View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850_low_34 (Length: 396)

Name: NF7850_low_34
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850_low_34
NF7850_low_34
[»] chr8 (4 HSPs)
chr8 (100-374)||(32848022-32848279)
chr8 (8-187)||(11364555-11364737)
chr8 (37-269)||(9617871-9618111)
chr8 (8-44)||(32847989-32848025)
[»] chr5 (2 HSPs)
chr5 (8-269)||(34272244-34272507)
chr5 (173-239)||(15027035-15027100)
[»] chr7 (6 HSPs)
chr7 (21-189)||(29367291-29367463)
chr7 (39-269)||(39773170-39773403)
chr7 (42-234)||(32471143-32471344)
chr7 (38-185)||(42863670-42863821)
chr7 (37-92)||(29346783-29346838)
chr7 (120-252)||(35199381-35199515)
[»] chr3 (5 HSPs)
chr3 (94-209)||(531151-531268)
chr3 (94-209)||(564106-564223)
chr3 (7-64)||(564224-564281)
chr3 (7-64)||(531269-531326)
chr3 (98-191)||(46505965-46506057)
[»] chr2 (3 HSPs)
chr2 (152-268)||(5699923-5700039)
chr2 (119-269)||(31380499-31380650)
chr2 (150-214)||(13266812-13266876)
[»] chr4 (3 HSPs)
chr4 (111-272)||(45610537-45610699)
chr4 (38-239)||(4848726-4848930)
chr4 (40-82)||(49272661-49272703)
[»] chr6 (3 HSPs)
chr6 (155-271)||(6919321-6919437)
chr6 (8-262)||(29181491-29181751)
chr6 (94-144)||(15091898-15091948)
[»] chr1 (5 HSPs)
chr1 (21-151)||(29274555-29274690)
chr1 (119-233)||(49138095-49138208)
chr1 (133-230)||(4625300-4625396)
chr1 (39-82)||(12900877-12900920)
chr1 (206-267)||(13399978-13400039)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 100 - 374
Target Start/End: Original strand, 32848022 - 32848279
Alignment:
Q  100 agatgagagagttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatcatgagccac 199  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32848022 agatgagagagttcatcaattttcttgatacccattattgatcatcatttctctatttatgcacaatccaaacttccttgattttaggatcatgagccac 32848121  T
Q  200 atgttcatttatctcaaccaatgatgttatgccaaatgtaattttttatatgccaatttgaatcataacaaaaatatatctcaattgacgaagttggtat 299  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||                 |||||||||||||    
T  32848122 atgttcatttacctcaaccaatgatgttatgccaaatgtaattttttatatgcaaatttgaatcataaca-----------------acgaagttggtat 32848204  T
Q  300 tgtttcgaggcggcctctaccgtgtgcaagttaaacatgccggtgcaacgtacgcaagggagctcatcctagtgc 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32848205 tgtttcgaggcggcctctaccgtgtgcaagttaaacatgccggtgcaatgtacgcaagggagctcatcctagtgc 32848279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 8 - 187
Target Start/End: Original strand, 11364555 - 11364737
Alignment:
Q  8 ttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagt---gagggagagatg 104  Q
    |||||||||||| |||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||| |  ||||||    | || |||| |    
T  11364555 ttggtgttcttagtacataaaagggaaaggaaaagatagaagaagaccaagtcgaaagacttaagccattactctacttgagagtaccaaaggggagagg 11364654  T
Q  105 agagagttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttagg 187  Q
    ||| | |   ||| |||||||||||||| ||| ||||||||| |||||||||||||||||||| || ||||||| ||||||||    
T  11364655 agatactatgtcatttttcttcataccccttagtgatcatcatttctctatttatgcacaatccaagcttccttaattttagg 11364737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 269
Target Start/End: Original strand, 9617871 - 9618111
Alignment:
Q  37 gaaaagatagaagaagactaagtccaaagacttaagccattactc----ttcaagagagtg----agggagagatgagagagttcatcagttttcttcat 128  Q
    ||||||||||||||||||||| | |||| ||||||| ||||||||    | | |||||||     ||| ||||| || ||| ||| ||| ||||||||||    
T  9617871 gaaaagatagaagaagactaaatacaaaaacttaagtcattactccctatactagagagtaccacaggaagagaggaaagacttcttcatttttcttcat 9617970  T
Q  129 acccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatcatgagccacatgttcatttatctcaaccaatgatgtta 228  Q
    ||  ||| ||| |||||  ||  || ||||||||||||| ||||||| |||||| ||||||||  |||||||| | | |||  |||||||||| ||| ||    
T  9617971 acttattgttgttcatccttttcctgtttatgcacaatccaaacttcattgattctaggatcactagccacatctccctttgcctcaaccaattatgata 9618070  T
Q  229 tgccaaatgtaattttttatatgccaatttgaatcataaca 269  Q
    || |||||||| || || |||||| | |||  |||||||||    
T  9618071 tgtcaaatgtatttcttcatatgctattttagatcataaca 9618111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 32847989 - 32848025
Alignment:
Q  8 ttggtgttcttaatacataaaagagataggaaaagat 44  Q
    |||||||||||||||||||||||||||||||||||||    
T  32847989 ttggtgttcttaatacataaaagagataggaaaagat 32848025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 34272507 - 34272244
Alignment:
Q  8 ttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagtg----agggagagat 103  Q
    ||||||||||||| | |||||| ||| ||| ||| ||| |||||||||||||| ||||||||||| ||||||||||| |||||||     | |||||||     
T  34272507 ttggtgttcttaaaagataaaa-agaaagggaaatataaaagaagactaagtc-aaagacttaagtcattactcttctagagagtactaaatggagaga- 34272411  T
Q  104 gagagag-ttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatcatgagccacatg 202  Q
    |||| |  ||||||| ||||||||||||||||||||  | |||| || ||||||||||||||||| || | ||||||||||||||||||  || ||||||    
T  34272410 gagaaaaattcatcaattttcttcatacccattattatttatcatttttctatttatgcacaatctaagcatccttgattttaggatcactagtcacatg 34272311  T
Q  203 ttcatttatctcaaccaatgatgttatgccaaatgtaattttttatatgccaatttgaatcataaca 269  Q
    | |||||| || ||||||| ||||||||||||||||| ||| | |||||| | ||||||||||||||    
T  34272310 tccatttacctaaaccaattatgttatgccaaatgtattttctcatatgctattttgaatcataaca 34272244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 15027035 - 15027100
Alignment:
Q  173 ttccttgattttaggatcatgagccacatgttcatttatctcaaccaatgatgttatgccaaatgta 239  Q
    |||||||||||||||||||  ||||   || ||||||| |||||||||| |||||||||||||||||    
T  15027035 ttccttgattttaggatcactagccgagtg-tcatttacctcaaccaattatgttatgccaaatgta 15027100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 21 - 189
Target Start/End: Original strand, 29367291 - 29367463
Alignment:
Q  21 tacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagt----gagggagagatgagagagttcatc 116  Q
    ||||||||||||| ||  || |||||||||||||||||||| |||||||||| ||||||||| | |||||||     || ||||||||| ||| ||||||    
T  29367291 tacataaaagagaaagagaaggatagaagaagactaagtcctaagacttaagtcattactctactagagagtattaaagagagagatgatagacttcatc 29367390  T
Q  117 agttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggat 189  Q
    | ||||||||||||||| | |||||||||| ||| ||||||||| | || | ||| ||| || ||||||||||    
T  29367391 acttttcttcatacccactgttgatcatcatttcactatttatgtataacccaaagttctttaattttaggat 29367463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 39 - 269
Target Start/End: Complemental strand, 39773403 - 39773170
Alignment:
Q  39 aaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagtg----agggagagatgagagagttcatcagttttcttcatacccat 134  Q
    ||||||||||||||||| |||| |||||| ||||||||||||||  | ||||||     ||||||| | ||||   ||| ||| | ||||||||||||||    
T  39773403 aaagatagaagaagacttagtctaaagacctaagccattactctcaaggagagtaccaaagggagaaa-gagacttttcttcaatattcttcatacccat 39773305  T
Q  135 tattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatcatgagccacatgttcatttatctcaaccaatgatgttatgccaa 234  Q
     | |||   ||| ||| ||| ||||  |||||  || ||||||| ||||||||||||  |||||||||| ||||| ||||||||||| |||||||||||     
T  39773304 caatgaaagtcatttcactaattatatacaattcaagcttccttaattttaggatcactagccacatgtccatttttctcaaccaattatgttatgccat 39773205  T
Q  235 atgtaattttttatatgccaatttgaatcataaca 269  Q
     |||||||  ||||||| || ||||||||||||||    
T  39773204 gtgtaattccttatatgtcattttgaatcataaca 39773170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 42 - 234
Target Start/End: Original strand, 32471143 - 32471344
Alignment:
Q  42 gatagaagaagactaagtccaaagacttaagccattactcttcaagagagtg----agggagagatgagagagttcatcagttttcttcataccca---- 133  Q
    |||||||||||||||||| ||||||| ||||  |||||||   | ||||||     ||||||||| |||||| ||||||| ||||||||||| ||         
T  32471143 gatagaagaagactaagttcaaagacataagttattactcgcaaggagagtaccaaagggagagaggagagacttcatcaattttcttcataacccggcc 32471242  T
Q  134 -ttattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatcatgagccacatgttcatttatctcaaccaatgatgttatgcc 232  Q
     | | ||||||||| |||||||||||||||||||| || ||||||||||||||||||||  | | |||||| |||||  |||||||||| || |||||||    
T  32471243 ctcagtgatcatcatttctctatttatgcacaatccaagcttccttgattttaggatcactaactacatgtccatttgcctcaaccaataatattatgcc 32471342  T
Q  233 aa 234  Q
    ||    
T  32471343 aa 32471344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 185
Target Start/End: Complemental strand, 42863821 - 42863670
Alignment:
Q  38 aaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagtg----agggagagatgagagagttcatcagttttcttcataccca 133  Q
    |||||||||||||||||  ||||| |||||||||| ||||||||| | |  |||||    | ||||||| |||||| ||  ||| |||||||||||||      
T  42863821 aaaagatagaagaagacctagtcctaagacttaagtcattactctaccaatgagtgtcaaaaggagagaagagagacttggtcatttttcttcatacctc 42863722  T
Q  134 ttattgatcatcaattctctatttatgcacaatcaaaacttccttgatttta 185  Q
    ||| ||| ||||| | |||||||||||||||||| || ||||||| ||||||    
T  42863721 ttagtgaccatcattcctctatttatgcacaatctaagcttccttaatttta 42863670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 29346783 - 29346838
Alignment:
Q  37 gaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagt 92  Q
    ||||||||||||||||||| |||||||||||||||| |||||| ||  ||||||||    
T  29346783 gaaaagatagaagaagacttagtccaaagacttaagtcattaccctcaaagagagt 29346838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 252
Target Start/End: Original strand, 35199381 - 35199515
Alignment:
Q  120 tttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatcatgagccacatgtt--catttatctcaac 217  Q
    |||||||||| | |||||||||||| | |||| ||||||||||||| | ||| ||||||  ||||| |||||  |||||||||||   ||||  |||||     
T  35199381 tttcttcatatcaattattgatcataatttctttatttatgcacaacccaaatttccttagttttaagatcactagccacatgttaaaatttgcctcaaa 35199480  T
Q  218 caatgatgttatgccaaatgtaattttttatatgc 252  Q
    ||||  ||||||||||||| || ||| ||||||||    
T  35199481 caattttgttatgccaaatatattttcttatatgc 35199515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 94 - 209
Target Start/End: Complemental strand, 531268 - 531151
Alignment:
Q  94 agggagagatgagagagttcatcagttttcttcatacccattattgatcatcaatt--ctctatttatgcacaatcaaaacttccttgattttaggatca 191  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||| |||||||| ||  |||| | |||||||| || || |||||||||||||||||||     
T  531268 agggagagaggagagacttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttgattttaggatcg 531169  T
Q  192 tgagccacatgttcattt 209  Q
    | |||| ||||| |||||    
T  531168 ttagccgcatgtccattt 531151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 94 - 209
Target Start/End: Complemental strand, 564223 - 564106
Alignment:
Q  94 agggagagatgagagagttcatcagttttcttcatacccattattgatcatcaatt--ctctatttatgcacaatcaaaacttccttgattttaggatca 191  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||| |||||||| ||  |||| | |||||||| || || |||||||||||||||||||     
T  564223 agggagagaggagagacttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttgattttaggatcg 564124  T
Q  192 tgagccacatgttcattt 209  Q
    | |||| ||||| |||||    
T  564123 ttagccgcatgtccattt 564106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 564281 - 564224
Alignment:
Q  7 tttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaa 64  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||| |||||||||    
T  564281 tttggtgttcttagtgcataaaagagaaaggaaaagatagaagaagaccaagtccaaa 564224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 531326 - 531269
Alignment:
Q  7 tttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaa 64  Q
    |||||||| |||| || |||||||||| |||||||||||||||||||| |||||||||    
T  531326 tttggtgtccttagtagataaaagagaaaggaaaagatagaagaagaccaagtccaaa 531269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 191
Target Start/End: Complemental strand, 46506057 - 46505965
Alignment:
Q  98 agagatgagagagttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatca 191  Q
    ||||| |||||| ||||||| | ||||||| ||||| |||||||| ||  ||| |||||||||||| ||| ||  |||||| ||||||||||||    
T  46506057 agagaggagagacttcatcaatattcttcacacccactattgatcctcctttcactatttatgcac-atccaaggttcctttattttaggatca 46505965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 152 - 268
Target Start/End: Complemental strand, 5700039 - 5699923
Alignment:
Q  152 ctatttatgcacaatcaaaacttccttgattttaggatcatgagccacatgttcatttatctcaaccaatgatgttatgccaaatgtaattttttatatg 251  Q
    |||||||||||||  | |||||||||||||||||||||||  || ||| |||||||||| || ||||||| |||||||||||| |||| ||  | |||||    
T  5700039 ctatttatgcacagcccaaacttccttgattttaggatcactagtcacgtgttcatttaccttaaccaattatgttatgccaagtgtatttcctaatatg 5699940  T
Q  252 ccaatttgaatcataac 268  Q
    | | |||||||||||||    
T  5699939 ctattttgaatcataac 5699923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 269
Target Start/End: Complemental strand, 31380650 - 31380499
Alignment:
Q  119 ttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatcatgagccacatgttcatttatctcaa-- 216  Q
    ||||||||||||| | |||||||| ||| ||| ||||||||||||||   ||  ||| ||||||||||||| || |||||| ||| ||||||| ||||      
T  31380650 ttttcttcatacc-actattgatcctcatttcactatttatgcacaactcaaggttcattgattttaggatgattagccacgtgtccatttatatcaacc 31380552  T
Q  217 ccaatgatgttatgccaaatgtaattttttatatgccaatttgaatcataaca 269  Q
    ||||| ||||||||| || |||| ||    |||||| | ||||||||||||||    
T  31380551 ccaattatgttatgctaagtgtatttccacatatgctactttgaatcataaca 31380499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 13266876 - 13266812
Alignment:
Q  150 ctctatttatgcacaatcaaaacttccttgattttaggatcatgagccacatgttcatttatctc 214  Q
    |||||||||||||||||| || ||||||| ||||||  || |  |||||||||| ||||||||||    
T  13266876 ctctatttatgcacaatccaagcttccttaattttaaaattactagccacatgtccatttatctc 13266812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 111 - 272
Target Start/End: Complemental strand, 45610699 - 45610537
Alignment:
Q  111 ttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatcatgagccacatgttcattta 210  Q
    ||||||| | ||||||||| ||||||||||| |||  | | |||||||||||||| |||| |||||||||| |||| ||||  ||  ||||||  ||||     
T  45610699 ttcatcaatattcttcataaccattattgataatctttcccctatttatgcacaaccaaaccttccttgatcttagaatcactagttacatgtctatttg 45610600  T
Q  211 tctcaaccaatgatgttatgccaaatgtaattttttatatg-ccaatttgaatcataacaaaa 272  Q
     |||||| ||| || ||||||||| |||||||  || |||| |||||||||||||||||||||    
T  45610599 cctcaacaaattatattatgccaagtgtaattacttctatgtccaatttgaatcataacaaaa 45610537  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 239
Target Start/End: Complemental strand, 4848930 - 4848726
Alignment:
Q  38 aaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagtg--agggagagatgagagagttcatcagttttcttcatacccatt 135  Q
    |||| ||||| |||||||||||| ||||||||||| ||||||| | |||||||||   |  ||||||  ||||| |||| || |||||||  | || |||    
T  4848930 aaaatatagaggaagactaagtctaaagacttaagtcattactgtacaagagagtactaaagagagaaaagagatttcaacaattttctttgttcctatt 4848831  T
Q  136 attgatcatcaattctctatttatgcacaatcaaaacttccttgattttagga-tcatgagccacatgttcatttatctcaaccaatgatgttatgccaa 234  Q
    |||||||| || |||| || ||||||| |||| || |||||||||||||   | |||  |||||||||| |||||   ||||||||| ||||||||||||    
T  4848830 attgatcaccatttctatacttatgcataatccaagcttccttgatttttttaatcactagccacatgtccatttgcgtcaaccaattatgttatgccaa 4848731  T
Q  235 atgta 239  Q
    |||||    
T  4848730 atgta 4848726  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 49272703 - 49272661
Alignment:
Q  40 aagatagaagaagactaagtccaaagacttaagccattactct 82  Q
    |||||||||||||||| |||||||| ||||||| |||||||||    
T  49272703 aagatagaagaagacttagtccaaaaacttaagtcattactct 49272661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 155 - 271
Target Start/End: Complemental strand, 6919437 - 6919321
Alignment:
Q  155 tttatgcacaatcaaaacttccttgattttaggatcatgagccacatgttcatttatctcaaccaatgatgttatgccaaatgtaattttttatatgcca 254  Q
    ||||||||||||| |||||| ||| ||||||| ||||  |||||||||| |||||  |||||||||| |||||||||||| |||| |||   |||||| |    
T  6919437 tttatgcacaatccaaactttcttaattttagtatcactagccacatgtccatttgcctcaaccaattatgttatgccaagtgtattttcccatatgcta 6919338  T
Q  255 atttgaatcataacaaa 271  Q
      |||||||||||||||    
T  6919337 tattgaatcataacaaa 6919321  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 262
Target Start/End: Complemental strand, 29181751 - 29181491
Alignment:
Q  8 ttggtgttcttaatacataaaaga---gataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagtg----agggaga 100  Q
    |||||||||||| |||||||||||   || | | ||||||| ||||| ||||||||| |||||| ||| ||||||||| | | |||||     |||||||    
T  29181751 ttggtgttcttagtacataaaagaagagaaaaggaaagatacaagaaaactaagtcccaagact-aagtcattactctactaaagagtactaaagggaga 29181653  T
Q  101 gatgagagagttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatcatgagccaca 200  Q
    || |||||| | || || | |||||||  || |||||||||||| | ||  ||||||||||| |  | ||||||| |||||||||||||||  ||||||     
T  29181652 gaggagagactccagcaatattcttcacccctattattgatcattattttcctatttatgcatatcccaaacttctttgattttaggatcactagccact 29181553  T
Q  201 tgttcatttatctcaaccaatgatgttatgccaaatgtaattttttatatgccaatttgaat 262  Q
    |||||||||  |||||||| | |||  ||||||| |||| || || |||||| | |||||||    
T  29181552 tgttcatttgcctcaaccagtaatgacatgccaagtgtatttcttcatatgctattttgaat 29181491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 15091898 - 15091948
Alignment:
Q  94 agggagagatgagagagttcatcagttttcttcatacccattattgatcat 144  Q
    ||||||||||||| || ||||||| ||||||||||| ||| ||||||||||    
T  15091898 agggagagatgagtgacttcatcaattttcttcatatccactattgatcat 15091948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 29274690 - 29274555
Alignment:
Q  21 tacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagt-------gagggagagatgagagagttc 113  Q
    ||||||||||| | || ||||||||||||||| |||||||||| ||||||| |||||||||| | |||||||       |||||||||  |||||| |||    
T  29274690 tacataaaagataaagaaaaagatagaagaaggctaagtccaaggacttaaaccattactctactagagagtatcaaaggagggagag--gagagacttc 29274593  T
Q  114 atcagttttcttcatacccattattgatcatcaattct 151  Q
    |||| | || |||||||| |||||||||||||| ||||    
T  29274592 atcattatttttcataccaattattgatcatcatttct 29274555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 49138208 - 49138095
Alignment:
Q  119 ttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatcatgagccacatgttcatttatctcaacc 218  Q
    ||||||||||||||||||||||| |||| ||  ||||||||| |||||| || ||||||| |||||||||| |  ||| ||||||  ||||  ||| |||    
T  49138208 ttttcttcatacccattattgat-atcattttcctatttatgtacaatccaagcttcctttattttaggatgaatagctacatgtcaatttgcctcgacc 49138110  T
Q  219 aatgatgttatgcca 233  Q
    ||| |||||||||||    
T  49138109 aattatgttatgcca 49138095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 4625396 - 4625300
Alignment:
Q  133 attattgatcatcaattctctatttatgcacaat-caaaacttccttgattttaggatcatgagccacatgttcatttatctcaaccaatgatgttatg 230  Q
    |||||||||||||||| | |||||||||| |||| ||||||  ||||||| ||| ||| ||||| || |||| |||||| |||||||||| ||||||||    
T  4625396 attattgatcatcaatcccctatttatgcgcaatccaaaac--ccttgatcttaagattatgagtcaaatgtccatttacctcaaccaattatgttatg 4625300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 12900920 - 12900877
Alignment:
Q  39 aaagatagaagaagactaagtccaaagacttaagccattactct 82  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||||    
T  12900920 aaagatagaagaagacttagttcaaagacctaagccattactct 12900877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 267
Target Start/End: Complemental strand, 13400039 - 13399978
Alignment:
Q  206 atttatctcaaccaatgatgttatgccaaatgtaattttttatatgccaatttgaatcataa 267  Q
    ||||||||||| |||| ||||||| ||||||||| ||| ||| |||| | ||||||||||||    
T  13400039 atttatctcaaacaattatgttataccaaatgtactttcttaaatgctattttgaatcataa 13399978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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