View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850_low_71 (Length: 253)

Name: NF7850_low_71
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850_low_71
NF7850_low_71
[»] chr6 (20 HSPs)
chr6 (1-162)||(26950170-26950332)
chr6 (5-104)||(31288791-31288890)
chr6 (5-88)||(26975453-26975536)
chr6 (5-88)||(26636148-26636231)
chr6 (5-88)||(26742114-26742197)
chr6 (5-88)||(25074372-25074455)
chr6 (5-82)||(26959634-26959711)
chr6 (5-88)||(25074191-25074274)
chr6 (162-238)||(26959437-26959513)
chr6 (162-228)||(26635971-26636037)
chr6 (162-228)||(26741937-26742003)
chr6 (162-227)||(26975334-26975399)
chr6 (162-238)||(26949932-26950008)
chr6 (7-82)||(27664804-27664879)
chr6 (163-227)||(26848942-26849006)
chr6 (1-72)||(24716103-24716174)
chr6 (165-228)||(26937387-26937450)
chr6 (187-238)||(27214691-27214742)
chr6 (187-238)||(27234486-27234537)
chr6 (173-238)||(25071930-25071995)
[»] chr2 (2 HSPs)
chr2 (5-89)||(17992812-17992896)
chr2 (173-238)||(17993535-17993600)


Alignment Details
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 26950332 - 26950170
Alignment:
Q  1 atcgcgttcatattcatttctgtccaatcattaatatttaaataaatgcatcagaataactatcacatatatgtattgatatgtaataatgacactgata 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||| ||||||||| |||||||||||||||||    
T  26950332 atcgcgttcatattcatttctgtccaatcataaatatttaaataaatgcatcagaataactactacatatatatattgatatataataatgacactgata 26950233  T
Q  101 aaatcgcgttcatattgattttggtccaattataata-tttccattcaaattgttacagcata 162  Q
    |||||| ||||||||||||||  || ||||||||||| |||  ||||||||||||||| ||||    
T  26950232 aaatcgtgttcatattgatttatgttcaattataatatttttaattcaaattgttacaacata 26950170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 31288890 - 31288791
Alignment:
Q  5 cgttcatattcatttctgtccaatcattaatatttaaataaatgcatcagaataactatcacatatatgtattgatatgtaataatgacactgataaaat 104  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||||| |||||| ||||    
T  31288890 cgttcatattcatttatgtccaatcataaatatttaaataaatgcatcagaataactatcacaaatatgtatttacatataataatgagactgatgaaat 31288791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 26975536 - 26975453
Alignment:
Q  5 cgttcatattcatttctgtccaatcattaatatttaaataaatgcatcagaataactatcacatatatgtattgatatgtaata 88  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||| |||||| |||||    
T  26975536 cgttcatattcatttctgtccaatcataaatatttaaatacatgcatcagaataacaatcacatatatgtactgatatataata 26975453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 26636231 - 26636148
Alignment:
Q  5 cgttcatattcatttctgtccaatcattaatatttaaataaatgcatcagaataactatcacatatatgtattgatatgtaata 88  Q
    ||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| ||||| ||||||||||||||| |||||    
T  26636231 cgttcatattcatttctgtccaatcatgaatatttaaatacatgtatcagaataacaatcacgtatatgtattgatatataata 26636148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 26742197 - 26742114
Alignment:
Q  5 cgttcatattcatttctgtccaatcattaatatttaaataaatgcatcagaataactatcacatatatgtattgatatgtaata 88  Q
    ||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| ||||| ||||||||||||||| |||||    
T  26742197 cgttcatattcatttctgtccaatcatgaatatttaaatacatgtatcagaataacaatcacgtatatgtattgatatataata 26742114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 25074455 - 25074372
Alignment:
Q  5 cgttcatattcatttctgtccaatcattaatatttaaataaatgcatcagaataactatcacatatatgtattgatatgtaata 88  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||| |||||||  ||||||||||||| ||||||| |||||    
T  25074455 cgttcatattcatttctgtccaatcataaatatttaaatacatgcattagaataataatcacatatatgtcttgatatataata 25074372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 26959711 - 26959634
Alignment:
Q  5 cgttcatattcatttctgtccaatcattaatatttaaataaatgcatcagaataactatcacatatatgtattgatat 82  Q
    |||||||| |||||||||||||||||| |||||||||||| ||| || |||||||| |||||||||||||||||||||    
T  26959711 cgttcatactcatttctgtccaatcataaatatttaaatacatgtattagaataacaatcacatatatgtattgatat 26959634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 25074274 - 25074191
Alignment:
Q  5 cgttcatattcatttctgtccaatcattaatatttaaataaatgcatcagaataactatcacatatatgtattgatatgtaata 88  Q
    ||||||||||||||| |||||||||||  |||||||| || | |||| |||||| | |||||||||||||||||||||||||||    
T  25074274 cgttcatattcatttatgtccaatcatagatatttaactatacgcattagaatagcaatcacatatatgtattgatatgtaata 25074191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 26959513 - 26959437
Alignment:
Q  162 agggtacccaagattgaaatggtgtccagctaagttagcagccttgtttagagctatcttccatttctccaaccgct 238  Q
    |||||||||||||||||||||||| |||| |||||||||||| | ||| |||||| |||||||||||  ||||||||    
T  26959513 agggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccgct 26959437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 26636037 - 26635971
Alignment:
Q  162 agggtacccaagattgaaatggtgtccagctaagttagcagccttgtttagagctatcttccatttc 228  Q
    |||||||||||||||||||||||| |||| |||||||||||| | ||| |||||| |||||||||||    
T  26636037 agggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttc 26635971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 26742003 - 26741937
Alignment:
Q  162 agggtacccaagattgaaatggtgtccagctaagttagcagccttgtttagagctatcttccatttc 228  Q
    |||||||||||||||||||||||| |||| |||||||||||| | ||| |||||| |||||||||||    
T  26742003 agggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttc 26741937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 26975399 - 26975334
Alignment:
Q  162 agggtacccaagattgaaatggtgtccagctaagttagcagccttgtttagagctatcttccattt 227  Q
    |||||||||||||||||||||||| |||| |||||||||||| | ||| |||||| ||||||||||    
T  26975399 agggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccattt 26975334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 26950008 - 26949932
Alignment:
Q  162 agggtacccaagattgaaatggtgtccagctaagttagcagccttgtttagagctatcttccatttctccaaccgct 238  Q
    |||||||||||||||||||||||  |||| ||||| |||| | ||||| ||||||||||||||||||  ||||||||    
T  26950008 agggtacccaagattgaaatggtagccagataagtcagcaactttgttcagagctatcttccatttcagcaaccgct 26949932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 27664804 - 27664879
Alignment:
Q  7 ttcatattcatttctgtccaatcattaatatttaaataaatgcatcagaataactatcacatatatgtattgatat 82  Q
    |||||||| ||||||||||||||||  ||||||||||| ||| || |||||||| |||||| ||||||||| ||||    
T  27664804 ttcatatttatttctgtccaatcatacatatttaaatagatgtattagaataacaatcacacatatgtattaatat 27664879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 26849006 - 26848942
Alignment:
Q  163 gggtacccaagattgaaatggtgtccagctaagttagcagccttgtttagagctatcttccattt 227  Q
    |||||||||| |||||||||||| |||| |||||||||||| | ||| |||||| ||||||||||    
T  26849006 gggtacccaaaattgaaatggtggccagataagttagcagcatggttaagagctttcttccattt 26848942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 24716174 - 24716103
Alignment:
Q  1 atcgcgttcatattcatttctgtccaatcattaatatttaaataaatgcatcagaataactatcacatatat 72  Q
    ||||| ||||| ||||||||||||||||||| ||| ||  ||||  |||||||||||||| |||||||||||    
T  24716174 atcgccttcatgttcatttctgtccaatcataaatgttataatacgtgcatcagaataacaatcacatatat 24716103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 228
Target Start/End: Complemental strand, 26937450 - 26937387
Alignment:
Q  165 gtacccaagattgaaatggtgtccagctaagttagcagccttgtttagagctatcttccatttc 228  Q
    ||||||||||||||||||||| ||||  ||||| || || | ||| ||||||||||||||||||    
T  26937450 gtacccaagattgaaatggtggccagacaagtttgccgcttggttaagagctatcttccatttc 26937387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 27214742 - 27214691
Alignment:
Q  187 ccagctaagttagcagccttgtttagagctatcttccatttctccaaccgct 238  Q
    |||| |||||||||||| | ||| ||||||||||||||||||| ||||||||    
T  27214742 ccagataagttagcagcttggttaagagctatcttccatttctgcaaccgct 27214691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 27234486 - 27234537
Alignment:
Q  187 ccagctaagttagcagccttgtttagagctatcttccatttctccaaccgct 238  Q
    |||| |||||||||||| | ||| ||||||||||||||||||| ||||||||    
T  27234486 ccagataagttagcagcttggttaagagctatcttccatttctgcaaccgct 27234537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 25071995 - 25071930
Alignment:
Q  173 gattgaaatggtgtccagctaagttagcagccttgtttagagctatcttccatttctccaaccgct 238  Q
    |||||||||| ||||||| |||||||||||| | ||| |||||| |||||||| ||  ||||||||    
T  25071995 gattgaaatgatgtccagataagttagcagcttcgttaagagctttcttccatgtcagcaaccgct 25071930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 17992812 - 17992896
Alignment:
Q  5 cgttcatattcatttctgtccaatcattaatatttaaataaatgcatcagaataactatcacatatatgtattgatatgtaataa 89  Q
    ||||||||||||||||||||||||||  |||||||||||| ||||||||||||||  |||||||||| || ||||||||||||||    
T  17992812 cgttcatattcatttctgtccaatcaaaaatatttaaatacatgcatcagaataaaaatcacatatacgtcttgatatgtaataa 17992896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 17993535 - 17993600
Alignment:
Q  173 gattgaaatggtgtccagctaagttagcagccttgtttagagctatcttccatttctccaaccgct 238  Q
    ||||||||||||| |||| |||||||||||| | ||| |||||| |||||||||||  ||||||||    
T  17993535 gattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcaacaaccgct 17993600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University