View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850_low_84 (Length: 219)

Name: NF7850_low_84
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850_low_84
NF7850_low_84
[»] chr1 (2 HSPs)
chr1 (1-219)||(49673446-49673664)
chr1 (1-219)||(49723350-49723569)


Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 49673664 - 49673446
Alignment:
Q  1 aggcttggcattttttggatagcaaatacttccgctgtgtttcatctgagaccgtgatgatattaccttccacgtatgtaactattaaagaatgttagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||  |||| |||    
T  49673664 aggcttggcattttttggatagcaaatacttccgctgtgttttatctgagaccgtgatggtattaccttccacgtatgtaactattaaaggctgtttgga 49673565  T
Q  101 tggcatctttcttagttggatgcttttgggagcagatgtannnnnnngatcacaaccacttatggccagtatgccacagtgagggtattgtgtgactgtg 200  Q
    ||||||||||| ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49673564 tggcatctttcctagttggatgcttttgggagcagatgtattttttttatcacaaccacttatggccagtatgccacagtgagggtattgtgtgactgtg 49673465  T
Q  201 aaagggaaggtaatttggc 219  Q
    |||||||||||||||||||    
T  49673464 aaagggaaggtaatttggc 49673446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 49723569 - 49723350
Alignment:
Q  1 aggcttggcattttttggatagcaaatacttccgctgtgtttcatctgagaccgtgatgatattaccttccacgtatgtaactattaaagaatgttagga 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||    
T  49723569 aggcttggcattttttggatagcaaatacttctgctgtgtttcatctgagaccgtgatggtattaccttccacgtatgtaactattaaagactgtttgga 49723470  T
Q  101 tggcatctttcttagttggatgcttttgggagcagatgta-nnnnnnngatcacaaccacttatggccagtatgccacagtgagggtattgtgtgactgt 199  Q
    ||||||||||| |||||||||||| |||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49723469 tggcatctttcctagttggatgctattgggagcagatgtattttttttgatcacaaccacttatggccagtatgccacagtgagggtattgtgtgactgt 49723370  T
Q  200 gaaagggaaggtaatttggc 219  Q
    ||||||||||||||||||||    
T  49723369 gaaagggaaggtaatttggc 49723350  T

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