View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850_low_79 (Length: 240)

Name: NF7850_low_79
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850_low_79
NF7850_low_79
[»] chr8 (2 HSPs)
chr8 (151-240)||(35074146-35074235)
chr8 (18-105)||(35074281-35074368)
[»] chr3 (1 HSPs)
chr3 (31-89)||(38158955-38159013)


Alignment Details
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 35074235 - 35074146
Alignment:
Q  151 ggaatcaatcacacacaatgcaacaagaatgaagcatatgttataatgtaacacttaaaattagataagacagcaaaggtgaacaacatt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35074235 ggaatcaatcacacacaatgcaacaagaatgaagcatatgttataatgtaacacttaaaattagataagacagcaaaggtgaacaacatt 35074146  T

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Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 35074368 - 35074281
Alignment:
Q  18 ctttcgacctgtgatcagttccatcaaaactactccaaatgcgtaaacatccactttggttgtcactcttccggtagctacaagaaac 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35074368 ctttcgacctgtgatcagttccatcaaaactactccaaatgcgtaaacatccactttggttgtcactcttccagtagctacaagaaac 35074281  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 38158955 - 38159013
Alignment:
Q  31 atcagttccatcaaaactactccaaatgcgtaaacatccactttggttgtcactcttcc 89  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  38158955 atcagttccatcagaactactccaaatgcgtaaacatctactttggttgtcactcttcc 38159013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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