View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850_low_72 (Length: 248)
Name: NF7850_low_72
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 16360173 - 16360398
Alignment:
| Q |
13 |
ctgtggcagtgagtaagcgcaaatccacaaaggggttttatcaaaattggagttttatatatgtaagtgtctgcctatttcatttgaatgtataatatct |
112 |
Q |
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| T |
16360173 |
ctgtggcagtgagtaagcgcaaatccacaaaggggttttatcaaaattggatttttatatatgtaagtgtctgcctatttcatttgaatgtataatatct |
16360272 |
T |
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| Q |
113 |
tccaattttgtaactttgttctgataagatgtcgtgaaaatttctgattgcagacttttaatttgttgtgatggctaacagtaacgatgaatagattctg |
212 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
16360273 |
tccatttttgtaactttgttctgataagatgtcgtgaaaatttctgattgcagacttttaatttgttgtgatggctaacagtaacgatgaacaaattctg |
16360372 |
T |
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| Q |
213 |
agtagcagtgaaaatacctcacaggt |
238 |
Q |
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| T |
16360373 |
agtagcagtgaaaatacctcacaggt |
16360398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 43621431 - 43621205
Alignment:
| Q |
13 |
ctgtggcagtgagtaagcgcaaatccacaaaggggtttt-atcaaaattggagttttatatatgtaagtgtctgcctatttcatttgaatgtataatatc |
111 |
Q |
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| T |
43621431 |
ctgtggcagtgagtaagcgcaaatccacaaaggggtttttatcaaaattggagttttatatacgtaagtgtctgcctatttcatttgaatgtataatatc |
43621332 |
T |
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| Q |
112 |
ttccaattttgtaactttgttctgataagatgtcgtgaaaatttctgattgcagacttttaatttgttgtgatggctaacagtaacgatgaatagattct |
211 |
Q |
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| T |
43621331 |
tttcattttggtaactttgttctgataagatgttgtgaaattttttgaatgcagacttttaatttgttgtgatggctaacagtaacaatgaacagattat |
43621232 |
T |
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| Q |
212 |
gagtagcagtgaaaatacctcacaggt |
238 |
Q |
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| T |
43621231 |
gagtagcagtgaaaatacctcacaggt |
43621205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 34081469 - 34081386
Alignment:
| Q |
14 |
tgtggcagtgagtaagcgcaaatccacaaaggggttttatcaaaattggagttttatatatgtaagtgtctgcctatttcatttg |
98 |
Q |
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| T |
34081469 |
tgtggcagggagtaa-cgcaaatccacaaaggggttttatcaaaattggagttttatatatgtaagtgtctgcctatttcatttg |
34081386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 12720347 - 12720268
Alignment:
| Q |
14 |
tgtggcagtgagtaagcgcaaatccacaaaggggttttatcaaaattggagttttatatatgtaagtgtctgcctatttca |
94 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12720347 |
tgtggcagggagtaa-cgcaaatccacaaaggggttttatcaaaattggagttttatatatgtaagtgtctgcctatttca |
12720268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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