View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850_low_62 (Length: 281)

Name: NF7850_low_62
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850_low_62
NF7850_low_62
[»] chr3 (7 HSPs)
chr3 (15-281)||(27105529-27105795)
chr3 (15-281)||(27098530-27098796)
chr3 (41-281)||(27062741-27062975)
chr3 (14-278)||(27069811-27070075)
chr3 (14-281)||(27085864-27086131)
chr3 (143-281)||(27041386-27041524)
chr3 (214-281)||(27056699-27056765)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 15 - 281
Target Start/End: Complemental strand, 27105795 - 27105529
Alignment:
Q  15 acctgtgcgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctg 114  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27105795 acctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctg 27105696  T
Q  115 aatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27105695 aatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggta 27105596  T
Q  215 taaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaact 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27105595 taaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaact 27105529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 281
Target Start/End: Complemental strand, 27098796 - 27098530
Alignment:
Q  15 acctgtgcgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctg 114  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27098796 acctgtgtgggaaagagagagacttattggatcaataactgaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctg 27098697  T
Q  115 aatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggta 214  Q
    |||||| |||||||||||||||||||| |||||||||||||| | || ||||||||| |||||| |||||||||||| ||||||||||||||||||  ||    
T  27098696 aatcaacacaacactacagttatgaagcaatattgttttaatattgatggtgaaatgataacaaggcttaagttgagcttgatgaaggaaagtggaaata 27098597  T
Q  215 taaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaact 281  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27098596 taaggttcacaacttttgaatcaattgcaggttatgtttggagatcaagagcaagagccttaaaact 27098530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 41 - 281
Target Start/End: Complemental strand, 27062975 - 27062741
Alignment:
Q  41 ttggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctgaatcaagacaacactacagttatgaa 140  Q
    ||||| ||||||||| ||||||||||||| || |||| ||| |||  |||||||||||||||||||| ||| ||||||||   || |||| | |||| ||    
T  27062975 ttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgtgaatcaacctaatactaaaattattaa 27062876  T
Q  141 gaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggtataaggttcacaacttttgaatcaatt 240  Q
    | ||||||||||||| || ||||| |||| | ||||||  |||||||||||||||||||| ||||       ||||||||||||||||||||||    ||    
T  27062875 gcaatattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaacgaaa------atataaggttcacaacttttgaagtgctt 27062782  T
Q  241 gcaggttatgtgtggagatcaagagcaagagccttaaaact 281  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  27062781 gcaggttatgtgtggaggtcaagagcaagagccttaaaact 27062741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 14 - 278
Target Start/End: Complemental strand, 27070075 - 27069811
Alignment:
Q  14 aacctgtgcgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttct 113  Q
    |||||||| |||||||||| | ||   ||||||||||| ||| |||||| |||||| || | || ||| |||   ||||||||||||||||||| ||| |    
T  27070075 aacctgtgtgggaaagagaaacacaagttggatcaatagctatacaaccttttccacaatgtcccatggacagaaaatctgttgcattttcaccctttgt 27069976  T
Q  114 gaatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggt 213  Q
    |||||||   || |||||| |||| ||| |||||| |||||| || ||||| |||| | ||||||  ||||||||||||||||||||  |||||| |       
T  27069975 gaatcaaactaatactacaattattaagcaatattcttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaataaaagtgaaaaa 27069876  T
Q  214 ataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaa 278  Q
    ||| |||| ||||||||||||    ||||||||||||||||||| ||||||||||||||||||||    
T  27069875 atagggtttacaacttttgaagttcttgcaggttatgtgtggaggtcaagagcaagagccttaaa 27069811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 281
Target Start/End: Complemental strand, 27086131 - 27085864
Alignment:
Q  14 aacctgtgcgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttct 113  Q
    |||||||| |||||||||| | ||   ||||||||||| ||| |||| | |||||| || | || ||| ||   ||||||||| || ||||||| ||| |    
T  27086131 aacctgtgtgggaaagagaaaaacaagttggatcaatagctatacaaacttttccacaatgtcccatggaccgagaatctgtttcactttcaccctttgt 27086032  T
Q  114 gaatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggt 213  Q
     |||||| | || |||||  | || ||  ||||||||||||| || |||||||||||| ||| ||  |||||||||||||||||||| |||| || |  |    
T  27086031 aaatcaaaataatactacgataattaaacaatattgttttaaagtagagggtgaaatgataagaagacttaagttgagtttgatgaatgaaaatgaaaat 27085932  T
Q  214 ataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaact 281  Q
    |||||||||||||||||||||    ||||||||||||||||||| |||||||||||||||||||||||    
T  27085931 ataaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaact 27085864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 143 - 281
Target Start/End: Complemental strand, 27041524 - 27041386
Alignment:
Q  143 aatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggtataaggttcacaacttttgaatcaattgc 242  Q
    ||||||||||||| || |||||||||||| |||||   ||||| ||||||||||||||  ||| || |   || ||||||||||||||||||    ||||    
T  27041524 aatattgttttaaagtagagggtgaaatgataacaggacttaaattgagtttgatgaataaaaatgaaaaaatgaggttcacaacttttgaagtgcttgc 27041425  T
Q  243 aggttatgtgtggagatcaagagcaagagccttaaaact 281  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  27041424 aggttatgtgtggaggtcaagagcaagagccttaaaact 27041386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 27056765 - 27056699
Alignment:
Q  214 ataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaact 281  Q
    |||||||||||||||||||| | | ||||||||||||||| ||| |||||||||||||||||||||||    
T  27056765 ataaggttcacaacttttgagt-acttgcaggttatgtgtagaggtcaagagcaagagccttaaaact 27056699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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