View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850_low_44 (Length: 346)
Name: NF7850_low_44
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 53480054 - 53479895
Alignment:
| Q |
1 |
acacaaaataacagcttcgagaaaaatgagacgagctcctgtggataaattgtgaaacttccgcatataaaatttccctaaaattctatcaatcacacgg |
100 |
Q |
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| T |
53480054 |
acacaaaatagaagcttcgagaaaaatgagacgagctcctgtggataaattgtgaaacttccgcatataaaatttccctaaaattctatcaatcacacgg |
53479955 |
T |
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| Q |
101 |
ttaaaaattgacagcctacttggattatctccaattgacaaacacaaatacttaaatggg |
160 |
Q |
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| T |
53479954 |
ttaaaaattgacagcctacttggattatctccaattgacaaacacaaatacttaaatggg |
53479895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 168 - 328
Target Start/End: Complemental strand, 53479775 - 53479615
Alignment:
| Q |
168 |
ctcttttcacatagcagcaacgtgtcatcagcaaactctaataggaaaattctaaacattactaatttgaaaatccttatacacctaaaatttgaggatg |
267 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53479775 |
ctcttttctcatagcagcaacgtgccatcagcaaactctaaaaggaaaattctaaacattactaatttgaaaatccttatacacctaaaatttgaggatg |
53479676 |
T |
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| Q |
268 |
cacgaatcaaagaattaaatctttcaatggctaataaaaacaagatatatagaagacaaat |
328 |
Q |
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| T |
53479675 |
cacgaatcaaagaattaaatctttcaatggctaataaaaacaagatatatagaagacaaat |
53479615 |
T |
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