View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850_low_38 (Length: 368)
Name: NF7850_low_38
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 349
Target Start/End: Complemental strand, 34593570 - 34593238
Alignment:
| Q |
17 |
aataaccaactcggaagttattgcagtaaaccaaggtatagataaaacagaattcatgaattactagaaagacaaaagcattgctttcttctatatgtca |
116 |
Q |
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| T |
34593570 |
aataactaactcggaagttattgcagtaaaccaaggtatagataaaacagaattcatgaattactagaaagacaaaagcattgctttcttctatatgtca |
34593471 |
T |
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| Q |
117 |
atacgatataacactcaaaaaatctaattttccttctgttattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggta |
216 |
Q |
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| T |
34593470 |
atacgatataacactcaaaaaatcaaattttccttctgttattgcagacaaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggta |
34593371 |
T |
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| Q |
217 |
attttcttgttttttgatcccatgatttcatacactatcc-nnnnnnnnaataaaatttttgaggtaggcgttagaggatggaagttctccgaggtgcca |
315 |
Q |
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| T |
34593370 |
actttcttgt-ttttgatcccttgatttcatacactatcctttttttttaataaaatttttgaggtaggcggtagaggatggaagttctccgaggtgcca |
34593272 |
T |
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| Q |
316 |
gcaaccagttgagatgtcggtgattcctcttgat |
349 |
Q |
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| T |
34593271 |
gcaaccagttgagatgtcggtgtttcctcttgat |
34593238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 34577665 - 34577609
Alignment:
| Q |
159 |
tgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt |
215 |
Q |
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| T |
34577665 |
tgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt |
34577609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 32589905 - 32589846
Alignment:
| Q |
156 |
tattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt |
215 |
Q |
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| T |
32589905 |
tattgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt |
32589846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 32600353 - 32600294
Alignment:
| Q |
156 |
tattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt |
215 |
Q |
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| T |
32600353 |
tattgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt |
32600294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 24884037 - 24884099
Alignment:
| Q |
158 |
ttgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggtaattt |
220 |
Q |
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| T |
24884037 |
ttgcagacaaattaggaattcaagggaagaaggtgaaaagtaatgatgatttggaggtgattt |
24884099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 32590017 - 32589981
Alignment:
| Q |
18 |
ataaccaactcggaagttattgcagtaaaccaaggta |
54 |
Q |
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| T |
32590017 |
ataagcaactctgaagttattgcagtaaaccaaggta |
32589981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 32600465 - 32600429
Alignment:
| Q |
18 |
ataaccaactcggaagttattgcagtaaaccaaggta |
54 |
Q |
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|||| |||||| ||||||||||||||||||||||||| |
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| T |
32600465 |
ataagcaactctgaagttattgcagtaaaccaaggta |
32600429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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