View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850_low_76 (Length: 245)
Name: NF7850_low_76
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_low_76 |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 41225152 - 41225317
Alignment:
| Q |
15 |
tatcacatgcatttatgtgtacataaactcaaataagttcatctcattataccctcaatctaattcatgttttt-gggttattttattttaaattctaat |
113 |
Q |
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| T |
41225152 |
tatcacatgcatttatgtgtacataaactcaaataagttcatctcattagaccctcaatctaactcatgtttttggggttattgtattttaaattctaat |
41225251 |
T |
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| Q |
114 |
tataatcattagagttag--------ttttcttaacatagggtgaattgatattcttgatgtttac |
171 |
Q |
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| T |
41225252 |
tataatcattagagttagtttgaaatttttcttaacatagggtgaattgatattcttgatgtttac |
41225317 |
T |
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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 41225342 - 41225375
Alignment:
| Q |
196 |
aggttcctattgactctgatatcatggaatctcc |
229 |
Q |
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| T |
41225342 |
aggttcctattgactctgatatcatggaatctcc |
41225375 |
T |
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