View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850_low_80 (Length: 238)
Name: NF7850_low_80
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_low_80 |
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| [»] chr2 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0221 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 15050444 - 15050225
Alignment:
| Q |
19 |
gcaattatctcctctttcccgctaatcaaagaatctgattgaaattcaatctcaattgttgtgatatagggtcatcgttctctttttcacgctcttgtct |
118 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
15050444 |
gcaattatctcatcttttccgctaatcaaagaatctgattgacattcaatctcaattgttgtgatataaggtcgtcgttctctttttcacgctcttgtct |
15050345 |
T |
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| Q |
119 |
ctttgaatcaggtctcatattcattctcatgtaactctgtttttgcttaccatcatagcttccattgattcataacactaaagcagaatatttcagtttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
15050344 |
ctttgaatcaggtctcatattcattctcatgtaactctgtttttgcttaccatcatagcttccattgattcatagcactaaagcagagtatttcagtttt |
15050245 |
T |
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| Q |
219 |
aatttatctacaagtaagta |
238 |
Q |
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|||||| ||||||||||||| |
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| T |
15050244 |
aatttacctacaagtaagta |
15050225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 214
Target Start/End: Complemental strand, 15231171 - 15231062
Alignment:
| Q |
102 |
ttttcacgctcttgtctctttgaatcaggtctcatattcattctcatgtaactctgtttttgcttaccatcatagcttccattgattcataacactaaag |
201 |
Q |
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|||||||||||||| || | ||| ||||||||||||||||| |||| ||||||||| ||||||| |||| |||||||||||||||||| |||||||| |
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| T |
15231171 |
ttttcacgctcttgcct-tgtgagtcaggtctcatattcatcctcac--aactctgttcttgcttagaatcacagcttccattgattcatagcactaaag |
15231075 |
T |
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| Q |
202 |
cagaatatttcag |
214 |
Q |
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|||| |||||||| |
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| T |
15231074 |
cagagtatttcag |
15231062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 20789890 - 20789673
Alignment:
| Q |
19 |
gcaattatctcctctttcccgctaatcaaagaatctgattgaaattcaatctcaattgttgtgatatagggtcatcgttctctttttcacgctcttgtct |
118 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||| |||| |
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| T |
20789890 |
gcaattatctcctcttttccgctaatcaaagaatctgattgacattcaatctcaattgttgtgatatagggtcgtcgctctctttttcacgctc--gtct |
20789793 |
T |
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| Q |
119 |
ctttgaatcaggtctcatattcattctcatgtaactctgtttttgcttaccatcatagcttccattgattcataacactaaagcagaatatttcagtttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| |
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| T |
20789792 |
ctttgaatcaggtctcatattcattctcatgtaactctgtttttgcttaccatcatagcttccattgattcatagcactcaagcagagtatttcagtttt |
20789693 |
T |
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| Q |
219 |
aatttatctacaagtaagta |
238 |
Q |
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|||||| ||||||||||||| |
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| T |
20789692 |
aatttacctacaagtaagta |
20789673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 24187501 - 24187410
Alignment:
| Q |
131 |
tctcatattcattctcatgtaactctgtttttgcttaccatcatagcttccattgattcataacactaaagcagaatatttcagttttaattt |
223 |
Q |
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|||||||||||| |||| ||||||||||| ||||||| ||||||||||||||||||||||| | |||||||||| |||||||| ||| |||| |
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| T |
24187501 |
tctcatattcatcctcacataactctgtttctgcttactatcatagcttccattgattcatagc-ctaaagcagagtatttcagatttcattt |
24187410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 238
Target Start/End: Complemental strand, 1183661 - 1183447
Alignment:
| Q |
28 |
tcctctttcccgctaatcaaagaatctgattgaaattcaatctcaattgttgtgatatagggtcatcgt-----tctctttttcacgctcttgtctcttt |
122 |
Q |
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||||||||||| | ||||||||| |||||||||||||||| ||| ||||||||| |||| ||| |||| |||| |||||| ||||||| || | | |
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| T |
1183661 |
tcctctttcccacgaatcaaagactctgattgaaattcaacttcatttgttgtgaaatagtgtcgtcgtcgatttctcgttttcatgctcttgcct-tgt |
1183563 |
T |
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| Q |
123 |
gaatcaggtctcatattcattctcatgtaactctgtttttgcttaccatcatagcttccattgattcataacactaaagcagaatatttcagttttaatt |
222 |
Q |
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||||||| | | |||||||| |||| ||||||||||| |||||| ||||| | |||||||||||||||| |||||||||| | |||||||||||||||| |
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| T |
1183562 |
gaatcagattttatattcatcctcacataactctgtttctgcttatcatcacaacttccattgattcatagcactaaagcatagtatttcagttttaatt |
1183463 |
T |
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| Q |
223 |
tatctacaagtaagta |
238 |
Q |
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|| |||||||||||| |
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| T |
1183462 |
tacttacaagtaagta |
1183447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 49959383 - 49959608
Alignment:
| Q |
18 |
cgcaattatctcctctttcccgctaatcaaagaatctgattgaaattcaatctcaattgttgtgatatagggtc---atcg--ttctctttttcacgctc |
112 |
Q |
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||||||| | ||||||||||| | || |||||| |||| |||| |||||| || |||||||||| |||| ||| |||| ||||| |||||| |||| |
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| T |
49959383 |
cgcaattgtttcctctttcccacgaaacaaagactctggttgatattcaacttctattgttgtgaaatagtgtcgtcatcgatttctcgttttcatgctc |
49959482 |
T |
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| Q |
113 |
ttgtctctttgaatcaggtctcatattcattctcatgtaactctgtttttgcttaccatcatagcttccattgattcataacactaaagcagaatatttc |
212 |
Q |
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||| |||| | |||||| | |||||| ||| |||| ||||||||||| |||||| ||||| | |||||||||||||||| |||||||||||| |||||| |
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| T |
49959483 |
ttgcctctgtaaatcagatttcatatgcatcctcacataactctgtttctgcttatcatcacaacttccattgattcatagcactaaagcagagtatttc |
49959582 |
T |
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| Q |
213 |
agttttaatttatctacaagtaagta |
238 |
Q |
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|||||||||||| |||||||||||| |
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| T |
49959583 |
agttttaatttacttacaagtaagta |
49959608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 413097 - 413006
Alignment:
| Q |
131 |
tctcatattcattctcatgtaactctgtttttgcttaccatcatagcttccattgattcataacactaaagcagaatatttcagttttaattt |
223 |
Q |
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|||||||||||| |||| ||||||||||| ||||||| ||||||||||||||||||||||| | |||||||||| |||||||| ||| |||| |
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| T |
413097 |
tctcatattcatcctcacataactctgtttctgcttactatcatagcttccattgattcatagc-ctaaagcagagtatttcagatttcattt |
413006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 223
Target Start/End: Original strand, 24342403 - 24342494
Alignment:
| Q |
131 |
tctcatattcattctcatgtaactctgtttttgcttaccatcatagcttccattgattcataacactaaagcagaatatttcagttttaattt |
223 |
Q |
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|||||||||||| |||| ||||||||||| ||||||| ||||||||||||||||||||||| | |||||||||| |||||||| ||| |||| |
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| T |
24342403 |
tctcatattcatcctcacataactctgtttctgcttactatcatagcttccattgattcatagc-ctaaagcagagtatttcagatttcattt |
24342494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 24354800 - 24354872
Alignment:
| Q |
150 |
taactctgtttttgcttaccatcatagcttccattgattcataacactaaagcagaatatttcagttttaattt |
223 |
Q |
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||||| ||||| ||||||| ||||||||||||||||||||||| | |||||||||| |||||||| ||| |||| |
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| T |
24354800 |
taactatgtttctgcttactatcatagcttccattgattcatagc-ctaaagcagagtatttcagatttcattt |
24354872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 10377 - 10434
Alignment:
| Q |
166 |
taccatcatagcttccattgattcataacactaaagcagaatatttcagttttaattt |
223 |
Q |
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|||||| |||||||||||||||||||| || ||||||||| ||| |||||| |||||| |
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| T |
10377 |
taccattatagcttccattgattcatagcattaaagcagagtatatcagttataattt |
10434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 12102476 - 12102406
Alignment:
| Q |
124 |
aatcaggtctcatattcattctcatgtaactctgtttttgcttaccatcatagcttccattgattcataac |
194 |
Q |
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||||||||||| |||||| |||| ||||||||||| | | || ||||| |||||||||||||||||||| |
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| T |
12102476 |
aatcaggtctctgattcatcctcacataactctgtttcttcctatcatcacagcttccattgattcataac |
12102406 |
T |
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