View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850_low_35 (Length: 393)
Name: NF7850_low_35
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 46294891 - 46294503
Alignment:
| Q |
1 |
ctctttgttatgcatttagaataaaaatagctaatctaaatttgatataaaaatcaataaatcattcaacaagttgctttatgccaagtaaaagtcacaa |
100 |
Q |
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| T |
46294891 |
ctctttgttatgcatttagaataaaaatagctaatctaaatttgatataaaaatcaataaatcattcaacaagttgctttatgccaagtaaaagtcacaa |
46294792 |
T |
|
| Q |
101 |
gcaaaaatgctactaatgggggccaaaaatatggaatagcactcacttggcaatcacctgcaccaacacgagcaaaaatgcaatcacgaacagatatgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46294791 |
gcaaaaatgctactaatgggggccaaaaatatggaatagcactcacttggcaatcacctgcaccaacacgagcaaaaatgcaatcacgaacagatatgct |
46294692 |
T |
|
| Q |
201 |
cgctttgtcacatggaacaaagcaaccaacttgagccatcaaaatattcactcccacctacacaaaaaccattatgcaaatcaaatctctaagcccaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46294691 |
cgctttgtcacatggaacaaagcaaccaacttgagccatcaaaatattcactcccacctacacaaaaaccattatgcaaatcaaatctctaagcccaaat |
46294592 |
T |
|
| Q |
301 |
agcaaggatgcaagtatctgaattgtatgtgtgaactaaaatatctatacaaagaaaggtgagacactccaatttgatgtccatctcat |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
46294591 |
agcaaggatgcaagtatctgaattgtatgtgtgaactaaaatatctatacaaagaaaggtgagacactccaatttgatggccatgtcat |
46294503 |
T |
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