View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850_low_73 (Length: 247)
Name: NF7850_low_73
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_low_73 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 50879540 - 50879316
Alignment:
| Q |
1 |
aattgaataaaagaaataagttaagggatcaattaagccaagacttcttaaagccagctaaatgttatctaagcacctatgtcgtactcggtctaagttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50879540 |
aattgaataaaagaaataagttaagggatcaattaagccaagacttcttaaagccagctaaatgttatctaagcacctatgtcgtactcggtct------ |
50879447 |
T |
|
| Q |
101 |
cttctaagttttaattcaagttgcgcattaagcaagtcaacacttcttcattagacattggcgatgaatggtctaggaacatgccacagacaggaaagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50879446 |
cttctaagttttaattcaagttgcgcattaagcaagtcaacacttcttcattagacattggcgatgaatggtctaggaacatgccacagacaggaaagtg |
50879347 |
T |
|
| Q |
201 |
cagtaaacatgaaacaagattcaatgtgatg |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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|
| T |
50879346 |
cagtaaacatgaaacaagattcaatgtgatg |
50879316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 2232648 - 2232619
Alignment:
| Q |
1 |
aattgaataaaagaaataagttaagggatc |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
2232648 |
aattgaataaaagaaataagttaagggatc |
2232619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 17116248 - 17116219
Alignment:
| Q |
1 |
aattgaataaaagaaataagttaagggatc |
30 |
Q |
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|
|||||||||||||||||||||||||||||| |
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|
| T |
17116248 |
aattgaataaaagaaataagttaagggatc |
17116219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 17742365 - 17742394
Alignment:
| Q |
1 |
aattgaataaaagaaataagttaagggatc |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
17742365 |
aattgaataaaagaaataagttaagggatc |
17742394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 19043685 - 19043714
Alignment:
| Q |
1 |
aattgaataaaagaaataagttaagggatc |
30 |
Q |
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|
|||||||||||||||||||||||||||||| |
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|
| T |
19043685 |
aattgaataaaagaaataagttaagggatc |
19043714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 52525371 - 52525399
Alignment:
| Q |
1 |
aattgaataaaagaaataagttaagggat |
29 |
Q |
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|
||||||||||||||||||||||||||||| |
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|
| T |
52525371 |
aattgaataaaagaaataagttaagggat |
52525399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 10802935 - 10802906
Alignment:
| Q |
1 |
aattgaataaaagaaataagttaagggatc |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
10802935 |
aattgaataaaagaaataagttaagggatc |
10802906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 5488939 - 5488968
Alignment:
| Q |
1 |
aattgaataaaagaaataagttaagggatc |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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|
| T |
5488939 |
aattgaataaaagaaataagttaagggatc |
5488968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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