View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7850_low_7 (Length: 725)
Name: NF7850_low_7
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_low_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 645; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 16 - 712
Target Start/End: Original strand, 27876563 - 27877259
Alignment:
| Q |
16 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27876563 |
acatcacgtacacaggacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
27876662 |
T |
|
| Q |
116 |
tggtgagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27876663 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctagg |
27876762 |
T |
|
| Q |
216 |
agagttctattcatccgctctgccacaccattctgctgaggtgtatgtgcaaccgtgaattgccttacaataccctcttgtttacaaaatgctagaaact |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27876763 |
agagttctattcatccgctctgccacaccattctgctgaggtgtatgtgcaaccgtgaattgccttacaataccctcttgtttacaaaatgctagaaact |
27876862 |
T |
|
| Q |
316 |
cgccatctacatattctcctccattgtctgtcctcaagcacttaattttcttcccagtttcaagctctatttgtgctttgaatgccttgaatactggaaa |
415 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27876863 |
cgccatctacatattctcctccattatctgtcctcaagcacttaattttcttcccagtttcaagctctatttgtgctttgaatgccttgaatactggaaa |
27876962 |
T |
|
| Q |
416 |
cacattcgacttcttcttgattgggtacacccataatcttctagaatagtcatcaatgaatgacacgaagtatcttgctcctccctgagatatttctggt |
515 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
27876963 |
cacatctgacttcttcttgattgggtacacccataatcttctggaatagtcatcaatgaatgacacgaagtatcttgctcctcccagagataattctggt |
27877062 |
T |
|
| Q |
516 |
gactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgct |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27877063 |
gactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgct |
27877162 |
T |
|
| Q |
616 |
cacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgttctgacatatggcctagtctttgatg |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27877163 |
cacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccacaaggactttcaagccacgttcagacatatggcctagtctttgatg |
27877259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 75 - 277
Target Start/End: Original strand, 8481612 - 8481814
Alignment:
| Q |
75 |
ttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttgg |
174 |
Q |
| |
|
||||| |||||||||||||| |||||| |||| || ||| |||| || ||||| || |||||||| || ||||| | |||| |||| | || ||||||| |
|
|
| T |
8481612 |
ttccaaatctccatcggtgttttcaaaccaattgcagtttatggagatcgattgatcacataacatgccattttcgcagcttttgccaaaaaagacttgg |
8481711 |
T |
|
| Q |
175 |
ccattcccgctgttttcagcatagctcttgttctttctacgagagttctattcatccgctctgccacaccattctgctgaggtgtatgtgcaaccgtgaa |
274 |
Q |
| |
|
||||||| |||||| || ||||| |||||||| | |||| ||||||| |||||| |||||||| | |||||| || ||||| |||| || ||| ||||| |
|
|
| T |
8481712 |
ccattcctgctgttctctgcataactcttgttttatctaggagagttttattcaatcgctctgctataccattatgttgaggcgtatatggaactgtgaa |
8481811 |
T |
|
| Q |
275 |
ttg |
277 |
Q |
| |
|
||| |
|
|
| T |
8481812 |
ttg |
8481814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 645; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 16 - 712
Target Start/End: Original strand, 48699675 - 48700371
Alignment:
| Q |
16 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48699675 |
acatcacgtacacaggacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
48699774 |
T |
|
| Q |
116 |
tggtgagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
48699775 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctagg |
48699874 |
T |
|
| Q |
216 |
agagttctattcatccgctctgccacaccattctgctgaggtgtatgtgcaaccgtgaattgccttacaataccctcttgtttacaaaatgctagaaact |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48699875 |
agagttctattcatccgctctgccacaccattctgctgaggtgtatgtgcaaccgtgaattgccttacaataccctcttgtttacaaaatgctagaaact |
48699974 |
T |
|
| Q |
316 |
cgccatctacatattctcctccattgtctgtcctcaagcacttaattttcttcccagtttcaagctctatttgtgctttgaatgccttgaatactggaaa |
415 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48699975 |
cgccatctacatattctcctccattatctgtcctcaagcacttaattttcttcccagtttcaagctctatttgtgctttgaatgccttgaatactggaaa |
48700074 |
T |
|
| Q |
416 |
cacattcgacttcttcttgattgggtacacccataatcttctagaatagtcatcaatgaatgacacgaagtatcttgctcctccctgagatatttctggt |
515 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
48700075 |
cacatctgacttcttcttgattgggtacacccataatcttctggaatagtcatcaatgaatgacacgaagtatcttgctcctcccagagataattctggt |
48700174 |
T |
|
| Q |
516 |
gactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgct |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48700175 |
gactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgct |
48700274 |
T |
|
| Q |
616 |
cacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgttctgacatatggcctagtctttgatg |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
48700275 |
cacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccacaaggactttcaagccacgttcagacatatggcctagtctttgatg |
48700371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 16 - 712
Target Start/End: Original strand, 30948037 - 30948733
Alignment:
| Q |
16 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
115 |
Q |
| |
|
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
30948037 |
acatcacgtacacaggacaaccaaaaacatgcagagaagaataatctactggctttcctttccacatctccattggtgtcttcaaatcaatcgtcgttga |
30948136 |
T |
|
| Q |
116 |
tggtgagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
30948137 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccatttccgctgttttcagcatagctcttgttctttctagg |
30948236 |
T |
|
| Q |
216 |
agagttctattcatccgctctgccacaccattctgctgaggtgtatgtgcaaccgtgaattgccttacaataccctcttgtttacaaaatgctagaaact |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30948237 |
agagttctattcatccgctctgccacaccattctgctgaggtgtatgtgcaaccgtgaattgccttacaataccctcttgtttacaaaatgctagaaact |
30948336 |
T |
|
| Q |
316 |
cgccatctacatattctcctccattgtctgtcctcaagcacttaattttcttcccagtttcaagctctatttgtgctttgaatgccttgaatactggaaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30948337 |
cgccatctacatattctcctccattgtctgtcctcaagcacttaattttcttcccagtttcaagctctatttgtgctttgaatgccttgaatactggaaa |
30948436 |
T |
|
| Q |
416 |
cacattcgacttcttcttgattgggtacacccataatcttctagaatagtcatcaatgaatgacacgaagtatcttgctcctccctgagatatttctggt |
515 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||| |
|
|
| T |
30948437 |
cacatccgacttcttcttgattgggtacacccataatcttctagaatagtcatcaatgaatgacacgaagtatcttgctcctcccagagataattttggt |
30948536 |
T |
|
| Q |
516 |
gactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgct |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30948537 |
gactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgct |
30948636 |
T |
|
| Q |
616 |
cacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgttctgacatatggcctagtctttgatg |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30948637 |
cacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccacaaggactttcaagccacgttctgacatatggcctagtctttgatg |
30948733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 16 - 712
Target Start/End: Complemental strand, 42268366 - 42267670
Alignment:
| Q |
16 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
115 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42268366 |
acatcacatacacaggacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
42268267 |
T |
|
| Q |
116 |
tggtgagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
42268266 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctagg |
42268167 |
T |
|
| Q |
216 |
agagttctattcatccgctctgccacaccattctgctgaggtgtatgtgcaaccgtgaattgccttacaataccctcttgtttacaaaatgctagaaact |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42268166 |
agagttctattcatccgctctgccacaccattctgctgaggtgtatgtgcaaccgtgaattgccttacaataccctcttgtttacaaaatgctagaaact |
42268067 |
T |
|
| Q |
316 |
cgccatctacatattctcctccattgtctgtcctcaagcacttaattttcttcccagtttcaagctctatttgtgctttgaatgccttgaatactggaaa |
415 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42268066 |
cgccatctacatattctcctccattatctgtcctcaagcacttaattttcttcccagtttcaagctctatttgtgctttgaatgccttgaatactggaaa |
42267967 |
T |
|
| Q |
416 |
cacattcgacttcttcttgattgggtacacccataatcttctagaatagtcatcaatgaatgacacgaagtatcttgctcctccctgagatatttctggt |
515 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
42267966 |
cacatctgacttcttcttgattgggtacacccataatcttctggaatagtcatcaatgaatgacacgaagtatcttgctcctcccagagataattctggt |
42267867 |
T |
|
| Q |
516 |
gactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgct |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42267866 |
gactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgct |
42267767 |
T |
|
| Q |
616 |
cacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgttctgacatatggcctagtctttgatg |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42267766 |
cacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccacaaggactttcaagccacgttcagacatatggcctagtctttgatg |
42267670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 51 - 704
Target Start/End: Complemental strand, 2001305 - 2000660
Alignment:
| Q |
51 |
gaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttattacataacaggcggttttca |
150 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||| ||||| |||||| |||| || |||||||| || ||||| || || ||| |||| ||||||| |
|
|
| T |
2001305 |
gaagaataatcaggtggctttccgttccaaatctccattggtgttttcaaaccaattgcggttgatggagatcgattgatcacgtaataggcagttttca |
2001206 |
T |
|
| Q |
151 |
ccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacgagagttctattcatccgctctgccacaccattctg |
250 |
Q |
| |
|
| |||||||||||||| ||||| |||| ||| | |||| ||| ||| ||||||||||| | || ||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
2001205 |
cagcttctgcccagaaagacttagccactcctgttgttctcaacatggctcttgttctatataggagagttatattcatccgctctgctacaccattctg |
2001106 |
T |
|
| Q |
251 |
ctgaggtgtatgtgcaaccgtgaattgccttacaataccctcttgtttacaaaatgctagaaactcgccatctacatattctcctccattgtctgtcctc |
350 |
Q |
| |
|
||||| ||||||| ||| |||||||| ||| |||||| || ||||| || |||| || ||||||||||||||| ||||||||| ||| || |
|
|
| T |
2001105 |
ttgaggcgtatgtggaactgtgaattgtcttgtaataccttcatgtttgca--------gaaagtcaccatctacatattctgctccattgtttgttctt |
2001014 |
T |
|
| Q |
351 |
aagcacttaattttcttcccagtttcaagctctatttgtgctttgaatgccttgaatactggaaacacattcgacttcttcttgattgggtacacccata |
450 |
Q |
| |
|
|||||||| ||| | || | ||||||||| || | |||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2001013 |
aagcactttattcttttactagtttcaagttccacgtgtgctttgaattccttgaatactgtaaacacatttgacttcttcttgattgggtacacccata |
2000914 |
T |
|
| Q |
451 |
atcttctagaatagtcatcaatgaatgacacgaagtatcttgctcctccctgagatatttctggtgactcccacacatcagaatgtatcaagtctagtat |
550 |
Q |
| |
|
|||| ||||| | ||||||||| |||||||| || ||| ||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
2000913 |
atctcctagagtggtcatcaataaatgacacaaaatattttgctcctcccatggatatttgtggcgactcccacacatcagaatgtattaagtcaagtat |
2000814 |
T |
|
| Q |
551 |
gtgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgctcacagaatggtaaatttactgtcttgagcccgtga |
650 |
Q |
| |
|
|| ||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||| | ||||| | |||||||||||| | |
|
|
| T |
2000813 |
gtatttgcttctagtagttactatagaaaacttcaatctatgttgcttgcttgtcacacagtgctcacagaaagacaaattcattgtcttgagcccaggt |
2000714 |
T |
|
| Q |
651 |
aggagattgcgttccgcaaggacttttaagccacgttctgacatatggcctagt |
704 |
Q |
| |
|
|| ||||| |||||||||| |||| || ||| |||| ||||||||||||||| |
|
|
| T |
2000713 |
agaagattttgttccgcaagagctttcaaaccatgttccgacatatggcctagt |
2000660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 16 - 714
Target Start/End: Complemental strand, 827942 - 827244
Alignment:
| Q |
16 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
827942 |
acatcacgtacacaggacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
827843 |
T |
|
| Q |
116 |
tggtgagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
827842 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcacagaacgacttggccattcccgctgttttcagcataactcttgttctttctagg |
827743 |
T |
|
| Q |
216 |
agagttctattcatccgctctgccacaccattctgctgaggtgtatgtgcaaccgtgaattgccttacaataccctcttgtttacaaaatgctagaaact |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
827742 |
agagttctattcatccgctctgccacaccattctgctgaggtgtatgtgcaaccgtgaattgccttacaataccctcttgtttacaaaatgctagaaact |
827643 |
T |
|
| Q |
316 |
cgccatctacatattctcctccattgtctgtcctcaagcacttaattttcttcccagtttcaagctctatttgtgctttgaatgccttgaatactggaaa |
415 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
827642 |
cgccatctacatattctcctccattatctgtcctcaagcacttaattttcttcccagtttcaagctctatttgtgctttgaatgccttgaatactggaaa |
827543 |
T |
|
| Q |
416 |
cacattcgacttcttcttgattgggtacacccataatcttctagaatagtcatcaatgaatgacacgaagtatcttgctcctccctgagatatttctggt |
515 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
827542 |
cacatccgacttcttcttgattgggtacacccataatcttctggaatagtcatcaatgaatgacacgaagtatcttgctcctcccagagataattctggt |
827443 |
T |
|
| Q |
516 |
gactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgct |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
827442 |
gactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgct |
827343 |
T |
|
| Q |
616 |
cacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgttctgacatatggcctagtctttgatgtc |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
827342 |
cacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccacaaggactttcaagccacgttcagacatatggcctagtctttgatgtc |
827244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 641; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 16 - 712
Target Start/End: Original strand, 5821129 - 5821825
Alignment:
| Q |
16 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
115 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5821129 |
acatcacatacacaggacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
5821228 |
T |
|
| Q |
116 |
tggtgagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5821229 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctagg |
5821328 |
T |
|
| Q |
216 |
agagttctattcatccgctctgccacaccattctgctgaggtgtatgtgcaaccgtgaattgccttacaataccctcttgtttacaaaatgctagaaact |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5821329 |
agagttctattcatccgctctgccacaccattctgctgaggtgtatgtgcaaccgtgaattgccttacaataccctcttgtttacaaaatgctagaaact |
5821428 |
T |
|
| Q |
316 |
cgccatctacatattctcctccattgtctgtcctcaagcacttaattttcttcccagtttcaagctctatttgtgctttgaatgccttgaatactggaaa |
415 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5821429 |
cgccatctacatattctcctccattatctgtcctcaagcacttaattttcttcccagtttcaagctctatttgtgctttgaatgccttgaatactggaaa |
5821528 |
T |
|
| Q |
416 |
cacattcgacttcttcttgattgggtacacccataatcttctagaatagtcatcaatgaatgacacgaagtatcttgctcctccctgagatatttctggt |
515 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
5821529 |
cacatctgacttcttcttgattgggtacacccataatcttctggaatagtcatcaatgaatgacacgaagtatcttgctcctcccagagataattctggt |
5821628 |
T |
|
| Q |
516 |
gactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgct |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5821629 |
gactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgct |
5821728 |
T |
|
| Q |
616 |
cacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgttctgacatatggcctagtctttgatg |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5821729 |
cacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccacaaggactttcaagccacgttcagacatatggcctagtctttgatg |
5821825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 16 - 712
Target Start/End: Original strand, 2815117 - 2815813
Alignment:
| Q |
16 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
115 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||| |
|
|
| T |
2815117 |
acatcacatacacaggacaaccaaacacatgtagagaagaataatctactggctttcctttccacatctccataggagtcttcaaatcaatcaacgttga |
2815216 |
T |
|
| Q |
116 |
tggtgagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2815217 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctagg |
2815316 |
T |
|
| Q |
216 |
agagttctattcatccgctctgccacaccattctgctgaggtgtatgtgcaaccgtgaattgccttacaataccctcttgtttacaaaatgctagaaact |
315 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2815317 |
agagttatattcatccgctctgccacaccattctgctgaggtgtatgtgcaacagtgaattgccttacaataccctcttgtttacaaaatgctagaaact |
2815416 |
T |
|
| Q |
316 |
cgccatctacatattctcctccattgtctgtcctcaagcacttaattttcttcccagtttcaagctctatttgtgctttgaatgccttgaatactggaaa |
415 |
Q |
| |
|
|| |||||||||||| ||||||||| ||| |||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2815417 |
cgtcatctacatattatcctccattatctatcctcaagcacttaatctttttcccagtttcaagctctatttgtgcttttaatgccttgaatactggaaa |
2815516 |
T |
|
| Q |
416 |
cacattcgacttcttcttgattgggtacacccataatcttctagaatagtcatcaatgaatgacacgaagtatcttgctcctccctgagatatttctggt |
515 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
2815517 |
cacaactgacttcttcttgattggttacacccataatcttctggaatagtcatcaatgaatgacacgaagtatcttgctcctcccagagataattctggt |
2815616 |
T |
|
| Q |
516 |
gactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgct |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2815617 |
gactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgct |
2815716 |
T |
|
| Q |
616 |
cacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgttctgacatatggcctagtctttgatg |
712 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
2815717 |
cacaaaatggtaaatttactgaattgagcccgtgaaggagattgcgttccgcaaggactttcaagccacgttatgacatatggcctagtctttgatg |
2815813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 22 - 704
Target Start/End: Complemental strand, 42587408 - 42586726
Alignment:
| Q |
22 |
cgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtga |
121 |
Q |
| |
|
||||||||| ||| || ||||| |||| ||||||||||| ||||||||| ||||| |||||||| ||||| | |||| |||| || |||||||| || |
|
|
| T |
42587408 |
cgtacacagtacatccgaacacatgtaaggaagaataatcaggtggctttccgttccaaatctccattggtgtttacaaaccaattgcggttgatggaga |
42587309 |
T |
|
| Q |
122 |
gcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacgagagtt |
221 |
Q |
| |
|
||||| || || ||||||||||||||||| |||||||||||||| ||||| |||| | | |||||| ||| ||| ||||||||| | |||| ||||||| |
|
|
| T |
42587308 |
tcgattgatcacgtaacaggcggttttcacagcttctgcccagaaagacttagccactactgctgttctcaacatggctcttgttttatctaagagagtt |
42587209 |
T |
|
| Q |
222 |
ctattcatccgctctgccacaccattctgctgaggtgtatgtgcaaccgtgaattgccttacaataccctcttgtttacaaaatgctagaaactcgccat |
321 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| ||||||| ||| |||||||| ||| ||||||||| ||||| || |||| | ||| || |||| |
|
|
| T |
42587208 |
ctattcatccgctctgctacaccattctgttgaggcgtatgtggaactgtgaattgtcttgtaataccctcatgtttgcagaatgtcaaaaaatcaccat |
42587109 |
T |
|
| Q |
322 |
ctacatattctcctccattgtctgtcctcaagcacttaattttcttcccagtttcaagctctatttgtgctttgaatgccttgaatactggaaacacatt |
421 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| ||| | || ||||||||||| || | ||||| ||||||| |||||||||| | ||||||||| |
|
|
| T |
42587108 |
ctacatattctcctccattgtctgttcttaagcactttattcttttaccagtttcaagttccacttgtggtttgaattccttgaatacggtaaacacatt |
42587009 |
T |
|
| Q |
422 |
cgacttcttcttgattgggtacacccataatcttctagaatagtcatcaatgaatgacacgaagtatcttgctcctccctgagatatttctggtgactcc |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| | |||||||| |||||||| || ||| ||||||||||| ||||||| |||||||||| |
|
|
| T |
42587008 |
tgacttcttcttgattgggtacacccataatctcctagagtgatcatcaataaatgacacaaaatattttgctcctcccatggatatttgtggtgactcc |
42586909 |
T |
|
| Q |
522 |
cacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgctcacaga |
621 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42586908 |
cacacatcagaatgtatcaagtcaagtatgtatttgcttctagtagttactctggaaaacttcaatctatgttgcttgcttgtcacacagtgctcacaga |
42586809 |
T |
|
| Q |
622 |
atggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgttctgacatatggcctagt |
704 |
Q |
| |
|
| | ||||| | |||||||||||| | || ||||| |||||||||| |||| || |||||||| ||||||||||||||| |
|
|
| T |
42586808 |
aagacaaattcattgtcttgagcccaggtagaagattttgttccgcaagagctttcaaaccacgttccgacatatggcctagt |
42586726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 637; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 16 - 712
Target Start/End: Original strand, 9441946 - 9442642
Alignment:
| Q |
16 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
115 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9441946 |
acatcacatacacaggacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcaccgttga |
9442045 |
T |
|
| Q |
116 |
tggtgagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9442046 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctagg |
9442145 |
T |
|
| Q |
216 |
agagttctattcatccgctctgccacaccattctgctgaggtgtatgtgcaaccgtgaattgccttacaataccctcttgtttacaaaatgctagaaact |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9442146 |
agagttctattcatccgctctgccacaccattctgctgaggtgtatgtgcaaccgtgaattgccttacaataccctcttgtttacaaaatgctagaaact |
9442245 |
T |
|
| Q |
316 |
cgccatctacatattctcctccattgtctgtcctcaagcacttaattttcttcccagtttcaagctctatttgtgctttgaatgccttgaatactggaaa |
415 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9442246 |
cgccatctacatattctcctccattatctgtcctcaagcacttaattttcttcccagtttcaagctctatttgtgctttgaatgccttgaatactggaaa |
9442345 |
T |
|
| Q |
416 |
cacattcgacttcttcttgattgggtacacccataatcttctagaatagtcatcaatgaatgacacgaagtatcttgctcctccctgagatatttctggt |
515 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
9442346 |
cacatctgacttcttcttgattgggtacacccataatcttctggaatagtcatcaatgaatgacacgaagtatcttgctcctcccagagataattctggt |
9442445 |
T |
|
| Q |
516 |
gactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgct |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9442446 |
gactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgct |
9442545 |
T |
|
| Q |
616 |
cacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgttctgacatatggcctagtctttgatg |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9442546 |
cacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccacaaggactttcaagccacgttcagacatatggcctagtctttgatg |
9442642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 22 - 704
Target Start/End: Original strand, 24596348 - 24597030
Alignment:
| Q |
22 |
cgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtga |
121 |
Q |
| |
|
||||||||| ||| || ||||| |||| ||||||||||| ||||||||| ||||| |||||||| ||||| |||||| |||| || ||||||| || |
|
|
| T |
24596348 |
cgtacacagtacatccgaacacatgtaaggaagaataatcaggtggctttccgttccaaatctccattggtgttttcaaaccaattgcggttgatgtaga |
24596447 |
T |
|
| Q |
122 |
gcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacgagagtt |
221 |
Q |
| |
|
||||| || || ||| ||||||||||||| |||||||||||||| ||||| |||| | |||||| ||| ||| |||||| || | | || ||||||| |
|
|
| T |
24596448 |
tcgattgatcacgtaataggcggttttcacagcttctgcccagaaagacttagccactattgctgttctcaacatggctctttttttatttaagagagtt |
24596547 |
T |
|
| Q |
222 |
ctattcatccgctctgccacaccattctgctgaggtgtatgtgcaaccgtgaattgccttacaataccctcttgtttacaaaatgctagaaactcgccat |
321 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| ||||||| ||| |||||||| ||| ||||||||| ||||| || |||| | ||| || |||| |
|
|
| T |
24596548 |
ctattcatccgctctgctacaccattctgttgaggcgtatgtggaactgtgaattgtcttgtaataccctcatgtttgcagaatgtcaaaaaatcaccat |
24596647 |
T |
|
| Q |
322 |
ctacatattctcctccattgtctgtcctcaagcacttaattttcttcccagtttcaagctctatttgtgctttgaatgccttgaatactggaaacacatt |
421 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| ||| | || ||||||||||| || | ||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
24596648 |
ctacatattctcctccattgtctgttcttaagcactttattcttttaccagtttcaagttccacttgtgctttgaattccttgaatactgtaaacacatt |
24596747 |
T |
|
| Q |
422 |
cgacttcttcttgattgggtacacccataatcttctagaatagtcatcaatgaatgacacgaagtatcttgctcctccctgagatatttctggtgactcc |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| | |||||||| |||||||| || | | ||||||||||| ||||||| |||||||||| |
|
|
| T |
24596748 |
tgacttcttcttgattgggtacacccataatctcctagagtgatcatcaataaatgacacaaaatgttttgctcctcccatggatatttgtggtgactcc |
24596847 |
T |
|
| Q |
522 |
cacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgctcacaga |
621 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24596848 |
cacacatcagaatgtatcaagtcaagtatgtatttgcttctagtagttactctggaaaacttcaatctatgttgcttgcttgtcacacagtgctcacaga |
24596947 |
T |
|
| Q |
622 |
atggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgttctgacatatggcctagt |
704 |
Q |
| |
|
| | ||||| |||||||||||||| | || ||||| ||||| |||| |||| || |||||||| || |||||||||||| |
|
|
| T |
24596948 |
aagacaaattcactgtcttgagcccaggtagaagattttgttcctcaagagctttcaaaccacgttccgatatatggcctagt |
24597030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 633; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 16 - 712
Target Start/End: Complemental strand, 34354473 - 34353777
Alignment:
| Q |
16 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| |
|
|
| T |
34354473 |
acatcacgtacacaggacaaccaaacacatgtagagaagaataatctactggctttcctttccacatctccattggtgtcttcaaatcaattgtcgttga |
34354374 |
T |
|
| Q |
116 |
tggtgagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
34354373 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcctgctgttttcagcatagctcttgttctttctagg |
34354274 |
T |
|
| Q |
216 |
agagttctattcatccgctctgccacaccattctgctgaggtgtatgtgcaaccgtgaattgccttacaataccctcttgtttacaaaatgctagaaact |
315 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34354273 |
agagttctattcatccgctctgccgcaccattctgctgaggtgtatgtgcaaccgtgaattgccttacaataccctcttgtttacaaaatgctagaaact |
34354174 |
T |
|
| Q |
316 |
cgccatctacatattctcctccattgtctgtcctcaagcacttaattttcttcccagtttcaagctctatttgtgctttgaatgccttgaatactggaaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34354173 |
cgccatctacatattctcctccattgtctgtcctcaagcacttaattttcttcccagtttcaagctctatttgtgctttgaatgccttgaatactggaaa |
34354074 |
T |
|
| Q |
416 |
cacattcgacttcttcttgattgggtacacccataatcttctagaatagtcatcaatgaatgacacgaagtatcttgctcctccctgagatatttctggt |
515 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34354073 |
cacatccgacttcttcttgattgggtacacccataatcttctggaatagtcatcaatgaatgacacgaagtatcttgctcctcccagagatatttctggt |
34353974 |
T |
|
| Q |
516 |
gactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgct |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34353973 |
gactcccacacatcagaatgtatcaagtctagtatgtgtttgcttttagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgct |
34353874 |
T |
|
| Q |
616 |
cacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgttctgacatatggcctagtctttgatg |
712 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34353873 |
cacaaaatggtaaatttactgccttgagcccgtgaaggagattgcgttcagcaaggactttcaagccacgttctgacatatggcctagtctttgatg |
34353777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 16 - 712
Target Start/End: Complemental strand, 41720873 - 41720177
Alignment:
| Q |
16 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
115 |
Q |
| |
|
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41720873 |
acatcacgtacacaggacaaccaaaaacatgcagagaagaataatctactggctttcctttccacatctccattggtgtcttcaaatcaatcgccgttga |
41720774 |
T |
|
| Q |
116 |
tggtgagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
41720773 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctagg |
41720674 |
T |
|
| Q |
216 |
agagttctattcatccgctctgccacaccattctgctgaggtgtatgtgcaaccgtgaattgccttacaataccctcttgtttacaaaatgctagaaact |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41720673 |
agagttctattcatccgctctgccacaccattctgctgaggtgtatgtgcaaccgtgaattgccttacaataccctcttgtttacaaaatgctagaaact |
41720574 |
T |
|
| Q |
316 |
cgccatctacatattctcctccattgtctgtcctcaagcacttaattttcttcccagtttcaagctctatttgtgctttgaatgccttgaatactggaaa |
415 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41720573 |
cgccatctatatattctcctccattatctgtcctcaagcacttaattttcttcctagtttcaagctctatttgtgctttgaatgccttgaatactggaaa |
41720474 |
T |
|
| Q |
416 |
cacattcgacttcttcttgattgggtacacccataatcttctagaatagtcatcaatgaatgacacgaagtatcttgctcctccctgagatatttctggt |
515 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |
|
|
| T |
41720473 |
cacatccgacttcttcttgattgggtacacccataatcttctggaatagtcatcaatgaatgacacaaaatatcttgctcctcctagagatatttctggt |
41720374 |
T |
|
| Q |
516 |
gactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgct |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41720373 |
gactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgct |
41720274 |
T |
|
| Q |
616 |
cacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgttctgacatatggcctagtctttgatg |
712 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41720273 |
cacaaaatggtaaatttactgccttgagcccgtgaaggagattgcgttccgcaaggactttcaagccacgttctgacatatggcctagtctttgatg |
41720177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 8e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 517 - 669
Target Start/End: Original strand, 8136818 - 8136971
Alignment:
| Q |
517 |
actcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgctc |
616 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8136818 |
actcccacacatcataatggatcaagtctagtatatgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgctc |
8136917 |
T |
|
| Q |
617 |
acagaatggtaaatttactgtcttgagcccgtg-aaggagattgcgttccgcaa |
669 |
Q |
| |
|
|||||||||||| ||||| ||||| |||| ||| |||||||||||||||||||| |
|
|
| T |
8136918 |
acagaatggtaagtttaccgtcttcagcctgtgaaaggagattgcgttccgcaa |
8136971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 322 - 522
Target Start/End: Original strand, 8134716 - 8134907
Alignment:
| Q |
322 |
ctacatattctcctccattgtctgtcctcaagcacttaattttcttcccagtttcaagctctatttgtgctttgaatgccttgaatactggaaacacatt |
421 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| || ||||| ||| |||||||||||||||| |||| |||||||| |
|
|
| T |
8134716 |
ctacatattctcctccattatctgtcctcaagcacttaattttcttctcaatttcacgctttatttgtgctttgaat---------actgaaaacacatc |
8134806 |
T |
|
| Q |
422 |
cgacttcttcttgattgggtacacccataatcttctagaatagtcatcaatgaatgacacgaagtatcttgctcctccctgagatatttctggtgactcc |
521 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||| ||||| |||||||| |||||| |||||||||||||||||||| |
|
|
| T |
8134807 |
tgacttcttcttaattgggtacacccataatcttctggaatagtaatcaatgaatgagacgaaatatcttgcccctcccagagatatttctggtgactcc |
8134906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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