View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850_low_40 (Length: 359)
Name: NF7850_low_40
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 348
Target Start/End: Complemental strand, 43803078 - 43802746
Alignment:
| Q |
16 |
atatatacatgaattgtgatctatgcttgcttattgtagtcacctacatggaatagctaacacatgacaaactccaactaactaacataactgccaagta |
115 |
Q |
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| T |
43803078 |
atatatacatgaattgtgatctatgtttgcttattgtagtcacctacatggaatagctaacacataacaaactccaactaactaacataactgccaagta |
43802979 |
T |
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| Q |
116 |
gttacatgctacgcaagtaatctatttgacagttgtatacagtaatagcatatgctaatattaatacagacatgagacaagcacctaagtagtactacaa |
215 |
Q |
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| T |
43802978 |
gttacatactacgcaagtaatctatttgacagttgtatactgtaatagcatatgctaatattaatacagacatgagacaagcacctaagtagtactacaa |
43802879 |
T |
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| Q |
216 |
ctttctattagttcagaccttgaactaaaataaacttgattggtcatgttgcttccccatgaaggcgatatgttggcactgcaagcaagtgtttggctct |
315 |
Q |
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| T |
43802878 |
ctttctattagttcagaccttgaactaaaataaacttgattggtcacgttgcttccccatgaaggcgatatgttggcactgcaagcaagtgtttggctct |
43802779 |
T |
|
| Q |
316 |
tggggttgagagaccaaacttttcagtgatgtc |
348 |
Q |
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| T |
43802778 |
tggggttgagagaccaaacttttcagtcatgtc |
43802746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 203 - 348
Target Start/End: Complemental strand, 43813460 - 43813315
Alignment:
| Q |
203 |
agtagtactacaactttctattagttcagaccttgaactaaaataaacttgattggtcatgttgcttccccatgaaggcgatatgttggcactgcaagca |
302 |
Q |
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| T |
43813460 |
agtagtagtacaactttacattagttcaatccttgaactaaagcaaacttaattggtcatgttgcttccccatgaaggcgatatgttggcactgcaagca |
43813361 |
T |
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| Q |
303 |
agtgtttggctcttggggttgagagaccaaacttttcagtgatgtc |
348 |
Q |
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| T |
43813360 |
agtgtttggctcttgggattgagagaccaaacttttcagtcatgtc |
43813315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 38617361 - 38617252
Alignment:
| Q |
53 |
agtcacctacatggaatagctaacacatgacaaactccaactaactaacataactgccaagtagttacatgctacgcaagtaatctatttgacagttgta |
152 |
Q |
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|||||||||||||||||| ||||||||| || |||| ||||||| ||||||||||| |||| |||||| ||||||||| ||||||||||||||||||||| |
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| T |
38617361 |
agtcacctacatggaatacctaacacataaccaacttcaactaattaacataactgtcaagcagttacttgctacgcaggtaatctatttgacagttgta |
38617262 |
T |
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| Q |
153 |
tacagtaata |
162 |
Q |
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||| |||||| |
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| T |
38617261 |
tactgtaata |
38617252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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