View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7850_low_5 (Length: 743)
Name: NF7850_low_5
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 686; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 18 - 727
Target Start/End: Complemental strand, 24637566 - 24636857
Alignment:
| Q |
18 |
atttggttgctttttcatttgtcggaggaatcaagctgttatttcttataatggtgatgattgaaaggcatctgaaacataatttatagctccccactaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24637566 |
atttggttgctttttcatttgtcggaggaatcaagctgttatttcttataatggtgatgattgaaaggcatctgaaacataatttatagctccccactaa |
24637467 |
T |
|
| Q |
118 |
cttctgcacgttttcatagatgctgctcgtgtttctgttttaacttacttttggattccttaaaatcttgttgtgcctatatgttttatgtatcccttgt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24637466 |
cttctgcacgttttcatagatgctgctcgtgtttctgttttaaattacttttggattccttaaaatcttgttgtgcctatatgttttatgtatcccttgt |
24637367 |
T |
|
| Q |
218 |
tcattttaatgttatgcaaggttccattgttccttttatactcgattactcatttatttttgcaggaacataaattgtgggaatcctcaaatggttcccg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24637366 |
tcattttaatgttatgcaaggttccattgttccttttatactcgattactcatttatttttgcaggaacataaattgtgggaatcctcaaatggttcccg |
24637267 |
T |
|
| Q |
318 |
tactcatttgcaaatcttatagtagcagtaactcggatccatgttgttattttacgcaattgaaccaattgagtgattcattttttggggtcccttttat |
417 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24637266 |
tactcgtttgcaaatcttatagtagcagtaactcggatccatgttgttattttacgcaattgaaccaattgagtgattcattttttggggtcccttttat |
24637167 |
T |
|
| Q |
418 |
ctgtttctcggtttaataattcacaaattggattcctaagctttgtaagaaaaataaacatgattttttaatttctaaataaaattagttttttggtcat |
517 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24637166 |
ctgtttctcagtttaatgattcacaaattggattcctaagctttgtaagaaaaataaacatgattttttaatttctaaataaaattagttttttggtcat |
24637067 |
T |
|
| Q |
518 |
gtttaaattatatggattccccgaaaaagaagtgatctgtgattctctttatgcaggcattatacagtgcctctcaacactggctattcccccaagattt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24637066 |
gtttaaattatatggattccccgaaaaagaagtgatctgtgattctctttatgcaggcattatacagtgcctctcaacactggctattcccccaagattt |
24636967 |
T |
|
| Q |
618 |
atgaggttgacattgactcaggttgtgaccacacttgggttcagtgtgatgcaccatgtataggttttatcaaggtgaagtcaaacttagatcaggcatc |
717 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24636966 |
atgaggttgacattgactcagtttgtgaccacacttgggttcagtgtgatgcaccatgtaaaggttttatcaaggtgaagtcaaacttagatcaggcatc |
24636867 |
T |
|
| Q |
718 |
attctgatgt |
727 |
Q |
| |
|
|||||||||| |
|
|
| T |
24636866 |
attctgatgt |
24636857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 459 - 727
Target Start/End: Complemental strand, 24715669 - 24715391
Alignment:
| Q |
459 |
tttgtaagaaaaataaacatgattttttaatttctaaataaaattagttttt-tggtcatgtttaaattatatggattccccgaaaaagaa----gtgat |
553 |
Q |
| |
|
||||| ||||||| ||||||||||||| |||||| |||| |||||||||||| | |||| ||||||||||||||||||||| ||| || || ||||| |
|
|
| T |
24715669 |
tttgtgagaaaaagaaacatgatttttcaatttcgaaatgaaattagtttttattgtcaagtttaaattatatggattccctgaagaaaaataaagtgat |
24715570 |
T |
|
| Q |
554 |
ctgtgattctctttatgcaggcattatacagtgc---ctctcaacactggctattcccccaagatttatgaggttgacattgactcaggttgtgaccaca |
650 |
Q |
| |
|
||| ||||||||||||||||||| ||||||| || |||||| ||||||| || | ||| ||||||| |||||||||||||||||||||||| || |
|
|
| T |
24715569 |
acgtggttctctttatgcaggcattgtacagtgtgatctatcaacattggctatgcctctaagctttatgacgttgacattgactcaggttgtgacagca |
24715470 |
T |
|
| Q |
651 |
cttgggttcagtgtgatg--caccatgtataggttttatcaaggtgaagtcaaacttagatcaggcatcattctgatgt |
727 |
Q |
| |
|
|||||||||||||||||| |||| |||| ||||| ||||||| ||||||||||||||| | || ||||||||||||| |
|
|
| T |
24715469 |
cttgggttcagtgtgatgcacaccttgtaaaggttgcatcaaggcgaagtcaaacttagacctggtatcattctgatgt |
24715391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 149 - 356
Target Start/End: Complemental strand, 24716010 - 24715794
Alignment:
| Q |
149 |
tttctgttttaacttacttttggattccttaaaatcttgttgtgcctatatgttttatgtatcccttgttcattttaatgttatgcaaggttccattgtt |
248 |
Q |
| |
|
|||||||||||| ||| |||||| |||||||||| ||| |||||||| |||||||||||||||||| |||||||||||||||||| ||||||||| || |
|
|
| T |
24716010 |
tttctgttttaaattagttttgggttccttaaaaaattgcggtgcctatttgttttatgtatcccttgctcattttaatgttatgcatggttccattatt |
24715911 |
T |
|
| Q |
249 |
ccttttatactcgattactcatttatttttgcaggaacataaattgtgggaa-------------tcctcaaatggttcccgtactca-tttgcaaatct |
334 |
Q |
| |
|
||||||||||| ||| ||| |||||| || ||| ||| ||||||||| ||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
24715910 |
gcttttatactcaatt-----tttttttttgtagtaacttaacttgtgggaagcctcaaattttgtcctcaaatggttcctgtactcagtttgcaaatct |
24715816 |
T |
|
| Q |
335 |
tatagtagcagtaactcggatc |
356 |
Q |
| |
|
||||||||| ||| |||||||| |
|
|
| T |
24715815 |
tatagtagcggtagctcggatc |
24715794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 24716194 - 24716115
Alignment:
| Q |
18 |
atttggttgctttttcatttgtcggaggaatcaagctgttatttcttataatggtgatgattgaaaggcatctgaaacataattt |
102 |
Q |
| |
|
|||||||||||||||||| | | ||||||||||| |||||||||| ||||| |||||||||||| |||||||||||||||| |
|
|
| T |
24716194 |
atttggttgctttttcatatataggaggaatcaatctgttatttcctataa-----atgattgaaaggaatctgaaacataattt |
24716115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 24632314 - 24632253
Alignment:
| Q |
199 |
tgttttatgtatcccttgttcattttaatgttatgcaaggttccattgttccttttatactc |
260 |
Q |
| |
|
|||||||||||| | |||||||||| ||||||||| ||||||| |||||| ||||||||| |
|
|
| T |
24632314 |
tgttttatgtatgcattgttcatttcaatgttatgtaaggttctgctgttccgtttatactc |
24632253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 565 - 683
Target Start/End: Complemental strand, 10330825 - 10330707
Alignment:
| Q |
565 |
tttatgcaggcattatacagtgcctctcaacactggctattcccccaagatttatgaggttgacattgactcaggttgtgaccacacttgggttcagtgt |
664 |
Q |
| |
|
|||||| ||| ||||||| || ||||||||| ||||||| | || ||| ||||||| |||| || ||||||||| |||||| |||||||||||||||| |
|
|
| T |
10330825 |
tttatgtaggtattatactgtctctctcaacattggctatcctccaaagctttatgaccttgatatcgactcaggtagtgacctcacttgggttcagtgt |
10330726 |
T |
|
| Q |
665 |
gatgcaccatgtataggtt |
683 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
10330725 |
gatgcaccatgtaaaggtt |
10330707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University