View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850_low_65 (Length: 272)
Name: NF7850_low_65
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_low_65 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 10562687 - 10562925
Alignment:
| Q |
1 |
agtagatcatgatgaagctatagtgatgacattgccaccaccaattaagaaggatgaggtgaataagaatgacatggaattgcaatcctatatgcacgaa |
100 |
Q |
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| T |
10562687 |
agtagatcatgatgaagctatagtgatgacattgccaccaccaattaagaaggatgaggtgaataagaatgacatggaattgcaatcctatatgcacgaa |
10562786 |
T |
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| Q |
101 |
tttcctaaaccctagttttttctcattcatccacgacagatgagtgatttatggtcgtta-tttttcaccttaaatcacctctctcaagtttttctcctt |
199 |
Q |
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| T |
10562787 |
tttcctaaaccctaattttttctcattcatccacgatatatgagtgatttatggtcgttattttttcacctcaaatcacctctctcaagtttttctcctt |
10562886 |
T |
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| Q |
200 |
ctagtttattttaataagtgattttcacacacatattag |
238 |
Q |
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| T |
10562887 |
ctagtttattttaataagtgattttcacacacatcttag |
10562925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 45937243 - 45937285
Alignment:
| Q |
9 |
atgatgaagctatagtgatgacattgccaccaccaattaagaa |
51 |
Q |
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| T |
45937243 |
atgatgaagctatagtgatgccattgccaccatcaattaagaa |
45937285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 228
Target Start/End: Original strand, 3673580 - 3673701
Alignment:
| Q |
107 |
aaaccctagttttttctcattcatccacgacagatgagtgatttatggtcgttatttttcaccttaaatcacctctctcaa--gtttttctccttctagt |
204 |
Q |
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| T |
3673580 |
aaaccctactttcttctcatttatccaccaaagaggggtgatttagggtca--atttttgaccccaaatcacccctctaaatcgtttttctccttccttt |
3673677 |
T |
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| Q |
205 |
ttattttaataagtgattttcaca |
228 |
Q |
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|||||| ||||||||||||||||| |
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| T |
3673678 |
ttatttaaataagtgattttcaca |
3673701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 8957249 - 8957289
Alignment:
| Q |
188 |
gtttttctccttctagtttattttaataagtgattttcaca |
228 |
Q |
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| T |
8957249 |
gtttttctccttcttttttatttaaataagtgattttcaca |
8957289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 14741472 - 14741428
Alignment:
| Q |
106 |
taaaccctagttttttctcattcatccacgacagatgagtgattt |
150 |
Q |
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| T |
14741472 |
taaaccctagttttttctccttcatccatcaaagatgagtgattt |
14741428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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