View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850_low_68 (Length: 265)

Name: NF7850_low_68
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850_low_68
NF7850_low_68
[»] chr6 (22 HSPs)
chr6 (20-264)||(27272785-27273029)
chr6 (20-261)||(27629914-27630155)
chr6 (77-261)||(20160511-20160695)
chr6 (77-261)||(22172136-22172320)
chr6 (95-213)||(28162485-28162603)
chr6 (95-213)||(13522323-13522441)
chr6 (95-213)||(33374506-33374624)
chr6 (95-213)||(8892560-8892678)
chr6 (125-218)||(22935125-22935218)
chr6 (125-218)||(23857570-23857663)
chr6 (131-201)||(4525150-4525220)
chr6 (95-213)||(8903795-8903913)
chr6 (133-218)||(22477521-22477606)
chr6 (12-201)||(29549220-29549409)
chr6 (131-184)||(4757622-4757675)
chr6 (131-184)||(4772858-4772911)
chr6 (12-213)||(24304871-24305072)
chr6 (131-184)||(27360292-27360345)
chr6 (131-184)||(27450635-27450688)
chr6 (125-213)||(13299204-13299292)
chr6 (125-213)||(15424570-15424658)
chr6 (131-171)||(16673988-16674028)
[»] scaffold2173 (1 HSPs)
scaffold2173 (188-261)||(1-74)
[»] chr4 (15 HSPs)
chr4 (77-258)||(15227698-15227879)
chr4 (77-261)||(1900085-1900269)
chr4 (12-201)||(24112425-24112614)
chr4 (12-201)||(34189279-34189468)
chr4 (95-213)||(24460912-24461030)
chr4 (125-213)||(14664891-14664979)
chr4 (12-184)||(18800961-18801133)
chr4 (131-171)||(33674162-33674202)
chr4 (131-218)||(5005749-5005836)
chr4 (131-218)||(6569732-6569819)
chr4 (131-201)||(14763626-14763696)
chr4 (131-201)||(36344834-36344904)
chr4 (125-218)||(17013873-17013966)
chr4 (131-184)||(19373140-19373193)
chr4 (131-171)||(39850502-39850542)
[»] chr5 (17 HSPs)
chr5 (77-258)||(22888292-22888473)
chr5 (125-264)||(23892073-23892212)
chr5 (14-258)||(25198788-25199032)
chr5 (95-213)||(11325634-11325752)
chr5 (95-213)||(13184852-13184970)
chr5 (95-213)||(13440698-13440816)
chr5 (95-213)||(33877087-33877205)
chr5 (12-201)||(33292282-33292471)
chr5 (125-218)||(24969891-24969984)
chr5 (138-218)||(41674589-41674669)
chr5 (131-218)||(3789399-3789486)
chr5 (131-218)||(9548745-9548832)
chr5 (131-184)||(13325080-13325133)
chr5 (131-184)||(24681310-24681363)
chr5 (131-184)||(24723837-24723890)
chr5 (131-184)||(28649099-28649152)
chr5 (131-171)||(40473801-40473841)
[»] chr8 (7 HSPs)
chr8 (95-213)||(44562932-44563050)
chr8 (95-213)||(9354453-9354571)
chr8 (95-213)||(19659305-19659423)
chr8 (125-218)||(16283307-16283400)
chr8 (131-213)||(18710450-18710532)
chr8 (131-184)||(19518441-19518494)
chr8 (125-213)||(16277412-16277500)
[»] chr2 (15 HSPs)
chr2 (95-213)||(31891624-31891742)
chr2 (77-258)||(21703415-21703596)
chr2 (95-213)||(3784481-3784599)
chr2 (95-213)||(34156838-34156956)
chr2 (95-212)||(34303600-34303717)
chr2 (95-213)||(16163426-16163544)
chr2 (95-213)||(27118515-27118633)
chr2 (131-201)||(37375021-37375091)
chr2 (131-218)||(11635483-11635570)
chr2 (131-218)||(11641672-11641759)
chr2 (131-184)||(12716933-12716986)
chr2 (125-218)||(27434738-27434831)
chr2 (125-213)||(23128865-23128953)
chr2 (131-171)||(39052169-39052209)
chr2 (131-171)||(40233359-40233399)
[»] chr7 (15 HSPs)
chr7 (77-258)||(16041137-16041318)
chr7 (76-205)||(16450199-16450328)
chr7 (95-213)||(31088657-31088775)
chr7 (95-213)||(45733292-45733410)
chr7 (77-218)||(16503571-16503712)
chr7 (77-218)||(16518607-16518748)
chr7 (12-201)||(5159268-5159457)
chr7 (131-218)||(5127857-5127944)
chr7 (131-218)||(5147531-5147618)
chr7 (131-218)||(26435122-26435209)
chr7 (131-213)||(11424972-11425054)
chr7 (131-184)||(31564624-31564677)
chr7 (131-171)||(3445159-3445199)
chr7 (131-171)||(26485982-26486022)
chr7 (131-171)||(26538111-26538151)
[»] scaffold0124 (2 HSPs)
scaffold0124 (77-213)||(20222-20358)
scaffold0124 (125-213)||(30311-30399)
[»] chr3 (21 HSPs)
chr3 (95-213)||(17994132-17994250)
chr3 (95-212)||(4625736-4625853)
chr3 (12-201)||(32438863-32439052)
chr3 (125-201)||(4893032-4893108)
chr3 (95-213)||(5652179-5652297)
chr3 (12-201)||(8211447-8211636)
chr3 (131-218)||(28116303-28116390)
chr3 (131-218)||(29665331-29665418)
chr3 (131-201)||(5466810-5466880)
chr3 (131-201)||(18277415-18277485)
chr3 (131-201)||(18292716-18292786)
chr3 (131-201)||(18308017-18308087)
chr3 (12-218)||(22871220-22871426)
chr3 (12-218)||(22886279-22886485)
chr3 (125-218)||(15893052-15893145)
chr3 (12-201)||(22387938-22388127)
chr3 (125-213)||(18051081-18051169)
chr3 (131-171)||(21674518-21674558)
chr3 (131-171)||(48465740-48465780)
chr3 (131-171)||(51781836-51781876)
chr3 (131-171)||(51796925-51796965)
[»] chr1 (3 HSPs)
chr1 (77-213)||(20460917-20461053)
chr1 (95-213)||(20340642-20340760)
chr1 (131-218)||(41793613-41793700)
[»] scaffold0260 (1 HSPs)
scaffold0260 (95-213)||(2965-3083)
[»] scaffold0336 (1 HSPs)
scaffold0336 (131-201)||(8096-8166)
[»] scaffold0089 (1 HSPs)
scaffold0089 (125-218)||(40374-40467)


Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 264
Target Start/End: Complemental strand, 27273029 - 27272785
Alignment:
Q  20 cacaagaagaaggaaacagaggttggaatggtatcctctggaacaggtcagcctacagctactgtcgcccctgttaatgctgctcagctacctccaccat 119  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27273029 cacaagaagaaggaaacagaggttggaatggtatcctctggagcaggtcagactacagctactgtcgcccctgttaatgctgctcagctacctccaccat 27272930  T
Q  120 actcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattgt 219  Q
    ||||||||| |||||| ||||||||||| |||| ||||||||||||| || | |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  27272929 actcctatgtaccgtattctcaacatccattctacccgccattttactattagtatcctttgccatcaggaccacctcaagtacctgtgaatgctattgt 27272830  T
Q  220 gcagcagaagccacagcaaccaccagttcagcaacaacaacaaca 264  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  27272829 gcagcagaagccacaacaaccaccagttcagcaacaacaacaaca 27272785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 27630155 - 27629914
Alignment:
Q  20 cacaagaagaaggaaacagaggttggaatggtatcctctggaacaggtcagcctacagctactgtcgcccctgttaatgctgctcagctacctccaccat 119  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||    
T  27630155 cacaagaagaaggaaacagaggttggaatggtatcctcgggagcaggtcagtctacggctactgtcgcccctgttaatgttgctcagctacctccaccat 27630056  T
Q  120 actcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattgt 219  Q
    || ||| | |||| || ||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27630055 acccctgtacaccatattctcagcatccattcttcccaccgttttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattgt 27629956  T
Q  220 gcagcagaagccacagcaaccaccagttcagcaacaacaaca 261  Q
    ||| ||||||||||| ||||||||||||||||||||||||||    
T  27629955 gcaacagaagccacaacaaccaccagttcagcaacaacaaca 27629914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 261
Target Start/End: Original strand, 20160511 - 20160695
Alignment:
Q  77 gctactgtcgcccctgttaatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatc 176  Q
    |||||||| ||||||||||||||| ||||  ||||||||||||||   | |||||  |||||||||||||| ||||  || |||||||||||||| ||||    
T  20160511 gctactgttgcccctgttaatgctactcaattacctccaccatacctgtttgcacattactctcaacatcctttctatccaccattttaccatcagtatc 20160610  T
Q  177 ctttgccatcaggaccacctcaggtacccgtgaatgctattgtgcagcagaagccacagcaaccaccagttcagcaacaacaaca 261  Q
    || | ||| | || | ||||||||||||||| ||||| ||||  ||||| || |  || || ||||||| ||| |||||||||||    
T  20160611 ctctaccaccgggtcaacctcaggtacccgttaatgccattgctcagcaaaaacagcaacagccaccagctcaacaacaacaaca 20160695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 261
Target Start/End: Complemental strand, 22172320 - 22172136
Alignment:
Q  77 gctactgtcgcccctgttaatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatc 176  Q
    |||||||| ||||||||||||||| ||||  ||||||||||||||   | |||||  |||||||||||||| ||||  || |||||||||||||| ||||    
T  22172320 gctactgttgcccctgttaatgctactcaattacctccaccatacctgtttgcacattactctcaacatcctttctatccaccattttaccatcagtatc 22172221  T
Q  177 ctttgccatcaggaccacctcaggtacccgtgaatgctattgtgcagcagaagccacagcaaccaccagttcagcaacaacaaca 261  Q
    || | ||| | || | ||||||||||||||| ||||| ||||  ||||| || |  || || ||||||| ||| |||||||||||    
T  22172220 ctctaccaccgggtcaacctcaggtacccgttaatgccattgctcagcaaaaacagcaacagccaccagctcaacaacaacaaca 22172136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 28162485 - 28162603
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||| | ||| | ||||| |  |||||||| ||||| ||||| || ||||| || ||||| |||||||||||||| |||| ||    
T  28162485 aatgctgctcagctacctccatcgtacccgtatgcgcaatactctcagcatcctttctttccaccattctatcatcagtatcctttgccatcgggacaac 28162584  T
Q  195 ctcaggtacccgtgaatgc 213  Q
    ||||||||||||| |||||    
T  28162585 ctcaggtacccgttaatgc 28162603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 13522441 - 13522323
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||||| ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  13522441 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 13522342  T
Q  195 ctcaggtacccgtgaatgc 213  Q
    ||||||||||||| |||||    
T  13522341 ctcaggtacccgttaatgc 13522323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 33374624 - 33374506
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||||| ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  33374624 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 33374525  T
Q  195 ctcaggtacccgtgaatgc 213  Q
    ||||||||||||| |||||    
T  33374524 ctcaggtacccgttaatgc 33374506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 8892678 - 8892560
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||||| ||||| ||||| || ||||| || ||||| ||| |||||||||| || | ||    
T  8892678 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattatatcatcagtattctttgccatcgggtcaac 8892579  T
Q  195 ctcaggtacccgtgaatgc 213  Q
    ||||||||||||| |||||    
T  8892578 ctcaggtacccgttaatgc 8892560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 22935218 - 22935125
Alignment:
Q  125 tatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 218  Q
    ||||| ||||| ||||||||||| ||||| |||||||| || ||||| ||||| |||||| | || | ||||||||||||||| ||||| ||||    
T  22935218 tatgcgccgtattctcaacatcccttctttccgccattctatcatcagtatcccttgccaccgggtcaacctcaggtacccgtcaatgcaattg 22935125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 23857663 - 23857570
Alignment:
Q  125 tatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 218  Q
    ||||| ||||| ||||||||||| ||||| |||||||| || ||||| ||||| |||||| | || | ||||||||||||||| ||||| ||||    
T  23857663 tatgcgccgtattctcaacatcccttctttccgccattctatcatcagtatcccttgccaccgggtcaacctcaggtacccgtcaatgcaattg 23857570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 4525150 - 4525220
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggt 201  Q
    ||||| ||||| |||||||||||||| || ||||| ||||| |||||||||||| |||| | |||||||||    
T  4525150 ccgtattctcagcatccgttcttcccaccgttttatcatcagtatcctttgccaccaggccaacctcaggt 4525220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 8903913 - 8903795
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||||| ||||  ||||| || ||||| || ||||| ||| |||||||||| || | ||    
T  8903913 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatctcttctttccaccattctatcatcagtattctttgccatcgggtcaac 8903814  T
Q  195 ctcaggtacccgtgaatgc 213  Q
    ||||||||||||| |||||    
T  8903813 ctcaggtacccgttaatgc 8903795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 22477606 - 22477521
Alignment:
Q  133 gtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 218  Q
    ||||||||| ||||| ||||| || ||||| || ||| | |||||||||||||| || | ||||||||||||||| ||||| ||||    
T  22477606 gtactctcagcatcccttctttccaccattctatcattagtatcctttgccatcgggtcaacctcaggtacccgttaatgcaattg 22477521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 29549220 - 29549409
Alignment:
Q  12 atggacatcacaagaagaaggaaacagaggttggaatggtatcctctggaacaggtcagcctacagctactgtcgcccctgttaatgctgctcagctacc 111  Q
    ||||||||||||||||||| ||||| || || || ||||| ||  ||||| | |||||  |||  ||||| || || ||| | ||||| |||||  | ||    
T  29549220 atggacatcacaagaagaaagaaacggaagtggggatggtgtcagctggagccggtcaatctatggctaccgttgctcctatcaatgcagctcaaatgcc 29549319  T
Q  112 tccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggt 201  Q
    |||  ||||| | ||||  ||||||||||| |||||||||||||| || ||||| ||||| || ||||||||| | || | |||||||||    
T  29549320 tccgtcatacccatatgtgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggt 29549409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 4757622 - 4757675
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgcca 184  Q
    ||||| |||||||||||||||||||| || ||||| ||||| || |||||||||    
T  4757622 ccgtattctcaacatccgttcttcccaccgttttatcatcagtaccctttgcca 4757675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 4772858 - 4772911
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgcca 184  Q
    ||||| |||||||||||||||||||| || ||||| ||||| || |||||||||    
T  4772858 ccgtattctcaacatccgttcttcccaccgttttatcatcagtaccctttgcca 4772911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 24305072 - 24304871
Alignment:
Q  12 atggacatcacaagaagaaggaaacagaggttggaatggtatcctctggaacaggtcagcctacagctactgtcgcccctgttaatgctgctcagctacc 111  Q
    ||||||| ||||||||||| ||||| || || || ||||| ||  ||||| | |||||  | |  ||||||||||| ||| | |||||||| ||  | ||    
T  24305072 atggacaccacaagaagaaagaaacggaagtagggatggtgtcagctggagccggtcaatccatggctactgtcgctcctatcaatgctgcccaaatgcc 24304973  T
Q  112 tccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaat 211  Q
    |||  ||||| | ||||  ||||| ||||| ||||| ||||| ||||||||||| ||||| || ||| ||||| | || | |||||| |||||||| |||    
T  24304972 tccgtcatacccatatgtgccgtattctcagcatcccttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaat 24304873  T
Q  212 gc 213  Q
    ||    
T  24304872 gc 24304871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 27360345 - 27360292
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgcca 184  Q
    ||||| |||||||||||||||||||| || ||||| ||||| || |||||||||    
T  27360345 ccgtattctcaacatccgttcttcccaccgttttatcatcagtaccctttgcca 27360292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 27450688 - 27450635
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgcca 184  Q
    ||||| |||||||||||||||||||| || ||||| ||||| || |||||||||    
T  27450688 ccgtattctcaacatccgttcttcccaccgttttatcatcagtaccctttgcca 27450635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 13299292 - 13299204
Alignment:
Q  125 tatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 213  Q
    ||||| ||||| ||||| ||||| ||||| ||||||||||| ||||| || ||| ||||| | || | |||||| |||||||| |||||    
T  13299292 tatgcgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgc 13299204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 15424658 - 15424570
Alignment:
Q  125 tatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 213  Q
    ||||| ||||| ||||| ||||| ||||| ||||||||||| ||||| || ||| ||||| | || | |||||| |||||||| |||||    
T  15424658 tatgcgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgc 15424570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 16673988 - 16674028
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatca 171  Q
    ||||||||||| |||||||||||||| || |||||||||||    
T  16673988 ccgtactctcagcatccgttcttcccaccgttttaccatca 16674028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2173 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold2173
Description:

Target: scaffold2173; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 1 - 74
Alignment:
Q  188 ggaccacctcaggtacccgtgaatgctattgtgcagcagaagccacagcaaccaccagttcagcaacaacaaca 261  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  1 ggaccacctcaggtacccgtgaatgctattgtgcaacagaagccacaacaaccaccagttcagcaacaacaaca 74  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 258
Target Start/End: Original strand, 15227698 - 15227879
Alignment:
Q  77 gctactgtcgcccctgttaatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatc 176  Q
    |||||||| |||||| |||||||||| ||| |||||||  | ||| | ||||| |  |||||||| ||||| ||||| || ||||| || ||||||||||    
T  15227698 gctactgttgcccctattaatgctgcccagttacctccgtcgtacccgtatgcgcaatactctcagcatcccttctttccaccattctatcatcaatatc 15227797  T
Q  177 ctttgccatcaggaccacctcaggtacccgtgaatgctattgtgcagcagaagccacagcaaccaccagttcagcaacaaca 258  Q
    |||||||||| || | ||||||||||||||| |||||| | || ||||| | || ||| || ||||||| ||| ||||||||    
T  15227798 ctttgccatcgggtcaacctcaggtacccgttaatgctgtcgttcagcaaatgcaacaacagccaccagctcaacaacaaca 15227879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 261
Target Start/End: Original strand, 1900085 - 1900269
Alignment:
Q  77 gctactgtcgcccctgttaatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatc 176  Q
    |||||||| |||||| |||||||||| ||| |||||||  | ||| | ||||| || |||||||| ||||| ||||| || ||||| || ||||| ||||    
T  1900085 gctactgttgcccctattaatgctgcccagttacctccgtcgtacccatatgcgccatactctcagcatcccttctttccaccattctatcatcagtatc 1900184  T
Q  177 ctttgccatcaggaccacctcaggtacccgtgaatgctattgtgcagcagaagccacagcaaccaccagttcagcaacaacaaca 261  Q
    |||||||||| || | ||||||||||||||| |||||  | || ||||| | || ||| || ||||||||||| || ||||||||    
T  1900185 ctttgccatcgggtcaacctcaggtacccgttaatgccgtcgttcagcaaatgcaacaacagccaccagttcaacagcaacaaca 1900269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 24112425 - 24112614
Alignment:
Q  12 atggacatcacaagaagaaggaaacagaggttggaatggtatcctctggaacaggtcagcctacagctactgtcgcccctgttaatgctgctcagctacc 111  Q
    ||||||||||||||||||| || || ||||| |||||| || || |||||||   ||   | |  |||||||| || ||||| |||||||||||| | ||    
T  24112425 atggacatcacaagaagaaagatacggaggtgggaatgatagccgctggaactaatccatccaaggctactgttgctcctgtcaatgctgctcagtttcc 24112524  T
Q  112 tccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggt 201  Q
     ||  | ||| | ||||||||||||||||| |||||||||||||| || ||||| ||||| || ||||||||| | || | |||||||||    
T  24112525 cccgtcctacccttatgcaccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggt 24112614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 34189468 - 34189279
Alignment:
Q  12 atggacatcacaagaagaaggaaacagaggttggaatggtatcctctggaacaggtcagcctacagctactgtcgcccctgttaatgctgctcagctacc 111  Q
    ||||||||||||||||||| || || ||||| |||||| || || |||||||   ||   | |  ||||||||||| ||| | |||||||||||| | ||    
T  34189468 atggacatcacaagaagaaagatacggaggtgggaatgatagccgctggaactaatccatccaaggctactgtcgctcctatcaatgctgctcagtttcc 34189369  T
Q  112 tccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggt 201  Q
     ||  | ||| | ||||||||||||||||| |||||||||||||| || ||||| ||||| || ||||||||| | || | |||||||||    
T  34189368 cccgtcctacccttatgcaccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggt 34189279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 24461030 - 24460912
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||||| ||||| ||||| || ||||| || ||||| ||| |||||||||| || | ||    
T  24461030 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtattctttgccatcgggtcaac 24460931  T
Q  195 ctcaggtacccgtgaatgc 213  Q
    ||||||||||||| |||||    
T  24460930 ctcaggtacccgttaatgc 24460912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 14664891 - 14664979
Alignment:
Q  125 tatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 213  Q
    ||||||||||| ||||| ||||| ||||| ||||||||||| ||||| || ||| ||||| | || | |||||| |||||||| |||||    
T  14664891 tatgcaccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgc 14664979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 18801133 - 18800961
Alignment:
Q  12 atggacatcacaagaagaaggaaacagaggttggaatggtatcctctggaacaggtcagcctacagctactgtcgcccctgttaatgctgctcagctacc 111  Q
    ||||||| ||||||||||| |||||||| || || ||||| ||  ||||| | |||||  |||  |||||||| || ||| | ||||| |||||  | ||    
T  18801133 atggacaccacaagaagaaagaaacagaagtggggatggtgtcagctggagccggtcaagctatggctactgttgcacctatcaatgcagctcaaatgcc 18801034  T
Q  112 tccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgcca 184  Q
    |||  ||||| | |||   ||||| ||||| ||||| ||||||||||||||||| ||||| || |||||||||    
T  18801033 tccgtcatacccatatatgccgtattctcagcatcctttcttcccgccattttatcatcagtaccctttgcca 18800961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 33674202 - 33674162
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatca 171  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  33674202 ccgtactctcagcatccgttcttcccaccattttaccatca 33674162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 218
Target Start/End: Original strand, 5005749 - 5005836
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 218  Q
    ||||| ||||| ||||| ||||||||||||||||| ||||| || ||| ||||| | || | |||||| |||||||| ||||| ||||    
T  5005749 ccgtattctcagcatcctttcttcccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattg 5005836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 218
Target Start/End: Original strand, 6569732 - 6569819
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 218  Q
    ||||| ||||| ||||| ||||| ||||||||||||||||| || ||| ||||| | || | |||||| |||||||| ||||| ||||    
T  6569732 ccgtattctcagcatcctttctttccgccattttaccatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaattg 6569819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 14763696 - 14763626
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggt 201  Q
    ||||||||||| |||||||||||||| || ||||| ||||| || ||||||||| | || | |||||||||    
T  14763696 ccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggt 14763626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 36344904 - 36344834
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggt 201  Q
    ||||||||||| |||||||||||||  || ||||| ||||| |||||||||||| | || | |||||||||    
T  36344904 ccgtactctcagcatccgttcttcctaccgttttatcatcagtatcctttgccaccgggccaacctcaggt 36344834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 17013873 - 17013966
Alignment:
Q  125 tatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 218  Q
    ||||| ||||| ||||| ||||| ||||| ||||||||||| ||||| || ||| ||||| | || | |||||| |||||||| ||||| ||||    
T  17013873 tatgcgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaattg 17013966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 19373140 - 19373193
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgcca 184  Q
    ||||||||||| |||||||||||||| || ||||| ||||| || |||||||||    
T  19373140 ccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgcca 19373193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 39850502 - 39850542
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatca 171  Q
    ||||||||||| |||||||||||||| || |||||||||||    
T  39850502 ccgtactctcagcatccgttcttcccaccgttttaccatca 39850542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 258
Target Start/End: Original strand, 22888292 - 22888473
Alignment:
Q  77 gctactgtcgcccctgttaatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatc 176  Q
    |||||||| |||||| |||||||||| ||| |||||||  | ||| | ||||| || |||||||| ||||| ||||| || ||||| || ||||| ||||    
T  22888292 gctactgttgcccctattaatgctgcccagttacctccgtcgtacccatatgcgccatactctcagcatcccttctttccaccattctatcatcagtatc 22888391  T
Q  177 ctttgccatcaggaccacctcaggtacccgtgaatgctattgtgcagcagaagccacagcaaccaccagttcagcaacaaca 258  Q
    |||||||||| || | |||||||||| |||| |||||  | || ||||| | || ||| || ||||||||||| ||||||||    
T  22888392 ctttgccatcgggtcaacctcaggtaaccgttaatgccgtcgttcagcaaatgcaacaacagccaccagttcaacaacaaca 22888473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 264
Target Start/End: Original strand, 23892073 - 23892212
Alignment:
Q  125 tatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattgtgcagc 224  Q
    ||||| ||||||||||| ||||| ||||| ||  |||| || ||||| |||||||||||||| || | ||||||||||||||| ||||| || || ||||    
T  23892073 tatgcgccgtactctcagcatcctttctttccaacattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtcaatgccatcgttcagc 23892172  T
Q  225 agaagccacagcaaccaccagttcagcaacaacaacaaca 264  Q
    | | || ||| || ||||| ||||| ||||||||||||||    
T  23892173 aaatgcaacaacagccaccggttcaacaacaacaacaaca 23892212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 258
Target Start/End: Original strand, 25198788 - 25199032
Alignment:
Q  14 ggacatcacaagaagaaggaaacagaggttggaatggtatcctctggaacaggtcagcctacagctactgtcgcccctgttaatgctgctcagctacctc 113  Q
    |||||||| ||||||||||||||||| || || ||||||||| | ||| | |||||  | |  |||||||| || ||| |||||||| | ||  | ||||    
T  25198788 ggacatcataagaagaaggaaacagaagtagggatggtatccgccggagccggtcaatccatggctactgttgctcctattaatgcttcccaattgcctc 25198887  T
Q  114 caccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 213  Q
    |  | ||| | ||||| ||||||||||| ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||||||||||| ||| || ||    
T  25198888 cgtcgtacccatatgcgccgtactctcagcatcctttctttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtactcgttaacgc 25198987  T
Q  214 tattgtgcagcagaagccacagcaaccaccagttcagcaacaaca 258  Q
      | || ||||| | || ||| || ||||||||||| ||||||||    
T  25198988 cgtcgttcagcaaatgcaacaacagccaccagttcaacaacaaca 25199032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 11325634 - 11325752
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||||| ||||| ||||| || ||||| || ||||| |||||||||||||  |||| ||    
T  11325634 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccattgggacaac 11325733  T
Q  195 ctcaggtacccgtgaatgc 213  Q
    ||||||||||||| |||||    
T  11325734 ctcaggtacccgttaatgc 11325752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 13184970 - 13184852
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||||| ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  13184970 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 13184871  T
Q  195 ctcaggtacccgtgaatgc 213  Q
    ||||||||||||| |||||    
T  13184870 ctcaggtacccgttaatgc 13184852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 13440816 - 13440698
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||||| ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  13440816 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 13440717  T
Q  195 ctcaggtacccgtgaatgc 213  Q
    ||||||||||||| |||||    
T  13440716 ctcaggtacccgttaatgc 13440698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 33877087 - 33877205
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||||| ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  33877087 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 33877186  T
Q  195 ctcaggtacccgtgaatgc 213  Q
    ||||||||||||| |||||    
T  33877187 ctcaggtacccgttaatgc 33877205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 33292282 - 33292471
Alignment:
Q  12 atggacatcacaagaagaaggaaacagaggttggaatggtatcctctggaacaggtcagcctacagctactgtcgcccctgttaatgctgctcagctacc 111  Q
    ||||||||||||||||||| || || ||||| |||||| || || |||||||   ||   | |  |||||||| || ||| | |||||||||||| | ||    
T  33292282 atggacatcacaagaagaaagatacggaggtgggaatgatagccgctggaactaatccatccaaggctactgttgctcctatcaatgctgctcagtttcc 33292381  T
Q  112 tccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggt 201  Q
     ||  | ||| | ||||||||||||||||| |||||||||||||| || ||||| ||||| || ||||||||| | || | |||||||||    
T  33292382 cccgtcctacccttatgcaccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggt 33292471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 24969891 - 24969984
Alignment:
Q  125 tatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 218  Q
    ||||| ||||| ||||| ||||| ||||| |||||||| || ||||| ||||| |||||| | || | ||||||||||||||| ||||| ||||    
T  24969891 tatgcgccgtattctcagcatcctttctttccgccattctatcatcagtatcccttgccaccgggtcaacctcaggtacccgttaatgcaattg 24969984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 41674589 - 41674669
Alignment:
Q  138 ctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 218  Q
    |||| ||||| ||||| ||||||||||||||||| || ||| ||||| | || |||||||| |||||||| ||||| ||||    
T  41674589 ctcagcatcctttctttccgccattttaccatcagtaccctctgccaccgggtccacctcaagtacccgtcaatgcaattg 41674669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 218
Target Start/End: Original strand, 3789399 - 3789486
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 218  Q
    ||||||||||| |||||||||||||| || ||||| ||||| || ||||||||| | || |  |||||||| ||||| ||||| ||||    
T  3789399 ccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccagcctcaggtgcccgtcaatgcaattg 3789486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 218
Target Start/End: Complemental strand, 9548832 - 9548745
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 218  Q
    ||||| ||||| ||||| ||||| ||||||||||||||||| || ||| ||||| | || | |||||| |||||||| ||||| ||||    
T  9548832 ccgtattctcagcatcctttctttccgccattttaccatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattg 9548745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 13325133 - 13325080
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgcca 184  Q
    ||||| |||||||||||||||||||| || ||||| ||||| || |||||||||    
T  13325133 ccgtattctcaacatccgttcttcccaccgttttatcatcagtaccctttgcca 13325080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 24681310 - 24681363
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgcca 184  Q
    ||||| ||||| ||||| ||||||||||||||||| ||||| || |||||||||    
T  24681310 ccgtattctcagcatcctttcttcccgccattttatcatcagtaccctttgcca 24681363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 24723837 - 24723890
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgcca 184  Q
    ||||| ||||| ||||| ||||||||||||||||| ||||| || |||||||||    
T  24723837 ccgtattctcagcatcctttcttcccgccattttatcatcagtaccctttgcca 24723890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 28649099 - 28649152
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgcca 184  Q
    ||||| ||||| ||||| ||||||||||||||||| ||||| || |||||||||    
T  28649099 ccgtattctcagcatcctttcttcccgccattttatcatcagtaccctttgcca 28649152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 40473841 - 40473801
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatca 171  Q
    ||||||||||| |||||||||||||| || |||||||||||    
T  40473841 ccgtactctcagcatccgttcttcccaccgttttaccatca 40473801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 44562932 - 44563050
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||||| ||||| ||||| || ||||| || ||||| |||||||||||||| |||| ||    
T  44562932 aatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagcatcctttctttccaccattctatcatcagtatcctttgccatcgggacaac 44563031  T
Q  195 ctcaggtacccgtgaatgc 213  Q
    ||||||||||||| |||||    
T  44563032 ctcaggtacccgttaatgc 44563050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 9354453 - 9354571
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||||| ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  9354453 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 9354552  T
Q  195 ctcaggtacccgtgaatgc 213  Q
    ||||||||||||| |||||    
T  9354553 ctcaggtacccgttaatgc 9354571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 19659423 - 19659305
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||||| ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  19659423 aatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 19659324  T
Q  195 ctcaggtacccgtgaatgc 213  Q
    ||||||||||||| |||||    
T  19659323 ctcaggtacccgttaatgc 19659305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 16283307 - 16283400
Alignment:
Q  125 tatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 218  Q
    ||||| ||||||||||| ||||| ||||| |||||||| || ||| | |||||||||||| |||| | ||||||||||||| | ||||| ||||    
T  16283307 tatgcgccgtactctcagcatcctttctttccgccattctatcattagtatcctttgccaccaggtcaacctcaggtacccattaatgcaattg 16283400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 18710450 - 18710532
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 213  Q
    ||||||||||| |||||||||||||| || ||||| ||||| || ||||||||| | || | ||||||||| ||||| |||||    
T  18710450 ccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggttcccgtcaatgc 18710532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 19518494 - 19518441
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgcca 184  Q
    ||||| ||||| ||||| ||||||||||||||||| ||||| || |||||||||    
T  19518494 ccgtattctcagcatcctttcttcccgccattttatcatcagtaccctttgcca 19518441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 16277412 - 16277500
Alignment:
Q  125 tatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 213  Q
    ||||| ||||| ||||| ||||| ||||| ||||||||||| ||||| || ||| ||||| | || | |||||| |||||||| |||||    
T  16277412 tatgcgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgc 16277500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 31891742 - 31891624
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||||| ||||| ||||| || ||||| || ||||| |||||||||||||| |||| ||    
T  31891742 aatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagcatcctttctttccaccattctatcatcagtatcctttgccatcgggacaac 31891643  T
Q  195 ctcaggtacccgtgaatgc 213  Q
    ||||||||||||| |||||    
T  31891642 ctcaggtacccgttaatgc 31891624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 258
Target Start/End: Complemental strand, 21703596 - 21703415
Alignment:
Q  77 gctactgtcgcccctgttaatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatc 176  Q
    |||||||| |||||| ||||||||||  || |||||||  | ||| | ||||| || |||||||| ||||| ||||| || ||||| || ||||| ||||    
T  21703596 gctactgttgcccctattaatgctgcctagttacctccgtcgtacccatatgcgccatactctcagcatcccttctttccaccattctatcatcagtatc 21703497  T
Q  177 ctttgccatcaggaccacctcaggtacccgtgaatgctattgtgcagcagaagccacagcaaccaccagttcagcaacaaca 258  Q
    |||||||||| || | ||||||||||||||| |||||  | || || || | || ||| || ||||||||||| ||||||||    
T  21703496 ctttgccatcgggtcaacctcaggtacccgttaatgccgtcgttcaacaaatgcaacaacagccaccagttcaacaacaaca 21703415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 3784481 - 3784599
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||||| ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  3784481 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 3784580  T
Q  195 ctcaggtacccgtgaatgc 213  Q
    ||||||||||||| |||||    
T  3784581 ctcaggtacccgttaatgc 3784599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 34156838 - 34156956
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||||| ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  34156838 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 34156937  T
Q  195 ctcaggtacccgtgaatgc 213  Q
    ||||||||||||| |||||    
T  34156938 ctcaggtacccgttaatgc 34156956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 212
Target Start/End: Complemental strand, 34303717 - 34303600
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||||| ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  34303717 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 34303618  T
Q  195 ctcaggtacccgtgaatg 212  Q
    ||||||||||||| ||||    
T  34303617 ctcaggtacccgttaatg 34303600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 16163426 - 16163544
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||||| ||||| ||||| || ||||| || ||||| ||| |||||||||| || | ||    
T  16163426 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtattctttgccatcgggtcaac 16163525  T
Q  195 ctcaggtacccgtgaatgc 213  Q
    ||||||||||||| |||||    
T  16163526 ctcaggtacccgttaatgc 16163544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 27118515 - 27118633
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| |  |||| |  |||||||| ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  27118515 aatgctgctcagctacctccgtcgtacccgcatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 27118614  T
Q  195 ctcaggtacccgtgaatgc 213  Q
    ||||||||||||| |||||    
T  27118615 ctcaggtacccgttaatgc 27118633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 37375021 - 37375091
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggt 201  Q
    ||||||||||| ||||||||||||||||| ||||| ||||| || ||||||||| | || | |||||||||    
T  37375021 ccgtactctcagcatccgttcttcccgccgttttatcatcagtaccctttgccaccgggccaacctcaggt 37375091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 218
Target Start/End: Complemental strand, 11635570 - 11635483
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 218  Q
    ||||| ||||| ||||| ||||||||||||||||| ||||| || ||| ||||| | || | |||||| |||||||| ||||| ||||    
T  11635570 ccgtattctcagcatcctttcttcccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattg 11635483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 218
Target Start/End: Complemental strand, 11641759 - 11641672
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 218  Q
    ||||| ||||| ||||| ||||||||||||||||| ||||| || ||| ||||| | || | |||||| |||||||| ||||| ||||    
T  11641759 ccgtattctcagcatcctttcttcccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattg 11641672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 12716986 - 12716933
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgcca 184  Q
    ||||| ||||| ||||| ||||||||||||||||| ||||| || |||||||||    
T  12716986 ccgtattctcagcatcctttcttcccgccattttatcatcagtaccctttgcca 12716933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 27434831 - 27434738
Alignment:
Q  125 tatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 218  Q
    ||||| ||||||||||| ||||| ||||| || ||||| || ||||| || ||||||||| | || | |||||| |||||||| ||||| ||||    
T  27434831 tatgcgccgtactctcagcatcctttctttccaccattctatcatcagtaccctttgccaccgggtcaacctcaagtacccgttaatgcaattg 27434738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 23128953 - 23128865
Alignment:
Q  125 tatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 213  Q
    ||||| ||||| ||||| ||||| ||||| ||||||||||| ||||| || ||| ||||| | || | |||||| |||||||| |||||    
T  23128953 tatgcgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgc 23128865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 39052209 - 39052169
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatca 171  Q
    ||||||||||| |||||||||||||| || |||||||||||    
T  39052209 ccgtactctcagcatccgttcttcccaccgttttaccatca 39052169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 40233359 - 40233399
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatca 171  Q
    ||||||||||| |||||||||||||| || |||||||||||    
T  40233359 ccgtactctcagcatccgttcttcccaccgttttaccatca 40233399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 258
Target Start/End: Original strand, 16041137 - 16041318
Alignment:
Q  77 gctactgtcgcccctgttaatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatc 176  Q
    |||||||| |||||| |||||||||| ||| |||||||  | ||| | ||||| || |||||||| ||||| ||||| || ||||| || ||||| ||||    
T  16041137 gctactgttgcccctattaatgctgcccagttacctccgtcgtacccatatgcgccatactctcagcatcccttctttccaccattctatcatcagtatc 16041236  T
Q  177 ctttgccatcaggaccacctcaggtacccgtgaatgctattgtgcagcagaagccacagcaaccaccagttcagcaacaaca 258  Q
    ||||| |||| || | ||||||||||||||| ||| |  | || ||||| | || ||| || ||||||||||| ||||||||    
T  16041237 ctttgtcatcgggtcaacctcaggtacccgttaattccgtcgttcagcaaatgcaacaacagccaccagttcaacaacaaca 16041318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 16450328 - 16450199
Alignment:
Q  76 agctactgtcgcccctgttaatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatat 175  Q
    ||||||||| |||||| |||||||||| ||| |||||||  | ||| | || || | ||||||||| ||||| ||||| || |||||||| ||||| |||    
T  16450328 agctactgttgcccctattaatgctgcccagttacctccgtcgtacccgtacgcgcagtactctcagcatcccttctttccaccattttatcatcagtat 16450229  T
Q  176 cctttgccatcaggaccacctcaggtaccc 205  Q
    ||||||||||| || | |||||||||||||    
T  16450228 cctttgccatcgggtcaacctcaggtaccc 16450199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 31088775 - 31088657
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||||| ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  31088775 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 31088676  T
Q  195 ctcaggtacccgtgaatgc 213  Q
    ||||||||||||| |||||    
T  31088675 ctcaggtacccgttaatgc 31088657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 45733292 - 45733410
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||||| ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  45733292 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 45733391  T
Q  195 ctcaggtacccgtgaatgc 213  Q
    ||||||||||||| |||||    
T  45733392 ctcaggtacccgttaatgc 45733410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 218
Target Start/End: Complemental strand, 16503712 - 16503571
Alignment:
Q  77 gctactgtcgcccctgttaatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatc 176  Q
    |||||||| || ||| |||||||||| ||  | |||||  ||||| | ||||| ||||||||||| ||||| ||||| |||||||| || ||||| ||||    
T  16503712 gctactgttgctcctattaatgctgcccaaatgcctccgtcatacccatatgcgccgtactctcagcatcctttctttccgccattctatcatcagtatc 16503613  T
Q  177 ctttgccatcaggaccacctcaggtacccgtgaatgctattg 218  Q
    | |||||| | || | ||||||||||||||| ||||| ||||    
T  16503612 ccttgccaccgggtcaacctcaggtacccgttaatgcaattg 16503571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 218
Target Start/End: Complemental strand, 16518748 - 16518607
Alignment:
Q  77 gctactgtcgcccctgttaatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatc 176  Q
    |||||||| || ||| |||||||||| ||  | |||||  ||||| | ||||| ||||||||||| ||||| ||||| |||||||| || ||||| ||||    
T  16518748 gctactgttgctcctattaatgctgcccaaatgcctccgtcatacccatatgcgccgtactctcagcatcctttctttccgccattctatcatcagtatc 16518649  T
Q  177 ctttgccatcaggaccacctcaggtacccgtgaatgctattg 218  Q
    | |||||| | || | ||||||||||||||| ||||| ||||    
T  16518648 ccttgccaccgggtcaacctcaggtacccgttaatgcaattg 16518607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 5159268 - 5159457
Alignment:
Q  12 atggacatcacaagaagaaggaaacagaggttggaatggtatcctctggaacaggtcagcctacagctactgtcgcccctgttaatgctgctcagctacc 111  Q
    ||||||||||||||||||| || || ||||| |||||| || || |||||||   ||   | |  |||||||| || ||| | |||||||||||| | ||    
T  5159268 atggacatcacaagaagaaagatacggaggtgggaatgatagccgctggaactaatccatccatggctactgttgctcctatcaatgctgctcagtttcc 5159367  T
Q  112 tccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggt 201  Q
     ||  | ||| | ||||||||||||||||| |||||||||||||| || ||||| ||||| || ||||||||| | || | |||||||||    
T  5159368 cccgtcctacccttatgcaccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggt 5159457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 218
Target Start/End: Original strand, 5127857 - 5127944
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 218  Q
    ||||| ||||| ||||| ||||| ||||||||||| ||||| |||||| ||||| | || | |||||| |||||||| ||||| ||||    
T  5127857 ccgtattctcagcatcctttctttccgccattttatcatcagtatcctctgccaccgggtcaacctcaagtacccgttaatgcaattg 5127944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 218
Target Start/End: Complemental strand, 5147618 - 5147531
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 218  Q
    ||||||||||| |||||||||||||| || ||||| ||||| || ||| ||||| | || | |||||| |||||||| ||||| ||||    
T  5147618 ccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattg 5147531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 218
Target Start/End: Original strand, 26435122 - 26435209
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 218  Q
    ||||||||||| |||||||||||||| || ||||| ||||| || ||| ||||| | || | |||||| |||||||| ||||| ||||    
T  26435122 ccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattg 26435209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 11425054 - 11424972
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 213  Q
    ||||| ||||| ||||| ||||| ||||||||||||||||| || ||| ||||| | || | |||||| |||||||| |||||    
T  11425054 ccgtattctcagcatcctttctttccgccattttaccatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgc 11424972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 31564677 - 31564624
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgcca 184  Q
    ||||| |||||||||||||||||||| || ||||| ||||| || |||||||||    
T  31564677 ccgtattctcaacatccgttcttcccaccgttttatcatcagtaccctttgcca 31564624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 3445159 - 3445199
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatca 171  Q
    ||||||||||| |||||||||||||| || |||||||||||    
T  3445159 ccgtactctcagcatccgttcttcccaccgttttaccatca 3445199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 26486022 - 26485982
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatca 171  Q
    ||||||||||| |||||||||||||| || |||||||||||    
T  26486022 ccgtactctcagcatccgttcttcccaccgttttaccatca 26485982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 26538151 - 26538111
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatca 171  Q
    ||||||||||| |||||||||||||| || |||||||||||    
T  26538151 ccgtactctcagcatccgttcttcccaccgttttaccatca 26538111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 213
Target Start/End: Original strand, 20222 - 20358
Alignment:
Q  77 gctactgtcgcccctgttaatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatc 176  Q
    |||||||| |||||| |||||||||| ||| |||||||  | ||| | ||||| || |||||||| ||||| ||||| ||  |||| || ||||| ||||    
T  20222 gctactgttgcccctattaatgctgcccagttacctccgtcgtacccatatgcgccatactctcagcatcccttctttccatcattctatcatcagtatc 20321  T
Q  177 ctttgccatcaggaccacctcaggtacccgtgaatgc 213  Q
    |||||||||| || | ||||||||||||||| |||||    
T  20322 ctttgccatcgggtcaacctcaggtacccgttaatgc 20358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 30311 - 30399
Alignment:
Q  125 tatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 213  Q
    ||||| ||||| ||||| ||||| ||||| ||||||||||| ||||| || ||| ||||| | || | |||||| |||||||| |||||    
T  30311 tatgcgccgtattctcagcatcccttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgc 30399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 17994250 - 17994132
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||||| ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  17994250 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 17994151  T
Q  195 ctcaggtacccgtgaatgc 213  Q
    ||||||||||||| |||||    
T  17994150 ctcaggtacccgttaatgc 17994132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 212
Target Start/End: Original strand, 4625736 - 4625853
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||||| ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  4625736 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattatatcatcagtatcctttgccatcgggtcaac 4625835  T
Q  195 ctcaggtacccgtgaatg 212  Q
    ||||||||||||| ||||    
T  4625836 ctcaggtacccgttaatg 4625853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 32438863 - 32439052
Alignment:
Q  12 atggacatcacaagaagaaggaaacagaggttggaatggtatcctctggaacaggtcagcctacagctactgtcgcccctgttaatgctgctcagctacc 111  Q
    ||||||||||||||||||| || || ||||| |||||| || || |||||||   ||   | |  |||||||| || ||||| |||||||||||| | ||    
T  32438863 atggacatcacaagaagaaagatacggaggtgggaatgatagccgctggaactaatccatccaaggctactgttgctcctgtcaatgctgctcagtttcc 32438962  T
Q  112 tccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggt 201  Q
     ||  | ||| | ||||||||||||||||| |||||||||||||| || ||||| ||||| || ||||||||| | || | |||||||||    
T  32438963 cccgtcctacccttatgcaccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggt 32439052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 4893032 - 4893108
Alignment:
Q  125 tatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggt 201  Q
    ||||||||||||||||| |||||||||||||| || ||||| ||||| || ||||||||| | || | |||||||||    
T  4893032 tatgcaccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggt 4893108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 5652179 - 5652297
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| | ||||| |  |||||||| ||||| ||||| || ||||| || ||||| |||| ||||| ||| || | ||    
T  5652179 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcgtttgcaatcgggtcaac 5652278  T
Q  195 ctcaggtacccgtgaatgc 213  Q
    ||||||||||||| |||||    
T  5652279 ctcaggtacccgttaatgc 5652297  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 8211447 - 8211636
Alignment:
Q  12 atggacatcacaagaagaaggaaacagaggttggaatggtatcctctggaacaggtcagcctacagctactgtcgcccctgttaatgctgctcagctacc 111  Q
    ||||||| ||||||||||| ||||| || || || ||||| ||  ||||| | |||||  | |  |||||||| || ||| | ||||| |||||  | ||    
T  8211447 atggacaccacaagaagaaagaaacggaagtggggatggtgtcagctggagccggtcaatccatggctactgttgctcctatcaatgcagctcaaatgcc 8211546  T
Q  112 tccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggt 201  Q
    |||  ||||| | ||||| ||||||||||| |||||||||||||| || ||||| ||||| || ||||||||| | || | |||||||||    
T  8211547 tccgtcatacccatatgcgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggt 8211636  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 218
Target Start/End: Complemental strand, 28116390 - 28116303
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 218  Q
    ||||| ||||| ||||| ||||||||||||||||| ||||| || ||| ||||| | || | |||||| |||||||| ||||| ||||    
T  28116390 ccgtattctcagcatcctttcttcccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattg 28116303  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 218
Target Start/End: Complemental strand, 29665418 - 29665331
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 218  Q
    ||||||||||| |||||||||||||| || ||||| ||||| || ||||||||| | || | |||||| || ||||| ||||| ||||    
T  29665418 ccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggtcaacctcaagtgcccgtcaatgcaattg 29665331  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 5466810 - 5466880
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggt 201  Q
    ||||| ||||| |||||||||||||| |||||||| ||||| || ||||||||| | || | |||||||||    
T  5466810 ccgtattctcagcatccgttcttcccaccattttatcatcagtaccctttgccacccggccaacctcaggt 5466880  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 18277485 - 18277415
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggt 201  Q
    ||||||||||| |||||||||||||| || ||||| ||||| || ||||||||| | || | |||||||||    
T  18277485 ccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggt 18277415  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 18292786 - 18292716
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggt 201  Q
    ||||||||||| |||||||||||||| || ||||| ||||| || ||||||||| | || | |||||||||    
T  18292786 ccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggt 18292716  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 18308087 - 18308017
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggt 201  Q
    ||||||||||| |||||||||||||| || ||||| ||||| || ||||||||| | || | |||||||||    
T  18308087 ccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggt 18308017  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 22871426 - 22871220
Alignment:
Q  12 atggacatcacaagaagaaggaaacagaggttggaatggtatcctctggaacaggtcagcctacagctactgtcgcccctgttaatgctgctcagctacc 111  Q
    ||||||| ||||||||||| ||||| || || || ||||| ||  ||||| | |||||  |||  |||||||| || ||| | ||||| |||||| | ||    
T  22871426 atggacaccacaagaagaaagaaacggaagtggggatggtgtcagctggagccggtcaatctatggctactgttgcacctatcaatgcagctcagatgcc 22871327  T
Q  112 tccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaat 211  Q
    |||  ||||| | |||   ||||| ||||| |||||||||||||| || ||||| ||||| || ||||||||| |||| |  ||||| || ||||| |||    
T  22871326 tccgtcatacccatatatgccgtattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccaggccagcctcaagtgcccgtcaat 22871227  T
Q  212 gctattg 218  Q
    || ||||    
T  22871226 gcaattg 22871220  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 22886485 - 22886279
Alignment:
Q  12 atggacatcacaagaagaaggaaacagaggttggaatggtatcctctggaacaggtcagcctacagctactgtcgcccctgttaatgctgctcagctacc 111  Q
    ||||||| ||||||||||| ||||| || || || ||||| ||  ||||| | |||||  |||  |||||||| || ||| | ||||| |||||| | ||    
T  22886485 atggacaccacaagaagaaagaaacggaagtggggatggtgtcagctggagccggtcaatctatggctactgttgcacctatcaatgcagctcagatgcc 22886386  T
Q  112 tccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaat 211  Q
    |||  ||||| | |||   ||||| ||||| |||||||||||||| || ||||| ||||| || ||||||||| |||| |  ||||| || ||||| |||    
T  22886385 tccgtcatacccatatatgccgtattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccaggccagcctcaagtgcccgtcaat 22886286  T
Q  212 gctattg 218  Q
    || ||||    
T  22886285 gcaattg 22886279  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 15893145 - 15893052
Alignment:
Q  125 tatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 218  Q
    ||||| ||||||||||| ||||| ||||| ||||| || || ||||| || ||||||||| | || | |||||| |||||||| ||||| ||||    
T  15893145 tatgcgccgtactctcagcatcctttctttccgcccttctatcatcagtaccctttgccaccgggtcaacctcaagtacccgttaatgcaattg 15893052  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 22388127 - 22387938
Alignment:
Q  12 atggacatcacaagaagaaggaaacagaggttggaatggtatcctctggaacaggtcagcctacagctactgtcgcccctgttaatgctgctcagctacc 111  Q
    ||||||||||||||||||| || || ||||| |||||| || || |||||||   ||   | |  |||||||| || ||| | |||||||||||| | ||    
T  22388127 atggacatcacaagaagaaagatacggaggtgggaatgatagccgctggaactaatccatccatggctactgttgctcctatcaatgctgctcagtttcc 22388028  T
Q  112 tccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggt 201  Q
     ||  | ||| | |||||||| |||||||| ||||||||||||||  | ||||| ||||| || ||||||||| | || | |||||||||    
T  22388027 cccgtcctacccttatgcaccatactctcagcatccgttcttcccatcgttttatcatcagtaccctttgccaccgggccaacctcaggt 22387938  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 18051081 - 18051169
Alignment:
Q  125 tatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 213  Q
    ||||| ||||| ||||||||||| ||||| |||||||| || ||||| || ||| ||||| | || | |||||| |||||||| |||||    
T  18051081 tatgcgccgtattctcaacatcctttctttccgccattctatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgc 18051169  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 21674518 - 21674558
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatca 171  Q
    ||||| ||||| ||||||||||| |||||||||||||||||    
T  21674518 ccgtattctcagcatccgttctttccgccattttaccatca 21674558  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 48465740 - 48465780
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatca 171  Q
    ||||||||||| |||||||||||||| || |||||||||||    
T  48465740 ccgtactctcagcatccgttcttcccaccgttttaccatca 48465780  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 51781836 - 51781876
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatca 171  Q
    ||||||||||| |||||||||||||| || |||||||||||    
T  51781836 ccgtactctcagcatccgttcttcccaccgttttaccatca 51781876  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 51796925 - 51796965
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatca 171  Q
    ||||||||||| |||||||||||||| || |||||||||||    
T  51796925 ccgtactctcagcatccgttcttcccaccgttttaccatca 51796965  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 213
Target Start/End: Original strand, 20460917 - 20461053
Alignment:
Q  77 gctactgtcgcccctgttaatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatc 176  Q
    |||||| | |||||| |||||||||| ||| ||||||| || ||| | ||||| |  |||||||| ||||| ||||| || ||||| || ||||||||||    
T  20460917 gctactattgcccctattaatgctgcccagttacctccgccgtacccgtatgcgcaatactctcagcatcctttctttccaccattctatcatcaatatc 20461016  T
Q  177 ctttgccatcaggaccacctcaggtacccgtgaatgc 213  Q
    || | ||||| || | ||||||||||||||| |||||    
T  20461017 ctctaccatcgggtcaacctcaggtacccgttaatgc 20461053  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 20340760 - 20340642
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| | || || |  |||||||| ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  20340760 aatgctgctcagctacctccgtcgtacccgtacgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 20340661  T
Q  195 ctcaggtacccgtgaatgc 213  Q
    ||||||||||||| |||||    
T  20340660 ctcaggtacccgtcaatgc 20340642  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 218
Target Start/End: Complemental strand, 41793700 - 41793613
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 218  Q
    ||||| ||||||||||| ||||||||||||||||| ||||| || ||| ||||| | || | |||||| || ||||| ||||| ||||    
T  41793700 ccgtattctcaacatcctttcttcccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattg 41793613  T

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Target: scaffold0260 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 3083 - 2965
Alignment:
Q  95 aatgctgctcagctacctccaccatactcctatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccac 194  Q
    ||||||||||||||||||||  | ||| | || || |  |||||||| ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||    
T  3083 aatgctgctcagctacctccgtcgtacccgtacgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 2984  T
Q  195 ctcaggtacccgtgaatgc 213  Q
    ||||||||||||| |||||    
T  2983 ctcaggtacccgtcaatgc 2965  T

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Target: scaffold0336 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 8096 - 8166
Alignment:
Q  131 ccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggt 201  Q
    ||||| ||||| |||||||||||||| || ||||| ||||| |||||||||||| |||| | |||||||||    
T  8096 ccgtattctcagcatccgttcttcccaccgttttatcatcagtatcctttgccaccaggccaacctcaggt 8166  T

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Target: scaffold0089 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 40467 - 40374
Alignment:
Q  125 tatgcaccgtactctcaacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 218  Q
    ||||| ||||| ||||| ||||| ||||| | |||||| || ||||| || ||||||||| | || | ||||||||||||||| ||||| ||||    
T  40467 tatgcgccgtattctcagcatcctttctttctgccattctatcatcagtaccctttgccaccgggtcaacctcaggtacccgtaaatgcaattg 40374  T

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