View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850_low_6 (Length: 734)

Name: NF7850_low_6
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850_low_6
NF7850_low_6
[»] chr3 (38 HSPs)
chr3 (1-719)||(26452029-26452745)
chr3 (3-132)||(36755942-36756071)
chr3 (1-132)||(44813346-44813470)
chr3 (8-132)||(29780953-29781077)
chr3 (12-132)||(54099248-54099368)
chr3 (1-130)||(45186445-45186574)
chr3 (1-132)||(33796315-33796446)
chr3 (8-130)||(52485528-52485650)
chr3 (1-94)||(52714782-52714875)
chr3 (9-132)||(1436873-1436996)
chr3 (8-130)||(52100316-52100438)
chr3 (1-94)||(48353045-48353138)
chr3 (1-130)||(48944604-48944733)
chr3 (1-53)||(6178396-6178448)
chr3 (1-83)||(5114126-5114208)
chr3 (1-130)||(16479680-16479810)
chr3 (1-83)||(35377022-35377104)
chr3 (1-130)||(37894135-37894265)
chr3 (8-94)||(49021767-49021853)
chr3 (18-132)||(51698924-51699038)
chr3 (1-130)||(49761080-49761209)
chr3 (1-82)||(55322658-55322739)
chr3 (9-82)||(55361175-55361248)
chr3 (1-49)||(288774-288822)
chr3 (1-49)||(5244277-5244325)
chr3 (1-53)||(14207228-14207280)
chr3 (1-53)||(14214976-14215028)
chr3 (1-53)||(20547961-20548013)
chr3 (1-49)||(27541477-27541525)
chr3 (1-49)||(38926676-38926724)
chr3 (1-53)||(39629809-39629861)
chr3 (1-49)||(41505539-41505587)
chr3 (1-53)||(42358609-42358661)
chr3 (1-53)||(44463405-44463457)
chr3 (1-53)||(50314673-50314725)
chr3 (3-49)||(28700511-28700557)
chr3 (1-83)||(45711380-45711462)
chr3 (1-94)||(19150249-19150341)
[»] chr7 (23 HSPs)
chr7 (3-134)||(34507095-34507226)
chr7 (1-132)||(42584851-42584982)
chr7 (9-132)||(41430043-41430166)
chr7 (1-132)||(36352475-36352607)
chr7 (1-94)||(40854584-40854677)
chr7 (1-132)||(35822866-35822997)
chr7 (1-132)||(34108748-34108877)
chr7 (8-53)||(31445373-31445418)
chr7 (1-53)||(4292476-4292528)
chr7 (1-40)||(22541009-22541048)
chr7 (9-83)||(30064497-30064569)
chr7 (1-127)||(44496699-44496825)
chr7 (8-94)||(48145580-48145666)
chr7 (8-53)||(10700156-10700201)
chr7 (1-53)||(18111582-18111634)
chr7 (1-49)||(41989717-41989765)
chr7 (1-49)||(43942685-43942733)
chr7 (3-49)||(24532917-24532963)
chr7 (1-130)||(31398172-31398302)
chr7 (3-61)||(36703834-36703892)
chr7 (3-49)||(38956593-38956639)
chr7 (8-53)||(35098674-35098719)
chr7 (8-49)||(41018719-41018760)
[»] chr2 (28 HSPs)
chr2 (3-130)||(14328432-14328559)
chr2 (14-132)||(12070909-12071027)
chr2 (1-132)||(19843533-19843664)
chr2 (1-132)||(7084606-7084737)
chr2 (1-130)||(40700244-40700373)
chr2 (13-128)||(4657362-4657477)
chr2 (8-130)||(1040569-1040691)
chr2 (1-132)||(21738509-21738638)
chr2 (1-130)||(29449260-29449388)
chr2 (1-82)||(44050064-44050144)
chr2 (1-53)||(36774587-36774639)
chr2 (8-132)||(42532630-42532754)
chr2 (9-132)||(26290742-26290865)
chr2 (70-129)||(39309527-39309586)
chr2 (1-53)||(7258532-7258584)
chr2 (1-49)||(9207638-9207686)
chr2 (1-49)||(10472122-10472170)
chr2 (1-49)||(18254184-18254232)
chr2 (1-53)||(34945061-34945113)
chr2 (1-48)||(9760066-9760113)
chr2 (3-82)||(42430700-42430779)
chr2 (1-83)||(27490671-27490753)
chr2 (3-49)||(41042304-41042350)
chr2 (1-55)||(42372528-42372582)
chr2 (10-83)||(2076626-2076699)
chr2 (8-53)||(2841890-2841934)
chr2 (1-94)||(18737803-18737896)
chr2 (8-53)||(36644050-36644095)
[»] chr1 (28 HSPs)
chr1 (1-132)||(52437543-52437674)
chr1 (1-134)||(29877346-29877479)
chr1 (16-132)||(30519516-30519632)
chr1 (1-132)||(34817936-34818067)
chr1 (1-108)||(49570045-49570152)
chr1 (18-132)||(29359809-29359923)
chr1 (1-130)||(12999716-12999845)
chr1 (5-94)||(23665655-23665744)
chr1 (8-132)||(30745042-30745166)
chr1 (8-132)||(30766493-30766617)
chr1 (8-130)||(30973608-30973730)
chr1 (8-130)||(33076175-33076297)
chr1 (1-83)||(50775097-50775179)
chr1 (8-53)||(9988007-9988052)
chr1 (1-132)||(49446685-49446820)
chr1 (8-93)||(17652684-17652769)
chr1 (1-49)||(649817-649865)
chr1 (1-53)||(33100856-33100908)
chr1 (1-40)||(740939-740978)
chr1 (8-83)||(49065305-49065380)
chr1 (3-49)||(31088231-31088277)
chr1 (8-94)||(48261195-48261281)
chr1 (3-61)||(49660230-49660288)
chr1 (1-94)||(11947844-11947937)
chr1 (1-82)||(29706645-29706725)
chr1 (1-38)||(30536040-30536077)
chr1 (8-61)||(33070658-33070711)
chr1 (8-53)||(35369755-35369800)
[»] chr8 (25 HSPs)
chr8 (8-134)||(45405587-45405713)
chr8 (1-132)||(35067209-35067340)
chr8 (1-132)||(6440130-6440261)
chr8 (3-132)||(41639689-41639820)
chr8 (1-132)||(3413084-3413215)
chr8 (46-132)||(39453208-39453294)
chr8 (1-130)||(25830139-25830268)
chr8 (1-83)||(10902753-10902835)
chr8 (9-132)||(42786549-42786674)
chr8 (1-130)||(67054-67183)
chr8 (1-130)||(43715923-43716052)
chr8 (8-130)||(33539461-33539583)
chr8 (1-49)||(21526255-21526303)
chr8 (1-53)||(24798328-24798380)
chr8 (1-49)||(43285937-43285985)
chr8 (1-53)||(44061766-44061818)
chr8 (17-132)||(5574320-5574435)
chr8 (3-82)||(28756586-28756665)
chr8 (9-51)||(7777152-7777194)
chr8 (9-83)||(10731602-10731676)
chr8 (1-83)||(11253483-11253565)
chr8 (3-49)||(31249499-31249545)
chr8 (3-53)||(44825493-44825543)
chr8 (8-61)||(34873892-34873945)
chr8 (8-53)||(36816587-36816632)
[»] chr4 (37 HSPs)
chr4 (12-132)||(31468880-31469000)
chr4 (1-132)||(15522403-15522534)
chr4 (8-132)||(16019532-16019656)
chr4 (1-111)||(31574852-31574962)
chr4 (17-132)||(34757800-34757915)
chr4 (17-132)||(34759074-34759189)
chr4 (8-130)||(193588-193710)
chr4 (1-130)||(11546794-11546923)
chr4 (1-53)||(19232104-19232156)
chr4 (3-83)||(37997304-37997384)
chr4 (1-132)||(50980639-50980770)
chr4 (1-127)||(44257626-44257752)
chr4 (3-97)||(49372240-49372333)
chr4 (8-53)||(7632432-7632477)
chr4 (1-130)||(36123354-36123482)
chr4 (1-130)||(49585043-49585172)
chr4 (1-53)||(50890044-50890096)
chr4 (8-83)||(50831696-50831771)
chr4 (1-130)||(55609058-55609188)
chr4 (1-62)||(32696751-32696811)
chr4 (10-111)||(46665107-46665208)
chr4 (8-132)||(47015063-47015185)
chr4 (1-53)||(5386421-5386473)
chr4 (1-49)||(10250490-10250538)
chr4 (1-49)||(31559587-31559635)
chr4 (1-49)||(37297097-37297145)
chr4 (1-84)||(38792831-38792912)
chr4 (1-49)||(40348842-40348890)
chr4 (3-130)||(1795875-1796002)
chr4 (1-40)||(51930875-51930914)
chr4 (3-53)||(11068738-11068788)
chr4 (1-82)||(1627500-1627581)
chr4 (1-62)||(5249917-5249978)
chr4 (10-55)||(21025659-21025704)
chr4 (1-62)||(28458339-28458399)
chr4 (1-46)||(42490957-42491002)
chr4 (8-49)||(50721719-50721760)
[»] chr5 (25 HSPs)
chr5 (9-132)||(6758681-6758805)
chr5 (8-132)||(16690555-16690679)
chr5 (3-132)||(884492-884621)
chr5 (1-128)||(14321850-14321977)
chr5 (1-130)||(22098304-22098433)
chr5 (8-132)||(9168059-9168180)
chr5 (1-132)||(38493673-38493805)
chr5 (13-84)||(41699514-41699585)
chr5 (8-94)||(4088499-4088585)
chr5 (3-53)||(5168233-5168283)
chr5 (8-53)||(19521974-19522019)
chr5 (8-49)||(33958234-33958275)
chr5 (1-53)||(33037568-33037620)
chr5 (1-49)||(36738996-36739044)
chr5 (1-49)||(39591728-39591776)
chr5 (1-49)||(39592120-39592168)
chr5 (1-53)||(40364617-40364669)
chr5 (8-83)||(7287130-7287205)
chr5 (3-82)||(19952050-19952129)
chr5 (3-53)||(4719701-4719751)
chr5 (1-83)||(35567549-35567631)
chr5 (11-53)||(39054645-39054687)
chr5 (1-62)||(20770180-20770240)
chr5 (1-82)||(21943637-21943718)
chr5 (8-53)||(38293329-38293374)
[»] chr6 (18 HSPs)
chr6 (1-130)||(27612923-27613052)
chr6 (1-94)||(28630147-28630240)
chr6 (1-83)||(22079504-22079586)
chr6 (3-83)||(26595399-26595479)
chr6 (9-130)||(1376421-1376544)
chr6 (9-130)||(1384169-1384292)
chr6 (10-82)||(8056773-8056845)
chr6 (1-53)||(8645357-8645409)
chr6 (1-49)||(25811813-25811861)
chr6 (8-128)||(31883199-31883319)
chr6 (1-40)||(13423017-13423056)
chr6 (1-84)||(16337862-16337945)
chr6 (3-61)||(10335601-10335659)
chr6 (1-83)||(16328640-16328722)
chr6 (64-130)||(33651132-33651198)
chr6 (1-38)||(23653879-23653916)
chr6 (8-49)||(24900829-24900870)
chr6 (25-130)||(31869140-31869245)
[»] scaffold0662 (1 HSPs)
scaffold0662 (8-132)||(1202-1324)
[»] scaffold0053 (1 HSPs)
scaffold0053 (9-129)||(12554-12674)


Alignment Details
Target: chr3 (Bit Score: 647; Significance: 0; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 1 - 719
Target Start/End: Complemental strand, 26452745 - 26452029
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  26452745 tctctctcatactcacattatatttttactttctctctctattgctttgatttccctgtcaatacatgattttctttgtaaaaagatgattgtccatata 26452646  T
Q  101 attgtcaatcacattgatattcaaataacatttcgggtcacaaaagcaaatctcaaataatgctctaacatcaagttgaagcaatattttattttatggc 200  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26452645 attgtcaatcacattgatattcaaataacatttcagatcacaaaagcaaatctcaaataatgctctaacatcaagttgaagcaatattttattttatggc 26452546  T
Q  201 ataaagtattannnnnnnnnctgacaaattatagcataagttgaagcaaagattatatataatatgattacatcatttgtctaacttgtaatataatatt 300  Q
    |||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26452545 ataaagtattatttttta--ctgacaaattatagcataagttgaagcaaagattatatataatatgattacatcatttgtctaacttgtaatataatatt 26452448  T
Q  301 acatgagaatgtcgtggggaaataatccgaattatatattattatacacatactcattataacaaccactagaattggtccttttgacattacaactata 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26452447 acatgagaatgtcgtggggaaataatccgaattatatattattatacacatactcattataacaaccactagaattggtccttttgacattaaaactata 26452348  T
Q  401 caaatttatacaagcaccaacaaaatcgatgctctagttacaatacacaactaagcctctaaaaccaaaggtttgaaaaattggcaggttttttacaaga 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26452347 caaatttatacaagcaccaacaaaatcgatgctctagttacaatacacaactaagcctctaaaaccaaaggtttgaaaaattggcaggttttttacaagt 26452248  T
Q  501 acttttcttagatcattttcacaacccaaagcttatattttctaacatacaaatacacaagacaaggtcctataagatttgcttcagacagtgacttaca 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26452247 acttttcttagatcattttcacaacccaaagcttatattttctaacatacaaatacacaagacaaggtcctataagatttgcttcagacagtgacttaca 26452148  T
Q  601 aagcttgatataaagatctaaatttccatattgctgtatccttttccttaaaccttgcataacagcaactctatccaaatactcaggatagaatcccaat 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26452147 aagcttgatataaagatctaaatttccatattgctgtatccttttccttaaaccttgcataacagcaactctatccaaatactcaggatagaatcccaat 26452048  T
Q  701 tcaagcattttcatcacag 719  Q
    |||||||||||||| ||||    
T  26452047 tcaagcattttcattacag 26452029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 36756071 - 36755942
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgat 102  Q
    |||| ||||||| |||||||| |||| ||||||||||| ||||||||||||   || ||||| ||  ||||||||||||||| ||| ||||| || ||||    
T  36756071 tctctcatactcgcattatatttttattttctctctctattgctttgatttttgtgccaacatatacttttctttgtaaaaatatggttgtcaatgtgat 36755972  T
Q  103 tgtcaatcacattgatattcaaataacatt 132  Q
    ||||||||| ||||||||||||||||||||    
T  36755971 tgtcaatcaaattgatattcaaataacatt 36755942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 44813470 - 44813346
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||||||||||||| |||||||| ||||||| |||||||| ||| | |||||| ||||| ||||||||||||||       ||||||  ||    
T  44813470 tctctctcatactcacattatatttttactttatctctctattgctttggttttcgtgtcaatacatggttttctttgtaaaa-------tgtccacgtg 44813378  T
Q  101 attgtcaatcacattgatattcaaataacatt 132  Q
     ||||||||||||||||| |||||||||||||    
T  44813377 gttgtcaatcacattgatgttcaaataacatt 44813346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 29780953 - 29781077
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtca 107  Q
    |||| ||||||||||| |||||||| | ||||| ||| |||||||| | || ||| |||   |||||||| |||||| ||||||||||||||||||||||    
T  29780953 catattcacattatatttttactttttttctctattgttttgattttcgtgccaatacaaacttttctttataaaaatatgattgtccatatgattgtca 29781052  T
Q  108 atcacattgatattcaaataacatt 132  Q
    |||| |||||| | |||||||||||    
T  29781053 atcaaattgatgtccaaataacatt 29781077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 54099368 - 54099248
Alignment:
Q  12 ctcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatca 111  Q
    |||| ||||||| |||||||||||||||| ||||||||||||   || ||||| ||  ||||||||||||||| ||||||||| || | |||||||| ||    
T  54099368 ctcatattatatttttactttctctctctattgctttgatttttatgccaacatatacttttctttgtaaaaatatgattgtcaatgtaattgtcaacca 54099269  T
Q  112 cattgatattcaaataacatt 132  Q
     |||||| |||||||||||||    
T  54099268 aattgatgttcaaataacatt 54099248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 45186574 - 45186445
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| ||| |||||||||||| |||||||||||||||| || ||||||||| | |||||| ||||  ||||| ||||||||  ||| |||||||| ||    
T  45186574 tctctctcatgctcacattatatttttactttctctctctattactttgattttcttgtcaatacatacttttcgttgtaaaagtatggttgtccatttg 45186475  T
Q  101 attgtcaatcacattgatattcaaataaca 130  Q
     ||||||| || |||||| ||| |||||||    
T  45186474 gttgtcaaacaaattgatgttcgaataaca 45186445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 33796315 - 33796446
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||||| ||||||| |||||||| |||| || || |||||||||   || ||||||||  |||||||| |||||| ||| ||||| || ||    
T  33796315 tctctctcatactcatattatatttttactttttctccctattactttgatttttgtgccaacacatacttttctttataaaaatatggttgtcaatgtg 33796414  T
Q  101 attgtcaatcacattgatattcaaataacatt 132  Q
    |||||||| || |||||| |||||||||||||    
T  33796415 attgtcaaccaaattgattttcaaataacatt 33796446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 52485528 - 52485650
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtca 107  Q
    |||||||||||||||| |||||||| ||||||| |||||||| ||| | || ||| ||||  ||||||||||||||| ||| ||||||||  | ||||||    
T  52485528 catactcacattatatttttactttatctctctattgctttggttttcgtgccaatacatacttttctttgtaaaaatatggttgtccattaggttgtca 52485627  T
Q  108 atcacattgatattcaaataaca 130  Q
    | || || ||| |||||||||||    
T  52485628 aacaaatagatgttcaaataaca 52485650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 52714782 - 52714875
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtc 94  Q
    |||||| |||||| ||||||||| |||||||||||||||| ||||||||||||   || ||||||||  ||||||||||||||| ||| |||||    
T  52714782 tctctctcatacttacattatatttttactttctctctctattgctttgatttttgtgccaacacatacttttctttgtaaaaatatggttgtc 52714875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 1436873 - 1436996
Alignment:
Q  9 atactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaa 108  Q
    ||||||||||||||| |||||||||||||||| ||| |||  |||   || ||||||||  ||||||||||||||| ||| ||||| || || |||| ||    
T  1436873 atactcacattatatttttactttctctctctattgttttattttttgtgccaacacatacttttctttgtaaaaatatggttgtcaatgtggttgtaaa 1436972  T
Q  109 tcacattgatattcaaataacatt 132  Q
     || |||||| |||||||||||||    
T  1436973 ccaaattgatgttcaaataacatt 1436996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 52100316 - 52100438
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtca 107  Q
    |||||| ||||||||| |||||||||||| ||| || ||||||| |   ||  || ||||  ||||||||||||||| |||||||||||| | |||||||    
T  52100316 catacttacattatatttttactttctctttctattactttgatatttatgctaatacatatttttctttgtaaaaatatgattgtccatttaattgtca 52100415  T
Q  108 atcacattgatattcaaataaca 130  Q
    | || |||||| |||||||||||    
T  52100416 agcaaattgatgttcaaataaca 52100438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 48353045 - 48353138
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtc 94  Q
    |||||| |||||||| ||||||| |||||||||||||||| ||||||||||||   |  ||||||||  |||||||| |||||| |||||||||    
T  48353045 tctctctcatactcatattatatttttactttctctctctattgctttgatttttgtaccaacacatacttttctttataaaaatatgattgtc 48353138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 48944733 - 48944604
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||||| |||| || |||||||||||||||| || ||||||| |   || ||| ||||  ||||||||||||||| |||||||| ||| |     
T  48944733 tctctctcatactcatattacatttttactttctctctctattactttgatatttgtgccaatacatatttttctttgtaaaaatatgattgttcattta 48944634  T
Q  101 attgtcaatcacattgatattcaaataaca 130  Q
     ||||||| || |||||| |||||||||||    
T  48944633 gttgtcaagcaaattgatgttcaaataaca 48944604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 6178448 - 6178396
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||| |||||||||||||| | |||||||||||||||| ||||||||||||    
T  6178448 tctctctcatactcacattatgtttttactttctctctctattgctttgattt 6178396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 5114126 - 5114208
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaa 83  Q
    |||||| || ||||||||||| | |||||||||||||||| ||||||||||||   |||||  || | |||||||||||||||    
T  5114126 tctctctcacactcacattatctttttactttctctctctattgctttgatttttgtgtcactacctcattttctttgtaaaa 5114208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 16479680 - 16479810
Alignment:
Q  1 tctctcacatactcacattatatcttt-actttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatat 99  Q
    |||||| ||||||||||||| || ||| | ||||||||||| || ||||||||| | || ||| ||||  ||||||||||||||| | | ||||| || |    
T  16479680 tctctctcatactcacattacattttttattttctctctctattactttgattttcgtgccaatacatatttttctttgtaaaaacaaggttgtctattt 16479779  T
Q  100 gattgtcaatcacattgatattcaaataaca 130  Q
    | ||||||| || || ||| |||||||||||    
T  16479780 ggttgtcaagcaaatagatgttcaaataaca 16479810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 35377104 - 35377022
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaa 83  Q
    |||||| || ||||||||||| | |||||||||| ||||| ||||||||||||   || ||| |||| |||||||||||||||    
T  35377104 tctctctcacactcacattatgtttttactttctttctctattgctttgatttttgtgccaatacatcattttctttgtaaaa 35377022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 37894265 - 37894135
Alignment:
Q  1 tctctcacatactcacattatatcttt-actttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatat 99  Q
    |||||| ||||||||||||| || ||| ||||||||||||| || ||||||| |   |||||| ||||  ||||||| |||||||  || |||||||| |    
T  37894265 tctctctcatactcacattacattttttactttctctctctattactttgatatttgtgtcaatacatacttttcttggtaaaaatgtggttgtccattt 37894166  T
Q  100 gattgtcaatcacattgatattcaaataaca 130  Q
      ||||||| || |||||| |||||||||||    
T  37894165 agttgtcaagcaaattgatgttcaaataaca 37894135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 49021767 - 49021853
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtc 94  Q
    |||||||||||||||| |||| ||| ||||||  ||||||||||||   || ||||||||  ||||||||||||||| ||| |||||    
T  49021767 catactcacattatatttttattttgtctctcaattgctttgatttttgtgccaacacatacttttctttgtaaaaatatggttgtc 49021853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 51698924 - 51699038
Alignment:
Q  18 ttatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattga 117  Q
    |||||| |||| ||||||||||| ||| |||| |||   || ||||||||  |||||||||||| || ||| ||||| || || ||||||| || |||||    
T  51698924 ttatatttttattttctctctctattgatttggtttttgtgccaacacatacttttctttgtaagaatatggttgtcaatgtggttgtcaaccaaattga 51699023  T
Q  118 tattcaaataacatt 132  Q
    | |||||||||||||    
T  51699024 tgttcaaataacatt 51699038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 49761209 - 49761080
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| || ||||||||||||| |||||||||||| ||| || ||||||| |   || ||| ||||  |||||||||||||||  || |||||||| |     
T  49761209 tctctctcacactcacattatatttttactttctctttctattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtccattta 49761110  T
Q  101 attgtcaatcacattgatattcaaataaca 130  Q
     ||||||| || |||||| || ||||||||    
T  49761109 gttgtcaagcaaattgatgttgaaataaca 49761080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 55322739 - 55322658
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaa 82  Q
    |||||| |||||||||||||| | |||||||||||||||| ||  |||| ||||| |||| | ||||  |||||||||||||    
T  55322739 tctctcccatactcacattatgtttttactttctctctctatttttttggtttccgtgtcgatacatatttttctttgtaaa 55322658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 55361248 - 55361175
Alignment:
Q  9 atactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaa 82  Q
    ||||||||||||| | |||||||||||||||| |||||||| |||   |||||| || | ||||||||||||||    
T  55361248 atactcacattatttttttactttctctctctattgctttggtttttgtgtcaatacttcattttctttgtaaa 55361175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 288774 - 288822
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||||| |||||||||||||| | |||||||||||||||| ||||||||    
T  288774 tctctctcatactcacattatttttttactttctctctctattgctttg 288822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5244277 - 5244325
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||||| |||||||||||||| | |||||||||||||||| ||||||||    
T  5244277 tctctctcatactcacattatttttttactttctctctctattgctttg 5244325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 14207280 - 14207228
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||| |||||||||||||| |||| | ||||||||||| ||||||||||||    
T  14207280 tctctctcatactcacattatgtcttcattttctctctctattgctttgattt 14207228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 14215028 - 14214976
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||| |||||||||||||| |||| | ||||||||||| ||||||||||||    
T  14215028 tctctctcatactcacattatgtcttcattttctctctctattgctttgattt 14214976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 20548013 - 20547961
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||| ||||||||| |||| | |||||||||||||||| ||||||||||||    
T  20548013 tctctctcatactcacgttatctttttactttctctctctattgctttgattt 20547961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 27541525 - 27541477
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||||| |||||||||||||| | |||||||||||||||| ||||||||    
T  27541525 tctctctcatactcacattatctttttactttctctctctattgctttg 27541477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38926676 - 38926724
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||||| |||||||||||||| | |||||||||||||||| ||||||||    
T  38926676 tctctctcatactcacattatctttttactttctctctctattgctttg 38926724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 39629861 - 39629809
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||| |||||||||||||| | |||||||||||||||| ||| ||||||||    
T  39629861 tctctctcatactcacattatgtttttactttctctctctattgttttgattt 39629809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 41505539 - 41505587
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||||| |||||||||||||| | |||||||||||||||| ||||||||    
T  41505539 tctctctcatactcacattatctttttactttctctctctattgctttg 41505587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 42358661 - 42358609
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||| |||||||||||||| | |||||||| ||||||| ||||||||||||    
T  42358661 tctctctcatactcacattatctttttactttatctctctattgctttgattt 42358609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 44463405 - 44463457
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||| |||||||||||||||| |||| ||||||| |||||| |||||||||    
T  44463405 tctctctcatactcacattatatttttattttctctttctgttactttgattt 44463457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 50314673 - 50314725
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||| |||||||||||||| | |||||||||||||||| || |||||||||    
T  50314673 tctctctcatactcacattatgtttttactttctctctctattactttgattt 50314725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 28700511 - 28700557
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||| |||||||||||||| | |||||||||||||||| ||||||||    
T  28700511 tctctcatactcacattatgtttttactttctctctctattgctttg 28700557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 45711462 - 45711380
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaa 83  Q
    |||||| |||||||||||||| | |||||||||||||||| ||| |||| ||    |||||| || | |||||||||||||||    
T  45711462 tctctctcatactcacattatctttttactttctctctctattgttttggttattgtgtcaatacttcattttctttgtaaaa 45711380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 19150341 - 19150249
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtc 94  Q
    |||||| |||| | ||||||||| |||||||||||||||| ||| ||||||||   |||||||| ||  |||||||| |||||| ||| |||||    
T  19150341 tctctctcatatttacattatat-tttactttctctctctattgttttgatttttgtgtcaacaaatacttttctttataaaaatatggttgtc 19150249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 4e-37; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 34507226 - 34507095
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgat 102  Q
    |||| |||||||||||||||| |||||||||||||||| |||||||||||| | |||||| |||||||||| ||| |||||||||  |||||||| || |    
T  34507226 tctcccatactcacattatatttttactttctctctctattgctttgattttcgtgtcaatacatgattttttttataaaaagatagttgtccatgtggt 34507127  T
Q  103 tgtcaatcacattgatattcaaataacatttc 134  Q
    |||||||||||||||| |||||||||||||||    
T  34507126 tgtcaatcacattgatgttcaaataacatttc 34507095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 42584851 - 42584982
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||||||||||||| |||||||| ||||||| |||||||||||  | |||||| | ||||||||||||||||||||||| |||||||| ||    
T  42584851 tctctctcatactcacattatatttttactttatctctctattgctttgattctcgtgtcaatagatgattttctttgtaaaaagatggttgtccatgtg 42584950  T
Q  101 attgtcaatcacattgatattcaaataacatt 132  Q
     ||||||||||||||||| |||||||||||||    
T  42584951 gttgtcaatcacattgatgttcaaataacatt 42584982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 41430166 - 41430043
Alignment:
Q  9 atactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaa 108  Q
    ||||||||||||||| |||||||| ||||||| |||||||| ||| | |||||| | ||||||||||||||||||||||| |||||||| || |||||||    
T  41430166 atactcacattatatttttactttatctctctattgctttggttttcgtgtcaatatatgattttctttgtaaaaagatggttgtccatgtggttgtcaa 41430067  T
Q  109 tcacattgatattcaaataacatt 132  Q
    |||||||||| |||||||||||||    
T  41430066 tcacattgatgttcaaataacatt 41430043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 36352607 - 36352475
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatat- 99  Q
    |||||| |||||| ||||||||| |||||||| ||||||| |||||||||||| | |||||| | ||||||||||||||||||||||| |||||||| |     
T  36352607 tctctctcatacttacattatatttttactttatctctctattgctttgattttcgtgtcaatatatgattttctttgtaaaaagatggttgtccatgta 36352508  T
Q  100 gattgtcaatcacattgatattcaaataacatt 132  Q
    | ||||||||||||||||| |||||||||||||    
T  36352507 gtttgtcaatcacattgatgttcaaataacatt 36352475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 40854677 - 40854584
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtc 94  Q
    |||||| |||||||||||||||| |||||||||||||||| ||||||||||||   || ||||||||  ||||||||||||||| ||| |||||    
T  40854677 tctctctcatactcacattatatttttactttctctctctattgctttgatttttgtgccaacacatacttttctttgtaaaaatatggttgtc 40854584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 35822997 - 35822866
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| || |||| |||||||| |||||||||||||||| ||||||||||||   || ||| ||||  ||||||||||||||| ||| ||||| |  ||    
T  35822997 tctctctcacactcgcattatatttttactttctctctctattgctttgatttttgtgccaatacatatttttctttgtaaaaatatggttgtcaacgtg 35822898  T
Q  101 attgtcaatcacattgatattcaaataacatt 132  Q
     ||||||| || |||||| |||||||||||||    
T  35822897 gttgtcaaccaaattgatgttcaaataacatt 35822866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 34108877 - 34108748
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgt-aaaaagatgatt-gtccata 98  Q
    |||||| |||||||||||||| | ||||||    ||||||  |||||||||||   |||||| |||||||||||||| | ||||||||| || ||||||     
T  34108877 tctctctcatactcacattatgtttttact----ctctctactgctttgatttttgtgtcaatacatgattttcttttttaaaaagatggtttgtccatg 34108782  T
Q  99 tgattgtcaatcacattgatattcaaataacatt 132  Q
    || ||||||||||||||||| |||||||||||||    
T  34108781 tggttgtcaatcacattgatgttcaaataacatt 34108748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 31445373 - 31445418
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||    
T  31445373 catactcacattatatttttactttctctctctattgctttgattt 31445418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4292476 - 4292528
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||| |||||||||||||| | |||||||||||||||| ||||||||||||    
T  4292476 tctctctcatactcacattatgtttttactttctctctctattgctttgattt 4292528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 22541048 - 22541009
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctct 40  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  22541048 tctctcacatactcacattatatttttactttctctctct 22541009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 30064497 - 30064569
Alignment:
Q  9 atactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaa 83  Q
    ||||||||||||| | |||||||||||||| |  ||||||||||| | |||||| |||| |||||||||||||||    
T  30064497 atactcacattatgtttttactttctctctat--tgctttgattttcatgtcaatacatcattttctttgtaaaa 30064569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 44496825 - 44496699
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| ||||||||||||||||  ||| |||||||  || ||  |||||| |   || ||| |||| |||||||||||||||| ||| |||||||| |     
T  44496825 tctctctcatactcacattatattattattttctcttgctattattttgatatttgtgccaatacataattttctttgtaaaaatatggttgtccattta 44496726  T
Q  101 attgtcaatcacattgatattcaaata 127  Q
    |||||||| || |||||| ||||||||    
T  44496725 attgtcaaacaaattgatgttcaaata 44496699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 48145580 - 48145666
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtc 94  Q
    |||||||||||||||| |||||||||||||||| || ||||||| |   || ||| ||||  ||||||||||||||| ||| |||||    
T  48145580 catactcacattatatttttactttctctctctattactttgatatttgtgccaatacatacttttctttgtaaaaatatggttgtc 48145666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 10700201 - 10700156
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgattt 53  Q
    ||||||||||| || |||||||||||||||||| ||||||||||||    
T  10700201 catactcacatcatgtctttactttctctctctattgctttgattt 10700156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18111634 - 18111582
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||| |||||||||||||||| |||||||| ||||||| || |||||||||    
T  18111634 tctctctcatactcacattatatttttactttatctctctattactttgattt 18111582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41989765 - 41989717
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||||| |||||||||||||||| |||||||||||||| | ||||||||    
T  41989765 tctctctcatactcacattatatttttactttctctctttattgctttg 41989717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43942685 - 43942733
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||||| |||||||||||||| | |||||||||||||||| ||||||||    
T  43942685 tctctctcatactcacattatctttttactttctctctctattgctttg 43942733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 24532963 - 24532917
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||| |||||||||||||| | |||||||||||||||| ||||||||    
T  24532963 tctctcatactcacattatgtttttactttctctctctattgctttg 24532917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 31398172 - 31398302
Alignment:
Q  1 tctctcacatactcacattatatcttt-actttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatat 99  Q
    |||||| ||||||||||||| || ||| | ||||||||||| || ||||||||| | || ||| ||||  ||||||||||||||| | | ||||| || |    
T  31398172 tctctctcatactcacattacattttttattttctctctctattactttgattttcgtgccaatacatatttttctttgtaaaaacaaggttgtctattt 31398271  T
Q  100 gattgtcaatcacattgatattcaaataaca 130  Q
    | ||||||| || ||  || |||||||||||    
T  31398272 ggttgtcaaacaaataaatgttcaaataaca 31398302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 36703892 - 36703834
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtca 61  Q
    |||| |||||||||||||| | |||||||||||||||| |||||||  ||||| |||||    
T  36703892 tctctcatactcacattatttttttactttctctctctattgctttagtttccgtgtca 36703834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 38956639 - 38956593
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||| |||||||||||||| | |||||||||||||||| ||||||||    
T  38956639 tctctcatactcacattatctttttactttctctctctattgctttg 38956593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 35098719 - 35098674
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||||||||| ||| |||||||||||| ||| ||||||||||||    
T  35098719 catactcacattctatttttactttctctttctattgctttgattt 35098674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 41018719 - 41018760
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttg 49  Q
    |||||||||||||||| |||||||||||||||| || |||||    
T  41018719 catactcacattatatttttactttctctctctattactttg 41018760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 4e-37; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 14328432 - 14328559
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgat 102  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||| | |||||| ||||||||||||| ||||||| || ||||||||| || |    
T  14328432 tctctcatactcacattatatttttactttctctctctgttgctttgattttcgtgtcaatacatgattttcttagtaaaaatataattgtccatgtggt 14328531  T
Q  103 tgtcaatcacattgatattcaaataaca 130  Q
    ||||||||||| |||| |||||||||||    
T  14328532 tgtcaatcacaatgatgttcaaataaca 14328559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 12070909 - 12071027
Alignment:
Q  14 cacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcaca 113  Q
    |||||||||| |||||||||||| ||| |||||||||||| | |||||| ||||||||||||||||||||||||| |||||||| || ||||||||||||    
T  12070909 cacattatatttttactttctctttctattgctttgattttcgtgtcaatacatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcaca 12071008  T
Q  114 ttgatattcaaataacatt 132  Q
    ||||| |||||||||||||    
T  12071009 ttgatgttcaaataacatt 12071027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 19843533 - 19843664
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||||| ||||||| ||| |||||||||||| ||||||||||||   || ||||||||  ||||||||||||||| || |||||| |||||    
T  19843533 tctctctcatactcagattatatttttcctttctctctctattgctttgatttttgtgccaacacatacttttctttgtaaaaatataattgtcaatatg 19843632  T
Q  101 attgtcaatcacattgatattcaaataacatt 132  Q
    |||||||| || |||||| |||||||||||||    
T  19843633 attgtcaaccaaattgatgttcaaataacatt 19843664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 7084737 - 7084606
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||||| ||||||| |||||||||||| ||| ||||||||||||   |  ||||||||  ||||||||||||||| ||||||||| || ||    
T  7084737 tctctctcatactcatattatatttttactttctctttctattgctttgatttttgtaccaacacatacttttctttgtaaaaatatgattgtcaatgtg 7084638  T
Q  101 attgtcaatcacattgatattcaaataacatt 132  Q
     ||||||| || |||||| |||||||||||||    
T  7084637 gttgtcaaccaaattgatgttcaaataacatt 7084606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 40700244 - 40700373
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||||||||||||| |||||||| ||||||| || ||||||||| | |||||| | ||  |||| ||| |||||| ||||||||| || ||    
T  40700244 tctctctcatactcacattatatttttactttatctctctattactttgattttcgtgtcaatatatatttttttttataaaaacatgattgtctatttg 40700343  T
Q  101 attgtcaatcacattgatattcaaataaca 130  Q
     ||||||| || || ||| |||||||||||    
T  40700344 gttgtcaagcaaatagatgttcaaataaca 40700373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 4657362 - 4657477
Alignment:
Q  13 tcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcac 112  Q
    ||||||||||| |||||||||||||||| || ||||||| |   || ||| |||  ||||||||||||||||  ||||||||||| || ||||||| ||     
T  4657362 tcacattatatttttactttctctctctattactttgatatttatgccaatacacaattttctttgtaaaaatgtgattgtccatttggttgtcaagcaa 4657461  T
Q  113 attgatattcaaataa 128  Q
    |||||| |||||||||    
T  4657462 attgatgttcaaataa 4657477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 1040569 - 1040691
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtca 107  Q
    |||||||||||||||| |||| ||||||| ||| || |||||||||   || ||| ||||  |||||||||||||||  |||||||| || |||||||||    
T  1040569 catactcacattatatttttattttctctttctattactttgatttttgtgccaatacatacttttctttgtaaaaacgtgattgtctatttgattgtca 1040668  T
Q  108 atcacattgatattcaaataaca 130  Q
    | || || ||| |||||||||||    
T  1040669 agcaaatagatgttcaaataaca 1040691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 21738638 - 21738509
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||||||||||||| |||||||||| ||  |  ||||||| |||   || ||||||||  ||||||||||||||| ||||||||| || |     
T  21738638 tctctctcatactcacattatatttttactttctttcaat--tgctttggtttttgtgccaacacatatttttctttgtaaaaatatgattgtcaatgtc 21738541  T
Q  101 attgtcaatcacattgatattcaaataacatt 132  Q
     ||||||| || |||||| |||||||||||||    
T  21738540 gttgtcaaccaaattgatgttcaaataacatt 21738509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 29449260 - 29449388
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||||||||||||| |||||||||||||||| || |||||||||   ||  ||  |||  ||||||||||||||| ||| ||||| || ||    
T  29449260 tctctctcatactcacattatatttttactttctctctctattactttgatttttgtgcaaatgcatacttttctttgtaaaaacatg-ttgtctatttg 29449358  T
Q  101 attgtcaatcacattgatattcaaataaca 130  Q
     ||||||| || || ||| |||||||||||    
T  29449359 gttgtcaagcaaatagatgttcaaataaca 29449388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 44050064 - 44050144
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaa 82  Q
    |||||| |||||||||||||| | |||||||||| ||| | |||||||| ||||| |||||| |||| ||||||||||||||    
T  44050064 tctctctcatactcacattatgtttttactttctttctttattgctttggtttccgtgtcaatacat-attttctttgtaaa 44050144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 36774587 - 36774639
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||| |||| ||||||||||| |||||||||||||||| ||||||||||||    
T  36774587 tctctctcatattcacattatatttttactttctctctctattgctttgattt 36774639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 42532754 - 42532630
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtca 107  Q
    |||||||||||||||| |||||||| ||||||| || ||||||||| | || ||| ||||  |||||||| |||||| ||  | ||| || || ||||||    
T  42532754 catactcacattatatttttactttatctctctattactttgattttcgtgccaatacatatttttctttataaaaacatagtagtctatttggttgtca 42532655  T
Q  108 atcacattgatattcaaataacatt 132  Q
    | || || ||| |||||||||||||    
T  42532654 agcaaatagatgttcaaataacatt 42532630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 26290865 - 26290742
Alignment:
Q  9 atactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaa 108  Q
    ||||||||||||||| || || |||||| |||||| ||||| |||   |  ||||||||  ||||||||||||||| ||||||||| || |  || ||||    
T  26290865 atactcacattatattttcaccttctctttctgttactttggtttttgtaacaacacatatttttctttgtaaaaatatgattgtcaatgtagttatcaa 26290766  T
Q  109 tcacattgatattcaaataacatt 132  Q
     || |||||| |||||||||||||    
T  26290765 ccaaattgatgttcaaataacatt 26290742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 39309527 - 39309586
Alignment:
Q  70 ttttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattcaaataac 129  Q
    ||||||||||||||| |||||| || ||||||||||||| || |||||| ||||||||||    
T  39309527 ttttctttgtaaaaatatgattatcaatatgattgtcaaccaaattgattttcaaataac 39309586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7258584 - 7258532
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||| |||||| |||| || |||||||||||||||||| ||||||||||||    
T  7258584 tctctctcatacttacatcatgtctttactttctctctctattgctttgattt 7258532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 9207638 - 9207686
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||||| |||||||||||||| | |||||||||||||||| ||||||||    
T  9207638 tctctctcatactcacattatttttttactttctctctctattgctttg 9207686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10472170 - 10472122
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||||| |||||||||||||||| |||||||||||||||| || |||||    
T  10472170 tctctctcatactcacattatatttttactttctctctctattactttg 10472122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18254232 - 18254184
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||||| |||||||||||||| | |||||||||||||||| ||||||||    
T  18254232 tctctctcatactcacattatctttttactttctctctctattgctttg 18254184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 34945113 - 34945061
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||| ||||||||||| || | |||||||||||||||| ||||||||||||    
T  34945113 tctctctcatactcacatgatctttttactttctctctctattgctttgattt 34945061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 9760066 - 9760113
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgcttt 48  Q
    |||||| |||||||||||||| | |||||||||||||||| |||||||    
T  9760066 tctctctcatactcacattatctttttactttctctctctattgcttt 9760113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 42430700 - 42430779
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaa 82  Q
    |||| |||||||||||||| | ||||||| |||||||| ||| |||| ||||| |||||| || |  |||||||||||||    
T  42430700 tctctcatactcacattatgtttttacttcctctctctattgttttggtttccgtgtcaatacctacttttctttgtaaa 42430779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 27490753 - 27490671
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaa 83  Q
    |||||| || ||||| ||||| | |||| ||||||||||| ||||||||||||   ||| || |||| |||||||||||||||    
T  27490753 tctctctcacactcatattatgtttttaatttctctctctattgctttgatttttgtgttaatacatcattttctttgtaaaa 27490671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 41042304 - 41042350
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||| |||||||||||||| | |||||||||||||||| ||||||||    
T  41042304 tctctcatactcacattatctttttactttctctctctattgctttg 41042350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 42372528 - 42372582
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttcc 55  Q
    |||||| |||||||||||||| | |||||||| ||||||| || |||||||||||    
T  42372528 tctctctcatactcacattatttttttactttatctctctattcctttgatttcc 42372582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 2076626 - 2076699
Alignment:
Q  10 tactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaa 83  Q
    |||||||| ||| | |||||||||||| ||| ||||||||||||   |||||| || | |||||||||||||||    
T  2076626 tactcacactatctttttactttctctttctattgctttgatttttgtgtcaatacctcattttctttgtaaaa 2076699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 2841890 - 2841934
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||||||||||| | |||||||| ||||||||||||||||||||    
T  2841890 catactcacattattt-tttactttatctctctgttgctttgattt 2841934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 18737896 - 18737803
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtc 94  Q
    |||||| |||| ||||||||||| |||||||||| ||| | ||| ||||||||   || ||||||||  |||||||| |||||| ||| |||||    
T  18737896 tctctctcatattcacattatatttttactttctttctttattgttttgatttttgtgccaacacatacttttctttataaaaatatggttgtc 18737803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 36644095 - 36644050
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||||||||||| | |||| ||| ||||||||||||||||||||    
T  36644095 catactcacattatttttttaatttatctctctgttgctttgattt 36644050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 9e-35; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 52437543 - 52437674
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||||||||||||| |||||||| ||| ||| |||||||||||| | | |||| |||| ||||| |||||||||||||| |||||||| ||    
T  52437543 tctctctcatactcacattatatttttactttatctttctattgctttgattttcgtatcaatacataattttatttgtaaaaagatggttgtccatgtg 52437642  T
Q  101 attgtcaatcacattgatattcaaataacatt 132  Q
    ||||||||||||||||||||| ||||||||||    
T  52437643 attgtcaatcacattgatatttaaataacatt 52437674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 29877346 - 29877479
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||||| ||| |||||||||||||||||||| ||| |||| ||| | |||||| |||| |||||||||||||||| ||| |||||||||||    
T  29877346 tctctctcatactcatattgtatctttactttctctctctattgttttggttttcgtgtcaatacataattttctttgtaaaaatatggttgtccatatg 29877445  T
Q  101 attgtcaatcacattgatattcaaataacatttc 134  Q
    ||||||||| | |||||| |||||||||||||||    
T  29877446 attgtcaataaaattgatgttcaaataacatttc 29877479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 30519632 - 30519516
Alignment:
Q  16 cattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacatt 115  Q
    |||||||| |||||||| ||||| | |||||||| ||| | ||| || ||||||||||||||||||||||||| |||||||| || ||||||||||||||    
T  30519632 cattatatttttactttatctctttattgctttggttttcgtgttaatacatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacatt 30519533  T
Q  116 gatattcaaataacatt 132  Q
    ||| |||||||||||||    
T  30519532 gatgttcaaataacatt 30519516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 34818067 - 34817936
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||||| ||||||| |||||||||||| ||| ||||||||||||   || ||||||||  ||||||||||||||| ||| ||||| |||||    
T  34818067 tctctctcatactcatattatatttttactttctctttctattgctttgatttttgtgccaacacatatttttctttgtaaaaatatggttgtcaatatg 34817968  T
Q  101 attgtcaatcacattgatattcaaataacatt 132  Q
    ||||||||  | |||||| |||||||||||||    
T  34817967 attgtcaactaaattgatgttcaaataacatt 34817936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 49570045 - 49570152
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||| ||||||||||| |||||||||||||||| ||| ||||||||   || ||||||||  |||||||| |||||| ||| ||||| || ||    
T  49570045 tctctctcatattcacattatatttttactttctctctctattgttttgatttttgtgccaacacatacttttctttataaaaatatggttgtcaatgtg 49570144  T
Q  101 attgtcaa 108  Q
    ||||||||    
T  49570145 attgtcaa 49570152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 29359809 - 29359923
Alignment:
Q  18 ttatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattga 117  Q
    |||||| |||||||| ||||||| |||||||  |||   |||||||||||  |||||||| |||||| ||| ||||| || || |||||||||| |||||    
T  29359809 ttatatttttactttttctctctattgcttttgtttttgtgtcaacacatacttttctttataaaaatatggttgtcaatgtggttgtcaatcaaattga 29359908  T
Q  118 tattcaaataacatt 132  Q
    | |||||||||||||    
T  29359909 tgttcaaataacatt 29359923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 12999845 - 12999716
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||||||||||||| |||||||||||| ||| || ||||||| |   || ||| ||||  |||||||||||||||  || |||||||| |     
T  12999845 tctctctcatactcacattatatttttactttctctttctattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtccattta 12999746  T
Q  101 attgtcaatcacattgatattcaaataaca 130  Q
     ||||||| || |||||| |||||||||||    
T  12999745 gttgtcaagcaaattgatgttcaaataaca 12999716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 23665744 - 23665655
Alignment:
Q  5 tcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtc 94  Q
    |||||||||||| |||||| |||||||||||||||  |||||||| |||   |||||||||||  ||||||||||||||| ||| |||||    
T  23665744 tcacatactcacgttatatttttactttctctctcaattgctttggtttttgtgtcaacacatacttttctttgtaaaaatatggttgtc 23665655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 30745042 - 30745166
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtca 107  Q
    |||||||| ||||||  |||||||| ||||||| ||| |||| |||   |||||| |||| ||||||||||||| |  ||| ||||| ||||| ||||||    
T  30745042 catactcatattataattttactttatctctctattgttttggtttttgtgtcaatacataattttctttgtaagagtatggttgtctatatggttgtca 30745141  T
Q  108 atcacattgatattcaaataacatt 132  Q
    |||| ||| || |||||||||||||    
T  30745142 atcaaattaatgttcaaataacatt 30745166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 30766493 - 30766617
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtca 107  Q
    |||||||| ||||||  |||||||| ||||||| ||| |||| |||   |||||| |||| ||||||||||||| |  ||| ||||| ||||| ||||||    
T  30766493 catactcatattataattttactttatctctctattgttttggtttttgtgtcaatacataattttctttgtaagagtatggttgtctatatggttgtca 30766592  T
Q  108 atcacattgatattcaaataacatt 132  Q
    |||| ||| || |||||||||||||    
T  30766593 atcaaattaatgttcaaataacatt 30766617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 30973608 - 30973730
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtca 107  Q
    |||||||| ||||||| |||| ||| ||||||| || ||||||| |   |||||| ||||  |||||||||||||||  ||||||||||| |  ||||||    
T  30973608 catactcatattatatttttattttttctctctattactttgatatttgtgtcaatacatacttttctttgtaaaaatgtgattgtccatttagttgtca 30973707  T
Q  108 atcacattgatattcaaataaca 130  Q
    | || |||||| |||||||||||    
T  30973708 agcaaattgatgttcaaataaca 30973730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 33076175 - 33076297
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtca 107  Q
    |||||||||||||||| |||| ||||||||||| || ||||||| |   || ||| |||| |||||||||||||||   || |||||||| | ||| |||    
T  33076175 catactcacattatatttttattttctctctctattactttgatatttgtgccaatacataattttctttgtaaaattgtggttgtccatttaattatca 33076274  T
Q  108 atcacattgatattcaaataaca 130  Q
    | || |||||| |||||||||||    
T  33076275 agcaaattgatgttcaaataaca 33076297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 50775179 - 50775097
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaa 83  Q
    |||||| |||||||||||||| | |||||||| ||||||| |||||||| |||   |||||||||||  ||||||||||||||    
T  50775179 tctctctcatactcacattatgtttttactttatctctctattgctttggtttttgtgtcaacacatctttttctttgtaaaa 50775097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 9988007 - 9988052
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||    
T  9988007 catactcacattatatttttactttctctctctattgctttgattt 9988052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 49446820 - 49446685
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatga----ttttctttgtaaaaagatgattgtcca 96  Q
    |||||| |||||| ||||||||| |||||||||||||||| || ||||||| |   || ||| ||||      |||||||||||||||  ||||||||||    
T  49446820 tctctctcatacttacattatatttttactttctctctctattactttgatatttgtgccaatacatacatatttttctttgtaaaaatgtgattgtcca 49446721  T
Q  97 tatgattgtcaatcacattgatattcaaataacatt 132  Q
    | |  ||||||| || |||||| |||||||||||||    
T  49446720 tttagttgtcaagcaaattgatgttcaaataacatt 49446685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 17652684 - 17652769
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgt 93  Q
    |||||||||||||||| | |||||||| ||||| || |||||||||   ||||||| |||  ||||||| ||||||| ||||||||    
T  17652684 catactcacattatatttatactttctttctctattactttgatttttgtgtcaacgcatacttttcttcgtaaaaacatgattgt 17652769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 649817 - 649865
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||||| |||||||||||||| | |||||||||||||||| ||||||||    
T  649817 tctctctcatactcacattatctttttactttctctctctattgctttg 649865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 33100856 - 33100908
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||| |||||||||||||| | |||||||||||||||| ||| ||||||||    
T  33100856 tctctctcatactcacattatctttttactttctctctctattgttttgattt 33100908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 740978 - 740939
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctct 40  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  740978 tctctctcatactcacattatatttttactttctctctct 740939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 49065380 - 49065305
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaa 83  Q
    |||||||||||||| | |||||||||||||||| |||||||| |||   || ||| || | |||||||||||||||    
T  49065380 catactcacattatgtttttactttctctctctattgctttggtttttgtgccaatacttcattttctttgtaaaa 49065305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 31088231 - 31088277
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||| |||||||||||||| | |||||||||||||||| ||||||||    
T  31088231 tctctcatactcacattatctttttactttctctctctattgctttg 31088277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 48261195 - 48261281
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtc 94  Q
    |||||||||||||| | |||||||||||||||| |||||||| |||   || ||| || |  ||| ||||||||||| |||||||||    
T  48261195 catactcacattatgtttttactttctctctctattgctttggtttttgtgccaatacctcttttcctttgtaaaaatatgattgtc 48261281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 49660230 - 49660288
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtca 61  Q
    |||| |||||||||||||| | |||||||||||||||| || ||||| ||||| |||||    
T  49660230 tctctcatactcacattatttttttactttctctctctattactttggtttccgtgtca 49660288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 11947844 - 11947937
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtc 94  Q
    |||||| |||||| ||||||||| |||||||||||| ||| || |||| ||||   ||  |||||||| |||| |||||||||| ||| |||||    
T  11947844 tctctctcatactgacattatatatttactttctctttctattactttaatttttgtgcaaacacatgcttttatttgtaaaaatatggttgtc 11947937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 29706725 - 29706645
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaa 82  Q
    |||||| ||||||||||| || | || ||||||||||| | |||||||| ||||  |||||| |||| ||||||||||||||    
T  29706725 tctctctcatactcacatcatgttttgactttctctctttattgctttggtttcggtgtcaatacat-attttctttgtaaa 29706645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30536040 - 30536077
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctct 38  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  30536040 tctctctcatactcacattatatttttactttctctct 30536077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 33070658 - 33070711
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtca 61  Q
    ||||||||||| || | |||||||||||||||| || ||||||||||| |||||    
T  33070658 catactcacataatttttttactttctctctctattactttgatttccgtgtca 33070711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 35369755 - 35369800
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||||||||| | | |||||||||||||||| ||||||||||||    
T  35369755 catactcacattgtctttttactttctctctctattgctttgattt 35369800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 4e-34; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 45405587 - 45405713
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtca 107  Q
    |||| ||||||||||| |||||||||||||||| |||||||||||| | |||||| | ||||||||||||||||||| ||  |||||||| || ||||||    
T  45405587 catattcacattatatttttactttctctctctattgctttgattttcgtgtcaatatatgattttctttgtaaaaatatagttgtccatgtggttgtca 45405686  T
Q  108 atcacattgatattcaaataacatttc 134  Q
    ||||||||||| |||||||||||||||    
T  45405687 atcacattgatgttcaaataacatttc 45405713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 35067209 - 35067340
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||||||||||||| |||||||||||||||| |||||||| |||   || ||||||||  ||||||||||||||| ||| ||||| || ||    
T  35067209 tctctctcatactcacattatatttttactttctctctctattgctttggtttttgtgccaacacatacttttctttgtaaaaatatggttgtcaatgtg 35067308  T
Q  101 attgtcaatcacattgatattcaaataacatt 132  Q
     ||||||| || |||||| |||||||||||||    
T  35067309 gttgtcaaccaaattgatgttcaaataacatt 35067340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 6440130 - 6440261
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||||||||||||| |||||||||||||| | ||||||||||||   |||||| ||||  ||||||||||||||| ||| ||||| || ||    
T  6440130 tctctctcatactcacattatatttttactttctctctttcttgctttgatttttgtgtcaatacatacttttctttgtaaaaatatggttgtcaatttg 6440229  T
Q  101 attgtcaatcacattgatattcaaataacatt 132  Q
     ||||||| ||  ||||| |||||||||||||    
T  6440230 gttgtcaaccaagttgatgttcaaataacatt 6440261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 41639820 - 41639689
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgt--tgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||| |||||||||||||||| |||||||||||||||| |  |||||||||||   |||||||||||  ||||||||||||||| ||| ||||| |  ||    
T  41639820 tctctcatactcacattatatttttactttctctctctctattgctttgatttttgtgtcaacacatacttttctttgtaaaaatatggttgtcaacgtg 41639721  T
Q  101 attgtcaatcacattgatattcaaataacatt 132  Q
     ||||||| || |||||| |||||||||||||    
T  41639720 gttgtcaaccaaattgatgttcaaataacatt 41639689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 3413215 - 3413084
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||||||||||||| |||||||||| | ||| |||||||| |||   || ||| ||||||||||||||||||||| |||| |||| || |     
T  3413215 tctctctcatactcacattatatttttactttctttttctattgctttggtttttgtgccaatacatgattttctttgtaaaaatatgactgtcaatgtt 3413116  T
Q  101 attgtcaatcacattgatattcaaataacatt 132  Q
     ||||||| || |||||| |||||||||||||    
T  3413115 gttgtcaaccaaattgatgttcaaataacatt 3413084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 39453294 - 39453208
Alignment:
Q  46 tttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattcaaataacatt 132  Q
    ||||||||  ||||||| |||| |||||||||||||||| ||||||||| || || |||||||||| |||||| |||||||||||||    
T  39453294 tttgatttttctgtcaatacataattttctttgtaaaaatatgattgtcaatgtggttgtcaatcaaattgatgttcaaataacatt 39453208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 25830268 - 25830139
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||||||||||||| |||||||||||||||| || ||||||| |   || ||| ||||  |||||||||||||||  || |||||||| |     
T  25830268 tctctctcatactcacattatatttttactttctctctctattactttgatatttgtgccaatacatacttttctttgtaaaaatgtggttgtccattta 25830169  T
Q  101 attgtcaatcacattgatattcaaataaca 130  Q
     |||| || || |||||| |||||||||||    
T  25830168 gttgttaaacaaattgatgttcaaataaca 25830139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 10902753 - 10902835
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaa 83  Q
    |||||| || ||||||||||| | |||||||||||||||| ||||||||||||   || ||| |||| |||||||||||||||    
T  10902753 tctctctcacactcacattatgtttttactttctctctctattgctttgatttttgtgccaatacatcattttctttgtaaaa 10902835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 42786674 - 42786549
Alignment:
Q  9 atactcacattatatctttacttt--ctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtc 106  Q
    ||||||||||||||| ||||||||  |||||||| || |||||||||   || ||| ||||  ||||||||||||||  ||||||||| || || |||||    
T  42786674 atactcacattatatttttactttttctctctctctttctttgatttttgtgccaatacatatttttctttgtaaaatcatgattgtcaatttggttgtc 42786575  T
Q  107 aatcacattgatattcaaataacatt 132  Q
    || ||  ||||| |||||||||||||    
T  42786574 aaccaagttgatgttcaaataacatt 42786549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 67183 - 67054
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| ||||| |||||||||| |||||||  ||||||| || ||||||| |   || ||| |||||||||||||||||||||  || ||||| || ||    
T  67183 tctctctcatacccacattatatttttacttcttctctctattactttgatatttgtgccaatacatgattttctttgtaaaaatgtggttgtctatttg 67084  T
Q  101 attgtcaatcacattgatattcaaataaca 130  Q
     ||||||| || ||| || |||||||||||    
T  67083 gttgtcaagcaaattaatgttcaaataaca 67054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 43715923 - 43716052
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||||||||||||| |||||||||||||||| || ||||||| |   |  ||| ||||  ||||||| |||||||  || |||||||| |     
T  43715923 tctctctcatactcacattatatttttactttctctctctattactttgatatttgtaccaatacatacttttcttggtaaaaatgtggttgtccattta 43716022  T
Q  101 attgtcaatcacattgatattcaaataaca 130  Q
     ||||||| || |||||| |||||||||||    
T  43716023 gttgtcaagcaaattgatgttcaaataaca 43716052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 33539461 - 33539583
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtca 107  Q
    |||||||||||||||| ||||||| |||||||| || ||||||| |   || ||| ||||  ||||||||| |||||  || |||||||| |  ||||||    
T  33539461 catactcacattatatttttacttactctctctattactttgatatttgtgccaatacatacttttctttgaaaaaatgtggttgtccatttagttgtca 33539560  T
Q  108 atcacattgatattcaaataaca 130  Q
    | || |||||| |||||||||||    
T  33539561 agcaaattgatgttcaaataaca 33539583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 21526303 - 21526255
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||||| |||||||||||||| | |||||||||||||| ||||||||||    
T  21526303 tctctctcatactcacattatgtttttactttctctctttgttgctttg 21526255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 24798380 - 24798328
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||| |||||||||||||||| |||||||||||| ||| ||| ||||||||    
T  24798380 tctctctcatactcacattatatttttactttctctttctattgttttgattt 24798328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43285985 - 43285937
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||||| |||||||||||||||| |||||||||||||| | ||||||||    
T  43285985 tctctctcatactcacattatatttttactttctctctttattgctttg 43285937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 44061766 - 44061818
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||| ||||||||||||||   |||||||||||| ||||||||||||||||    
T  44061766 tctctctcatactcacattatcattttactttctctttctgttgctttgattt 44061818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 5574320 - 5574435
Alignment:
Q  17 attatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattg 116  Q
    ||||||| |||||||||| ||||| ||  ||||||||   ||| || ||||  ||||||||||||||| |||  |||| ||||  ||||||| || ||||    
T  5574320 attatatttttactttctttctctattattttgatttttgtgttaatacatacttttctttgtaaaaatatgggtgtcaatatagttgtcaaccaaattg 5574419  T
Q  117 atattcaaataacatt 132  Q
    || |||||||||||||    
T  5574420 atgttcaaataacatt 5574435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 28756586 - 28756665
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaa 82  Q
    |||| |||||||||||||||| |||| ||| ||||||| ||| |||| ||||| ||| || | || ||||||||||||||    
T  28756586 tctctcatactcacattatatttttattttttctctctattgttttggtttccgtgttaatatataattttctttgtaaa 28756665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 7777194 - 7777152
Alignment:
Q  9 atactcacattatatctttactttctctctctgttgctttgat 51  Q
    ||||||||||||||| |||||||||||||||| || |||||||    
T  7777194 atactcacattatatttttactttctctctctattactttgat 7777152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 10731602 - 10731676
Alignment:
Q  9 atactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaa 83  Q
    ||||||| ||||| | |||||||||||||||| ||||||||||||   |||||| || | |||| ||||||||||    
T  10731602 atactcatattatctttttactttctctctctattgctttgatttttgtgtcaatacttcatttcctttgtaaaa 10731676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 11253565 - 11253483
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaa 83  Q
    |||||| |||||| ||||||| | |||| ||||||||||| |||||||| |||   |||||| || | |||||||||||||||    
T  11253565 tctctctcatacttacattatctttttattttctctctctattgctttggtttttgtgtcaatacctcattttctttgtaaaa 11253483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 31249545 - 31249499
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||| |||||||||||||| | |||||||||||||||| ||||||||    
T  31249545 tctctcatactcacattatctttttactttctctctctattgctttg 31249499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 44825493 - 44825543
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||| |||||||||||||| | | |||||||||||||| ||||||||||||    
T  44825493 tctctcatactcacattatttatctactttctctctctattgctttgattt 44825543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 34873892 - 34873945
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtca 61  Q
    |||||| ||||||| | |||||||||||||||| |||||||| ||||| |||||    
T  34873892 catactaacattatttttttactttctctctctattgctttggtttccgtgtca 34873945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 36816632 - 36816587
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||||||||||| | |||||||| ||||||| ||||||||||||    
T  36816632 catactcacattatctttttactttttctctctattgctttgattt 36816587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 6e-33; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 31469000 - 31468880
Alignment:
Q  12 ctcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatca 111  Q
    |||||||||||| |||||||| | ||||| || ||||  ||| | |||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  31469000 ctcacattatatttttactttatttctctattactttagttttcgtgtcaatacatgattttctttgtaaaaagatgattgtctatatggttgtcaatca 31468901  T
Q  112 cattgatattcaaataacatt 132  Q
    |||||||||||||||||||||    
T  31468900 cattgatattcaaataacatt 31468880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 15522403 - 15522534
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| | ||||||||| |||| |||||||| ||||| | |||||||| ||| | |||||| ||||||||||||||||||||||||| |||||||| ||    
T  15522403 tctctctcctactcacataatatttttactttatctctatattgctttggttttcgtgtcaatacatgattttctttgtaaaaagatggttgtccatgtg 15522502  T
Q  101 attgtcaatcacattgatattcaaataacatt 132  Q
     ||||||||||||||||| |||||||||||||    
T  15522503 gttgtcaatcacattgatgttcaaataacatt 15522534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 16019532 - 16019656
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtca 107  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||   ||||||| |||  |||||||| |||||| ||| ||||| ||||| ||||||    
T  16019532 catactcacattatatttttactttctctctctattgctttgatttttgtgtcaacgcatatttttctttataaaaatatggttgtcaatatgcttgtca 16019631  T
Q  108 atcacattgatattcaaataacatt 132  Q
    |||| |||||| |||||||||||||    
T  16019632 atcaaattgatgttcaaataacatt 16019656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 31574962 - 31574852
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||||||||||||| |||| ||||||||||| ||||||||||||   | |||| ||||||||||||||||||||||||| |||||||| ||    
T  31574962 tctctctcatactcacattatatttttattttctctctctattgctttgatttttgtatcaatacatgattttctttgtaaaaagatggttgtccatgtg 31574863  T
Q  101 attgtcaatca 111  Q
     ||||||||||    
T  31574862 gttgtcaatca 31574852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 34757915 - 34757800
Alignment:
Q  17 attatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattg 116  Q
    ||||||| |||||||||||| ||| ||| ||||||||   || ||||||||| ||||||||||||||| |||||||||  | ||||||||||||| ||||    
T  34757915 attatatttttactttctctttctattgatttgatttttgtgccaacacatgtttttctttgtaaaaatatgattgtcagtgtgattgtcaatcaaattg 34757816  T
Q  117 atattcaaataacatt 132  Q
    ||||| ||||||||||    
T  34757815 atatttaaataacatt 34757800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 34759189 - 34759074
Alignment:
Q  17 attatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattg 116  Q
    ||||||| |||||||||||| ||| ||| ||||||||   || ||||||||| ||||||||||||||| |||||||||  | ||||||||||||| ||||    
T  34759189 attatatttttactttctctttctattgatttgatttttgtgccaacacatgtttttctttgtaaaaatatgattgtcagtgtgattgtcaatcaaattg 34759090  T
Q  117 atattcaaataacatt 132  Q
    ||||| ||||||||||    
T  34759089 atatttaaataacatt 34759074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 193588 - 193710
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtca 107  Q
    |||||||||| | ||| |||| ||||||||||| || ||||||||| | |||||| ||||  ||||||||||||||| ||||||||| || || ||||||    
T  193588 catactcacactgtatttttattttctctctctattactttgattttcgtgtcaatacatatttttctttgtaaaaacatgattgtctatttggttgtca 193687  T
Q  108 atcacattgatattcaaataaca 130  Q
    | || || ||| |||||||||||    
T  193688 agcaaatagatgttcaaataaca 193710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 11546923 - 11546794
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||| ||| ||||||| |||||||||||||||| || ||||||| |   || ||| |||| ||||| ||||||||||  || |||||||| ||    
T  11546923 tctctctcatattcatattatatttttactttctctctctattactttgatatttgtgccaatacataattttttttgtaaaaatgtggttgtccatttg 11546824  T
Q  101 attgtcaatcacattgatattcaaataaca 130  Q
    ||||||||  | |||||| |||||||||||    
T  11546823 attgtcaagtaaattgatgttcaaataaca 11546794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 19232156 - 19232104
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||| |||||||||||||||| |||||||||||||||| ||||||||||||    
T  19232156 tctctctcatactcacattatatttttactttctctctctattgctttgattt 19232104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 37997304 - 37997384
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaa 83  Q
    |||| |||||||||||||| | |||||||||||||||| ||||||||||||   |||||| || | |||||||||||||||    
T  37997304 tctctcatactcacattatctttttactttctctctctattgctttgatttttgtgtcaatacctcattttctttgtaaaa 37997384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 50980639 - 50980770
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||||||||||||| |||||||||||||| | || ||||||| |   || ||| ||||  |||||||||||||||  ||||||||||| |     
T  50980639 tctctctcatactcacattatatttttactttctctctatattactttgatatttgtgccaatacatacttttctttgtaaaaatgtgattgtccattta 50980738  T
Q  101 attgtcaatcacattgatattcaaataacatt 132  Q
     ||||| | || |||||| || ||||||||||    
T  50980739 gttgtccagcaaattgatgtttaaataacatt 50980770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 44257752 - 44257626
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||||||||||||| |||||||||||||||| ||  |||||| |   ||| || ||||  |||||||| ||||||  ||||||||||| |     
T  44257752 tctctctcatactcacattatatttttactttctctctctattattttgatatttgtgttaatacatacttttctttataaaaatgtgattgtccattta 44257653  T
Q  101 attgtcaatcacattgatattcaaata 127  Q
     ||||||| || |||||| ||||||||    
T  44257652 gttgtcaaacaaattgatgttcaaata 44257626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 49372333 - 49372240
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccat 97  Q
    |||| |||||||||||||||| |||||||| ||||||| ||| |||| |||   ||||| |||||  ||||||||||||||| ||||||||||||    
T  49372333 tctctcatactcacattatatttttactttatctctctattgatttggtttgtatgtcagcacatacttttctttgtaaaaa-atgattgtccat 49372240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 7632477 - 7632432
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||    
T  7632477 catactcacattatatttttactttctctctctattgctttgattt 7632432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 36123482 - 36123354
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||| ||||||||| |||||||||||||||| || |||||||||   ||  ||  |||  ||||||||||||||| ||| ||||| || ||    
T  36123482 tctctctcatacttacattatatttttactttctctctctattactttgatttttgtgcaaatgcatacttttctttgtaaaaacatg-ttgtctatttg 36123384  T
Q  101 attgtcaatcacattgatattcaaataaca 130  Q
    |||||||| || || ||| |||||||||||    
T  36123383 attgtcaagcaaatagatgttcaaataaca 36123354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 49585043 - 49585172
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||||||||||||| |||||||||||||||| || ||||||| |   || ||| ||||  ||||||| |||||||  || |||||||| |     
T  49585043 tctctctcatactcacattatatttttactttctctctctattactttgatatttgtgccaatacatacttttcttggtaaaaatgtggttgtccattta 49585142  T
Q  101 attgtcaatcacattgatattcaaataaca 130  Q
     ||||||| || ||| || |||||||||||    
T  49585143 gttgtcaagcaaattaatgttcaaataaca 49585172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 50890096 - 50890044
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||| |||||||||||||||| ||| |||||||||||| ||||||||||||    
T  50890096 tctctctcatactcacattatatttttgctttctctctctattgctttgattt 50890044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 50831771 - 50831696
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaa 83  Q
    ||||||||||| || |||||||||||||||||| ||||||||||||   |||||| || |  ||||||||||||||    
T  50831771 catactcacatcatgtctttactttctctctctattgctttgatttttgtgtcaagacctctttttctttgtaaaa 50831696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 55609188 - 55609058
Alignment:
Q  1 tctctcacatactcacattatatcttt-actttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatat 99  Q
    |||||| ||||||||||||| || ||| | ||||||||||| || ||||||||| | || ||| ||||  ||||||||||||||| | | ||||| || |    
T  55609188 tctctctcatactcacattacattttttattttctctctctattactttgattttcgtgccaatacatatttttctttgtaaaaacaaggttgtctattt 55609089  T
Q  100 gattgtcaatcacattgatattcaaataaca 130  Q
    | ||||||| || || ||| |||||||||||    
T  55609088 ggttgtcaagcaaatagatgttcaaataaca 55609058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 32696811 - 32696751
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaa 62  Q
    |||||| ||||||||||| |||| |||||||| ||||||| |||||||||||||| ||||||    
T  32696811 tctctctcatactcacat-atatttttactttatctctctattgctttgatttccatgtcaa 32696751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 46665208 - 46665107
Alignment:
Q  10 tactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaat 109  Q
    |||| ||||||||| |||| ||||||||||| ||||||||||||   || ||| ||||  ||||||||||||| | ||| ||||| || || ||||||||    
T  46665208 tacttacattatatttttattttctctctcttttgctttgatttttatgccaatacatacttttctttgtaaatatatggttgtcaatttggttgtcaat 46665109  T
Q  110 ca 111  Q
    ||    
T  46665108 ca 46665107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 47015063 - 47015185
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtca 107  Q
    |||||||||| |||||||||| ||||||||| |  ||||||| |||   || ||| | ||  ||||||||||||||| ||||||||| || || ||||||    
T  47015063 catactcacaatatatctttattttctctctat--tgctttggtttttgtgccaatagatacttttctttgtaaaaatatgattgtcaatgtggttgtca 47015160  T
Q  108 atcacattgatattcaaataacatt 132  Q
    | || | |||| |||||||||||||    
T  47015161 accaaactgatgttcaaataacatt 47015185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 5386421 - 5386473
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||| ||||||||||||||   |||||||||||||||| ||||||||||||    
T  5386421 tctctctcatactcacattattcttttactttctctctctattgctttgattt 5386473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10250538 - 10250490
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||||| |||||||||||||| | |||||||||||||||| ||||||||    
T  10250538 tctctctcatactcacattatctttttactttctctctctattgctttg 10250490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31559587 - 31559635
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||||| |||||||||||||||| |||||||||||||||| ||| ||||    
T  31559587 tctctctcatactcacattatatttttactttctctctctattgttttg 31559635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37297097 - 37297145
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||||| |||||||||||||| | |||||||||||||||| ||||||||    
T  37297097 tctctctcatactcacattatctttttactttctctctctattgctttg 37297145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 38792912 - 38792831
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaa 84  Q
    |||||| |||||||||||||||| ||||||||||  |||| ||||||||||||   |  ||||||||  |||||||||||||||    
T  38792912 tctctctcatactcacattatatttttactttct--ctctattgctttgatttttgtaccaacacatacttttctttgtaaaaa 38792831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40348842 - 40348890
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||||| |||||||||||||| | |||||||||||||||| ||||||||    
T  40348842 tctctctcatactcacattatctttttactttctctctctattgctttg 40348890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 1796002 - 1795875
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgat 102  Q
    |||| |||||||||||||||| |||||||| ||||||| || ||||||| |   || ||| ||||  ||||||| |||||||  || |||||||| |  |    
T  1796002 tctctcatactcacattatatttttactttatctctctattactttgatatttgtgccaatacatacttttcttggtaaaaatgtggttgtccatttagt 1795903  T
Q  103 tgtcaatcacattgatattcaaataaca 130  Q
    ||| || || |||||| |||||||||||    
T  1795902 tgttaagcaaattgatgttcaaataaca 1795875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 51930875 - 51930914
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctct 40  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  51930875 tctctctcatactcacattatatttttactttctctctct 51930914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 11068738 - 11068788
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||| |||| ||||||||| | |||||||||||||||| ||||||||||||    
T  11068738 tctctcatattcacattatctttttactttctctctctattgctttgattt 11068788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 1627581 - 1627500
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaa 82  Q
    |||||| ||||||| |||||| | ||||||||| ||||||||||||||| |||   || ||| || | ||||||||||||||    
T  1627581 tctctctcatactcgcattatgtttttactttccctctctgttgctttggtttttgtgccaatacctcattttctttgtaaa 1627500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 5249917 - 5249978
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaa 62  Q
    |||||| |||||||||||||| | |||||||||||||||| ||| |||| ||| | ||||||    
T  5249917 tctctctcatactcacattatgtttttactttctctctctattgttttggttttcgtgtcaa 5249978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 21025659 - 21025704
Alignment:
Q  10 tactcacattatatctttactttctctctctgttgctttgatttcc 55  Q
    |||||||||||| | |||||||||||||||| |||||||| |||||    
T  21025659 tactcacattatttttttactttctctctctattgctttggtttcc 21025704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 28458399 - 28458339
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaa 62  Q
    |||||| |||||||||||||| | |||||||| ||||||| |||||||||||| | ||||||    
T  28458399 tctctctcatactcacattattt-tttactttatctctctattgctttgattttcgtgtcaa 28458339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 42490957 - 42491002
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgct 46  Q
    |||||| |||||||||||||| | |||||||||||||||| |||||    
T  42490957 tctctctcatactcacattatgtttttactttctctctctattgct 42491002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 50721760 - 50721719
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttg 49  Q
    |||||||||||||||| ||||||||||||||||  |||||||    
T  50721760 catactcacattatatttttactttctctctctactgctttg 50721719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 6758805 - 6758681
Alignment:
Q  9 atactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttg-taaaaagatgattgtccatatgattgtca 107  Q
    ||||||||||||||| |||| ||| ||||||| |||||||| ||| | |||||| |||||||||||||||  ||||| ||| |||||||| || ||||||    
T  6758805 atactcacattatatttttattttatctctctattgctttggttttcgtgtcaatacatgattttctttgaaaaaaaaatggttgtccatgtggttgtca 6758706  T
Q  108 atcacattgatattcaaataacatt 132  Q
    |||| |||||| |||||||||||||    
T  6758705 atcatattgatgttcaaataacatt 6758681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 16690555 - 16690679
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtca 107  Q
    |||||||||||||||| |||||||||| ||||| |||||||| |||   || ||||||||  ||||||||||||||| ||| ||||| || || ||||||    
T  16690555 catactcacattatatttttactttctttctctattgctttggtttttgtgccaacacatacttttctttgtaaaaatatggttgtcaatgtggttgtca 16690654  T
Q  108 atcacattgatattcaaataacatt 132  Q
    | || ||||||||||||||||||||    
T  16690655 accaaattgatattcaaataacatt 16690679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 884492 - 884621
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgat 102  Q
    |||| |||||||||||||||| |||||||||||| ||| ||| ||||||||   || ||||||||  ||||| ||||||||| ||| ||||  |||||||    
T  884492 tctctcatactcacattatatttttactttctctttctattgttttgatttttgtgccaacacatacttttcattgtaaaaatatggttgttaatatgat 884591  T
Q  103 tgtcaatcacattgatattcaaataacatt 132  Q
    ||||||  | |||||| |||||||||||||    
T  884592 tgtcaactaaattgatgttcaaataacatt 884621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 14321977 - 14321850
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||| ||| ||| ||| |||| ||||||||||| |||||||| ||| | | |||| |||| |||||||||||||||  ||| |||||||||||    
T  14321977 tctctctcatattcatattgtatatttattttctctctctattgctttggttttcatatcaatacataattttctttgtaaaagtatggttgtccatatg 14321878  T
Q  101 attgtcaatcacattgatattcaaataa 128  Q
     |||||||| | |||||| |||||||||    
T  14321877 gttgtcaattaaattgatgttcaaataa 14321850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 22098304 - 22098433
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||||||||||||||| |||||||||||||||| || ||||||| |   || ||| ||||  |||||||||||||||  || |||||||| |     
T  22098304 tctctctcatactcacattatatttttactttctctctctattactttgatatttgtgccaatacatacttttctttgtaaaaatgtggttgtccattta 22098403  T
Q  101 attgtcaatcacattgatattcaaataaca 130  Q
    ||| |||| || |||||| |||||||||||    
T  22098404 attatcaagcaaattgatgttcaaataaca 22098433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 9168180 - 9168059
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtca 107  Q
    |||||||||||||||| |||| ||||||||| |  ||||||| |||   || ||||||||  ||||||||||||||  ||||||||| ||||| ||||||    
T  9168180 catactcacattatatttttattttctctctat--tgctttggtttttgtgccaacacatacttttctttgtaaaat-atgattgtcaatatggttgtca 9168084  T
Q  108 atcacattgatattcaaataacatt 132  Q
    | || |||||| |||||||||||||    
T  9168083 accaaattgatgttcaaataacatt 9168059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 38493673 - 38493805
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccc-tgtcaacacatgattttctttgtaaaaagatgattgtccatat 99  Q
    |||||| |||||||||||||||  |||||||| ||||||| ||||||||||||    || ||||||||  |||||||||| |||| |||  |||| || |    
T  38493673 tctctctcatactcacattataattttactttatctctctattgctttgattttttgtgccaacacatacttttctttgttaaaatatgggtgtcaatgt 38493772  T
Q  100 gattgtcaatcacattgatattcaaataacatt 132  Q
    | ||||||| || |||||| |||||||||||||    
T  38493773 ggttgtcaaccaaattgatgttcaaataacatt 38493805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 41699514 - 41699585
Alignment:
Q  13 tcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaa 84  Q
    |||||| |||| |||||||||||||||| ||  |||||||| | |||||| |||| ||||||||||||||||    
T  41699514 tcacataatatttttactttctctctctattaatttgattttcgtgtcaatacataattttctttgtaaaaa 41699585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 4088499 - 4088585
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtc 94  Q
    |||||||||||||||| |||||||||| ||||| |||||||| ||| | ||  || ||||   |||||||||||||| |||||||||    
T  4088499 catactcacattatatttttactttctttctctattgctttggttttcgtgctaatacatacatttctttgtaaaaatatgattgtc 4088585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 5168233 - 5168283
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||| |||||||||||||| | |||||||||||||||| ||||||||||||    
T  5168233 tctctcatactcacattatctttttactttctctctctattgctttgattt 5168283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 19522019 - 19521974
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||||||||||| | |||||||||||||||| ||||||||||||    
T  19522019 catactcacattatctttttactttctctctctattgctttgattt 19521974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 33958275 - 33958234
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttg 49  Q
    |||||||||||||||| |||||||||||||||| ||||||||    
T  33958275 catactcacattatatttttactttctctctctattgctttg 33958234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 33037568 - 33037620
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||| |||||||||||||| | |||||||| ||||||| ||||||||||||    
T  33037568 tctctctcatactcacattatctttttactttttctctctattgctttgattt 33037620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36738996 - 36739044
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||||| |||||||||||||| | |||||||||||||||| ||||||||    
T  36738996 tctctctcatactcacattatctttttactttctctctctattgctttg 36739044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39591728 - 39591776
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    ||||||||||||||||||||| |  ||||||||||||||| ||||||||    
T  39591728 tctctcacatactcacattatgttgttactttctctctctattgctttg 39591776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39592120 - 39592168
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    ||||||||||||||||||||| |  ||||||||||||||| ||||||||    
T  39592120 tctctcacatactcacattatgttgttactttctctctctattgctttg 39592168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 40364617 - 40364669
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||| |||||||||||||||| | |||||||||||||| || |||||||||    
T  40364617 tctctctcatactcacattatatttctactttctctctctattactttgattt 40364669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 7287205 - 7287130
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaa 83  Q
    |||||||||||||||| |||||||||||||||| ||| |||| |||   |||||  || | |||||||||||||||    
T  7287205 catactcacattatatttttactttctctctctattgttttggtttttgtgtcactacctcattttctttgtaaaa 7287130  T

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Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 19952050 - 19952129
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaa 82  Q
    |||| |||||||| ||||| | |||||||||| ||||| ||| ||||||||||  ||||| || | ||||||||||||||    
T  19952050 tctctcatactcatattatgtttttactttctatctctattgttttgatttccgcgtcaatacctaattttctttgtaaa 19952129  T

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Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 4719701 - 4719751
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||| |||||||||||||| | |||||||| ||||||| ||||||||||||    
T  4719701 tctctcatactcacattatgtttttactttttctctctattgctttgattt 4719751  T

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Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 35567549 - 35567631
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaa 83  Q
    |||||| |||| | ||||||||| |||||||||||||||| ||||||||| ||   |||||| || | ||||| |||||||||    
T  35567549 tctctctcatatttacattatatttttactttctctctctattgctttgaattttgtgtcaaaaccttattttatttgtaaaa 35567631  T

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Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 39054645 - 39054687
Alignment:
Q  11 actcacattatatctttactttctctctctgttgctttgattt 53  Q
    ||||||||||| | |||||||||||||||| ||||||||||||    
T  39054645 actcacattatgtttttactttctctctctattgctttgattt 39054687  T

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Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 20770180 - 20770240
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaa 62  Q
    |||||| |||||||||||||| | |||||||| ||||||| |||||||||||| | ||||||    
T  20770180 tctctctcatactcacattattt-tttactttatctctctattgctttgattttcgtgtcaa 20770240  T

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Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 21943718 - 21943637
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaa 82  Q
    |||||| |||| ||||||||| | |||| ||||||||| | ||||||||||||  ||||||| |  | ||||||||||||||    
T  21943718 tctctctcatattcacattatgtttttattttctctctttattgctttgatttttctgtcaatatcttattttctttgtaaa 21943637  T

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Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 38293374 - 38293329
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||||||||||||| ||||| |||||||||| || |||||||||    
T  38293374 catactcacattatatttttaccttctctctctattactttgattt 38293329  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 27612923 - 27613052
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatg 100  Q
    |||||| |||| ||||||||||| |||| | ||| | ||| || ||||||||| | |||||| ||||  ||||||||||||| | ||| |||||||| ||    
T  27612923 tctctctcatattcacattatatttttattatctttttctattactttgattttcgtgtcaatacatatttttctttgtaaacatatggttgtccatttg 27613022  T
Q  101 attgtcaatcacattgatattcaaataaca 130  Q
    |||||||| || || ||| |||||||||||    
T  27613023 attgtcaaacaaatagatgttcaaataaca 27613052  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 28630147 - 28630240
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtc 94  Q
    |||||| |||||||||||||||| |||||||||||| ||| || |||||||||   || ||||||||| |||| |||||||||| ||| |||||    
T  28630147 tctctctcatactcacattatatatttactttctctttctattactttgatttttgtgccaacacatgcttttatttgtaaaaatatggttgtc 28630240  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 22079586 - 22079504
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaa 83  Q
    |||||| || ||||||||||| | |||||||||||||||| ||||||||||||   |||||| |||| |||||||||| ||||    
T  22079586 tctctctcacactcacattatgtttttactttctctctctattgctttgatttttgtgtcaatacatcattttctttgcaaaa 22079504  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 26595399 - 26595479
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaa 83  Q
    |||| |||||||||||||| | |||||||||||||||| |||||||| |||   |||||| || | |||||||||||||||    
T  26595399 tctctcatactcacattatgtttttactttctctctctattgctttggtttttgtgtcaatacctcattttctttgtaaaa 26595479  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 1376421 - 1376544
Alignment:
Q  9 atactcacattatatctttacttt--ctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtc 106  Q
    ||||||||||||||| ||||||||  |||||||| || |||| || |   |||||| ||||  |||||||||||||||  || |||||||| |  |||||    
T  1376421 atactcacattatatttttactttatctctctctattacttttatatttgtgtcaatacatatttttctttgtaaaaatgtggttgtccatttagttgtc 1376520  T
Q  107 aatcacattgatattcaaataaca 130  Q
    || || |||||| |||||||||||    
T  1376521 aagcaaattgatgttcaaataaca 1376544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 1384169 - 1384292
Alignment:
Q  9 atactcacattatatctttacttt--ctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtc 106  Q
    ||||||||||||||| ||||||||  |||||||| || |||| || |   |||||| ||||  |||||||||||||||  || |||||||| |  |||||    
T  1384169 atactcacattatatttttactttatctctctctattacttttatatttgtgtcaatacatatttttctttgtaaaaatgtggttgtccatttagttgtc 1384268  T
Q  107 aatcacattgatattcaaataaca 130  Q
    || || |||||| |||||||||||    
T  1384269 aagcaaattgatgttcaaataaca 1384292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 8056773 - 8056845
Alignment:
Q  10 tactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaa 82  Q
    |||||||||||| | ||||||||||||||| ||| |||| |||||| |||||| | || ||||||||| ||||    
T  8056773 tactcacattatgtttttactttctctctccgttactttaatttccttgtcaatatataattttctttataaa 8056845  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 8645357 - 8645409
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgattt 53  Q
    |||||| ||||||||||||||   |||||||||||||||| ||||||||||||    
T  8645357 tctctctcatactcacattatccttttactttctctctctattgctttgattt 8645409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 25811861 - 25811813
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttg 49  Q
    |||||| |||||||||||||| | |||||||||||||||| ||||||||    
T  25811861 tctctctcatactcacattatctttttactttctctctctattgctttg 25811813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 31883319 - 31883199
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtca 107  Q
    ||||||||||| || | |||||||||||||||| ||||||||||||   |||||| || |  ||||||||||||||  ||| ||||||  |  |||||||    
T  31883319 catactcacatcatgtatttactttctctctctattgctttgatttttgtgtcaagacctctttttctttgtaaaattatggttgtcccaaaaattgtca 31883220  T
Q  108 atcacattgatattcaaataa 128  Q
    |||| || | | |||||||||    
T  31883219 atcaaatagttgttcaaataa 31883199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13423017 - 13423056
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctct 40  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  13423017 tctctctcatactcacattatatttttactttctctctct 13423056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 16337945 - 16337862
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaa 84  Q
    |||||| |||||||||||||||| ||||||||||||| || |||  ||| ||| | |||||| ||||   ||||||||||||||    
T  16337945 tctctctcatactcacattatatttttactttctctcactattgtcttggttttcgtgtcaatacatacatttctttgtaaaaa 16337862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 10335601 - 10335659
Alignment:
Q  3 tctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtca 61  Q
    |||| |||||||||||||| | |||||||||||||||| || ||||| ||||| |||||    
T  10335601 tctctcatactcacattatttttttactttctctctctattactttggtttccgtgtca 10335659  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 16328722 - 16328640
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaa 83  Q
    ||||||| ||||||||||||||| ||||||||||||| || ||| |||| ||| | || ||| ||||   |||||||||||||    
T  16328722 tctctcatatactcacattatatttttactttctctcactattgttttggttttcgtgccaatacatacatttctttgtaaaa 16328640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 33651132 - 33651198
Alignment:
Q  64 acatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattcaaataaca 130  Q
    |||| |||||||||||||||| ||| ||||| || |||||||||| || || ||| |||||||||||    
T  33651132 acataattttctttgtaaaaatatggttgtctatttgattgtcaaacaaatggatgttcaaataaca 33651198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23653916 - 23653879
Alignment:
Q  1 tctctcacatactcacattatatctttactttctctct 38  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  23653916 tctctctcatactcacattatatttttactttctctct 23653879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 24900829 - 24900870
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttg 49  Q
    |||| ||||||||||| |||||||||||||||| ||||||||    
T  24900829 catattcacattatatttttactttctctctctattgctttg 24900870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 31869140 - 31869245
Alignment:
Q  25 tttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattcaa 124  Q
    |||| ||||||||||| || ||||||||| | || ||| ||||  ||| ||||||||||| | || |||| || |||||||||| || || ||| |||||    
T  31869140 tttattttctctctctattactttgattttcgtgccaatacatattttcctttgtaaaaacaagagtgtctatttgattgtcaagcaaatagatgttcaa 31869239  T
Q  125 ataaca 130  Q
    ||||||    
T  31869240 ataaca 31869245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 1202 - 1324
Alignment:
Q  8 catactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtca 107  Q
    |||||||||| |||||||||| ||||||||| |  ||||||| |||   || ||| | ||  ||||||||||||||| ||||||||| || || ||||||    
T  1202 catactcacaatatatctttattttctctctat--tgctttggtttttgtgccaatagatacttttctttgtaaaaatatgattgtcaatgtggttgtca 1299  T
Q  108 atcacattgatattcaaataacatt 132  Q
    | || | |||| |||||||||||||    
T  1300 accaaactgatgttcaaataacatt 1324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 12554 - 12674
Alignment:
Q  9 atactcacattatatctttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaa 108  Q
    ||||||| ||||||| |||||||||||||||| || ||||||| |   || ||| ||||  ||||||| |||||||  || |||||||| |  |||||||    
T  12554 atactcatattatatttttactttctctctctattactttgatatttgtgccaatacatacttttcttggtaaaaatgtggttgtccatttagttgtcaa 12653  T
Q  109 tcacattgatattcaaataac 129  Q
     || |||||| ||||||||||    
T  12654 gcaaattgatgttcaaataac 12674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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