View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850_low_61 (Length: 288)
Name: NF7850_low_61
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 40451601 - 40451797
Alignment:
| Q |
15 |
tttggtgttgctgagttttgattttgagaatgagaaggactaataatatgaaaatcatagacggataattgggtccacaagtacctccactttgttgcta |
114 |
Q |
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| T |
40451601 |
tttgctgttgctgagttttgattttgagaatgagaaggactaataatatgaaaatcatagacggataattgggtccacaagtacctccactttgttgcta |
40451700 |
T |
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| Q |
115 |
atatggatgttttgacagcatccttggtggagagaaatgaaagaatatggtgaagaatgttatcgggtaagtcactaatatttttctccattttgag |
211 |
Q |
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| T |
40451701 |
atatggatgttttgacagcatccttggtggagagaaatgaaagaatatggtgaagaatgttatcgggtaagtcactaatatttttctccattttgag |
40451797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 31219136 - 31219190
Alignment:
| Q |
64 |
gaaaatcatagacggataattgggtccacaagtacctccactttgttgctaatat |
118 |
Q |
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| T |
31219136 |
gaaaatcaaagacgggtaattgggtccacaagtatctccactttgttgctaatat |
31219190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 163
Target Start/End: Original strand, 14729362 - 14729462
Alignment:
| Q |
63 |
tgaaaatcatagacggataattgggtccacaagtacctccactttgttgctaatatggatgttttgacagcatccttggtggagagaaatgaaagaatat |
162 |
Q |
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| T |
14729362 |
tgaaaatcaaagatggataaatgtgtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatat |
14729461 |
T |
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| Q |
163 |
g |
163 |
Q |
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| T |
14729462 |
g |
14729462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 173
Target Start/End: Original strand, 14740901 - 14741001
Alignment:
| Q |
73 |
agacggataattgggtccacaagtacctccactttgttgctaatatggatgttttgacagcatccttggtggagagaaatgaaagaatatggtgaagaat |
172 |
Q |
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|||| |||||||| ||||||||||| |||||||||| || |||||| || ||| | || || || ||||| ||||| || |||||||||| |||||||| |
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| T |
14740901 |
agacagataattgagtccacaagtatctccactttggtgataatattgaagttctaaccgcctctttggttgagagtaaagaaagaatataatgaagaat |
14741000 |
T |
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| Q |
173 |
g |
173 |
Q |
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| T |
14741001 |
g |
14741001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 163
Target Start/End: Complemental strand, 17594125 - 17594025
Alignment:
| Q |
63 |
tgaaaatcatagacggataattgggtccacaagtacctccactttgttgctaatatggatgttttgacagcatccttggtggagagaaatgaaagaatat |
162 |
Q |
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||||||||| ||| |||||| || ||||||||||| |||||||||| ||||||||||| ||| | |||||||| || || | ||| || |||||||||| |
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| T |
17594125 |
tgaaaatcaaagatggataaatgtgtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatat |
17594026 |
T |
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| Q |
163 |
g |
163 |
Q |
| |
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| |
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| T |
17594025 |
g |
17594025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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