtttggaaccggctgcagttaactaccgaagtt 33206028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 20114598 - 20114653
Alignment:
Q  18 ccctgtggcagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    ||||| || ||||||||||||||||| ||||||||||||||||||||| |||||||    
T  20114598 ccctgcggtagttaactaccgaagttgggaaccggctgcagttaactaccgaagtt 20114653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 21263357 - 21263406
Alignment:
Q  13 aatatccctgtggcagttaactaccgaagtttggaaccggctgcagttaa 62  Q
    |||| ||||| |||||||||||||||||||||||||||| ||||||||||    
T  21263357 aatacccctgcggcagttaactaccgaagtttggaaccgactgcagttaa 21263406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 26944478 - 26944527
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    |||||||||||| ||||||||||||||||||||||||||||  |||||||    
T  26944478 ggcagttaactatcgaagtttggaaccggctgcagttaactcccgaagtt 26944527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 46320533 - 46320480
Alignment:
Q  18 ccctgtggcagttaactaccgaagtttggaaccggctgcagttaactatcgaag 71  Q
    ||||| || ||||||||||||||||||| ||||||||||||||||||| |||||    
T  46320533 ccctgcggtagttaactaccgaagtttgaaaccggctgcagttaactaccgaag 46320480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 15660300 - 15660260
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaact 64  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  15660300 ggcagttaactaccgatgtttggaaccggctgcagttaact 15660260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 15659871 - 15659915
Alignment:
Q  29 ttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    ||||||| |||||||||||||||||| ||||||||||| ||||||    
T  15659871 ttaactatcgaagtttggaaccggctacagttaactattgaagtt 15659915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 28456453 - 28456497
Alignment:
Q  25 gcagttaactaccgaagtttggaaccggctgcagttaactatcga 69  Q
    |||||||||| ||||| | ||||||||||||||||||||||||||    
T  28456453 gcagttaactgccgaattatggaaccggctgcagttaactatcga 28456497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 33205483 - 33205523
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaact 64  Q
    |||||||| ||||||||||||||||||||||| ||||||||    
T  33205483 ggcagttacctaccgaagtttggaaccggctgtagttaact 33205523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 7820132 - 7820175
Alignment:
Q  27 agttaactaccgaagtttggaaccggctgcagttaactatcgaa 70  Q
    |||||||| ||||| | |||||||||||||||||||||||||||    
T  7820132 agttaactgccgaattatggaaccggctgcagttaactatcgaa 7820175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 15354184 - 15354227
Alignment:
Q  27 agttaactaccgaagtttggaaccggctgcagttaactatcgaa 70  Q
    ||||||||| |||||||||||||||||| |||||||||| ||||    
T  15354184 agttaactatcgaagtttggaaccggctacagttaactaccgaa 15354227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 49875008 - 49875051
Alignment:
Q  26 cagttaactaccgaagtttggaaccggctgcagttaactatcga 69  Q
    ||||||||| ||||| | ||||||||||||||||||||||||||    
T  49875008 cagttaactgccgaattatggaaccggctgcagttaactatcga 49875051  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 49875408 - 49875365
Alignment:
Q  26 cagttaactaccgaagtttggaaccggctgcagttaactatcga 69  Q
    ||||||||||||||| | |||||||| |||||||||||||||||    
T  49875408 cagttaactaccgaattatggaaccgactgcagttaactatcga 49875365  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 9618719 - 9618761
Alignment:
Q  23 tggcagttaactaccgaagtttggaaccggctgcagttaacta 65  Q
    |||||||||||| ||||| | ||||||||||||||||||||||    
T  9618719 tggcagttaactgccgaattatggaaccggctgcagttaacta 9618761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 6328938 - 6328897
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaacta 65  Q
    ||||||||||| ||||| | ||||||||||||||||||||||    
T  6328938 ggcagttaactgccgaattatggaaccggctgcagttaacta 6328897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 28456792 - 28456747
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaactatcga 69  Q
    ||||||||||| ||||| | | ||||||||||||||||||||||||    
T  28456792 ggcagttaactgccgaattatagaaccggctgcagttaactatcga 28456747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 51461924 - 51461883
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaacta 65  Q
    ||||||||||| ||||| | ||||||||||||||||||||||    
T  51461924 ggcagttaactgccgaattgtggaaccggctgcagttaacta 51461883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 26607506 - 26607466
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaact 64  Q
    ||||||||||| ||||| | |||||||||||||||||||||    
T  26607506 ggcagttaactgccgaattatggaaccggctgcagttaact 26607466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 26945299 - 26945247
Alignment:
Q  13 aatatccctgtggcagttaactaccgaagtttggaaccggctgcagttaacta 65  Q
    ||||||| || ||||||||||||||||||||| ||| || || ||||||||||    
T  26945299 aatatccatgcggcagttaactaccgaagtttagaatcgactacagttaacta 26945247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 27704603 - 27704555
Alignment:
Q  25 gcagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  27704603 gcagttaactaccgaagtttgaaaccggctgcagttaactaccgaagtt 27704555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 7577668 - 7577613
Alignment:
Q  18 ccctgtggcagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    ||||| |||| ||||||||||||||||| ||||||||||||||||||| |||||||    
T  7577668 ccctgcggcaattaactaccgaagtttgaaaccggctgcagttaactaccgaagtt 7577613  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 27704054 - 27704109
Alignment:
Q  18 ccctgtggcagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||  |||||||    
T  27704054 ccctgcggcagttaactaccgaagtttggaaccggctgcaattaactcccgaagtt 27704109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 7577117 - 7577164
Alignment:
Q  26 cagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    |||||||||||||||||||||||||||||||| ||||||  |||||||    
T  7577117 cagttaactaccgaagtttggaaccggctgcaattaactcccgaagtt 7577164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 37577802 - 37577755
Alignment:
Q  26 cagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    ||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  37577802 cagttaactaccgaagttttgaaccggctgcaattaactaccgaagtt 37577755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 43519906 - 43519949
Alignment:
Q  26 cagttaactaccgaagtttggaaccggctgcagttaactatcga 69  Q
    ||||||||| ||||| | ||||||||||||||||||||||||||    
T  43519906 cagttaactgccgaattatggaaccggctgcagttaactatcga 43519949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 3695369 - 3695410
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaacta 65  Q
    ||||||||||| ||||| | ||||||||||||||||||||||    
T  3695369 ggcagttaactgccgaattatggaaccggctgcagttaacta 3695410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 22960648 - 22960689
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaacta 65  Q
    ||||||||||| ||||| | ||||||||||||||||||||||    
T  22960648 ggcagttaactgccgaattatggaaccggctgcagttaacta 22960689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 30026305 - 30026264
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaacta 65  Q
    ||||||||||| ||||| | ||||||||||||||||||||||    
T  30026305 ggcagttaactgccgaattatggaaccggctgcagttaacta 30026264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 34503133 - 34503092
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaacta 65  Q
    ||||||||||| ||||| | ||||||||||||||||||||||    
T  34503133 ggcagttaactgccgaattatggaaccggctgcagttaacta 34503092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 36345005 - 36345046
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaacta 65  Q
    ||||||||||| ||||| | ||||||||||||||||||||||    
T  36345005 ggcagttaactgccgaattatggaaccggctgcagttaacta 36345046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 38133172 - 38133213
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaacta 65  Q
    ||||||||||| ||||| | ||||||||||||||||||||||    
T  38133172 ggcagttaactgccgaattatggaaccggctgcagttaacta 38133213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 44886871 - 44886826
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaactatcga 69  Q
    ||||||||||| ||||| | ||||| ||||||||||||||||||||    
T  44886871 ggcagttaactgccgaattatggaatcggctgcagttaactatcga 44886826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 23508596 - 23508636
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaact 64  Q
    ||||||||||| ||||| | |||||||||||||||||||||    
T  23508596 ggcagttaactgccgaattatggaaccggctgcagttaact 23508636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 35777089 - 35777049
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaact 64  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35777089 ggcagttaactaccgaagtttggaaccggctgcagttaact 35777049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 2532570 - 2532526
Alignment:
Q  29 ttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    ||||||||||||||||||||||||||||||||||||  |||||||    
T  2532570 ttaactaccgaagtttggaaccggctgcagttaactcccgaagtt 2532526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 9070478 - 9070418
Alignment:
Q  13 aatatccctgtggcagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    ||||| |||| |||||||||||||||||||  |||||| |||||||||||||  |||||||    
T  9070478 aatattcctgcggcagttaactaccgaagtaaggaaccagctgcagttaacttccgaagtt 9070418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 2532088 - 2532131
Alignment:
Q  27 agttaactaccgaagtttggaaccggctgcagttaactatcgaa 70  Q
    ||||||||| ||||||||||||||||||||| ||||||| ||||    
T  2532088 agttaactatcgaagtttggaaccggctgcaattaactaccgaa 2532131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 8680317 - 8680272
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaactatcga 69  Q
    ||||||||||| ||||| | |||||| |||||||||||||||||||    
T  8680317 ggcagttaactgccgaattatggaacaggctgcagttaactatcga 8680272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 29413350 - 29413301
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    |||||||||||| ||||||||| ||  ||||||||||||||| |||||||    
T  29413350 ggcagttaactatcgaagtttgaaattggctgcagttaactaccgaagtt 29413301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 18848081 - 18848037
Alignment:
Q  29 ttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    ||||||||||||||||  ||||| ||||||||||||| |||||||    
T  18848081 ttaactaccgaagtttaaaaccgactgcagttaactaccgaagtt 18848037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 16886 - 16941
Alignment:
Q  18 ccctgtggcagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    ||||| || |||||||||||||||||||||||||| |||||||||||| |||||||    
T  16886 ccctgcggtagttaactaccgaagtttggaaccggttgcagttaactaccgaagtt 16941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 17437 - 17388
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    ||||||||||||||||| |   |||||||||||||||||||| |||||||    
T  17437 ggcagttaactaccgaaataatgaaccggctgcagttaactaccgaagtt 17388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 11687972 - 11687917
Alignment:
Q  18 ccctgtggcagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    ||||| ||||||||||||||||||||||||| |||||||| ||||||  |||||||    
T  11687972 ccctgcggcagttaactaccgaagtttggaatcggctgcaattaactcccgaagtt 11687917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 11687452 - 11687498
Alignment:
Q  18 ccctgtggcagttaactaccgaagtttggaaccggctgcagttaact 64  Q
    ||||| |||||||||||||||||||||  ||||||||||||||||||    
T  11687452 ccctgcggcagttaactaccgaagtttaaaaccggctgcagttaact 11687498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 117260 - 117300
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaact 64  Q
    ||||||||||| ||||| | |||||||||||||||||||||    
T  117260 ggcagttaactgccgaattatggaaccggctgcagttaact 117300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 13164331 - 13164291
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaact 64  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  13164331 ggcagttaactaccgaattatgaaaccggctgcagttaact 13164291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 25987138 - 25987186
Alignment:
Q  25 gcagttaactaccgaagtttggaaccggctgcagttaactatcgaagtt 73  Q
    |||||||||||||||| |   |||| |||||||||||||||||||||||    
T  25987138 gcagttaactaccgaaataatgaactggctgcagttaactatcgaagtt 25987186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 530 - 575
Alignment:
Q  24 ggcagttaactaccgaagtttggaaccggctgcagttaactatcga 69  Q
    ||||||||||| ||||| | ||||| ||||||||||||||||||||    
T  530 ggcagttaactgccgaattatggaatcggctgcagttaactatcga 575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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