View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7850_low_86 (Length: 214)
Name: NF7850_low_86
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_low_86 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 21 - 208
Target Start/End: Complemental strand, 52982938 - 52982751
Alignment:
| Q |
21 |
ctcgagacatattggttggaagatgaagatgagacactacctccaagccatggtagacaagactgtgatctgaaacataagatcgtacgcttatacagtc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
52982938 |
ctcgagacatattggttggaagatgaagatgagacactacctccaagccatggtcgacaagaccgtgatctgaaacataagatcgtacgcttatacagtc |
52982839 |
T |
|
| Q |
121 |
tagccaacccttggcatgctcgtgtatgtctggaatcgaaagttggttggcttggctgggatctctgcgaaaaatcgtgtgtgcggtg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||| |
|
|
| T |
52982838 |
tagccaacccttggcatgctcgtgtatgtctggaatcgaaagttggttggcttggctgggatcgctgcgaaaaatcgtgggagcggtg |
52982751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 55619062 - 55618926
Alignment:
| Q |
21 |
ctcgagacatattggttggaagatgaagatgagacactacctccaagccatggtagacaagactgtgatctgaaacataagatcgtacgcttatacagtc |
120 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| ||| || ||||| |||||||||||||| ||||||| |
|
|
| T |
55619062 |
ctcgagacatattggttggaagatgtagatgagacactacctctaggccatggtagactagatcccaattcgaaacgtaagatcgtacgctactacagtc |
55618963 |
T |
|
| Q |
121 |
tagccaacccttggcatgctcgtgtatgtctggaatc |
157 |
Q |
| |
|
| |||| |||||||| |||||||||| | |||||||| |
|
|
| T |
55618962 |
ttgccaccccttggcgtgctcgtgtacgactggaatc |
55618926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 55626366 - 55626230
Alignment:
| Q |
21 |
ctcgagacatattggttggaagatgaagatgagacactacctccaagccatggtagacaagactgtgatctgaaacataagatcgtacgcttatacagtc |
120 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| ||| || ||||| |||||||||||||| ||||||| |
|
|
| T |
55626366 |
ctcgagacatattggttggaagatgtagatgagacactacctctaggccatggtagactagatcccaattcgaaacgtaagatcgtacgctactacagtc |
55626267 |
T |
|
| Q |
121 |
tagccaacccttggcatgctcgtgtatgtctggaatc |
157 |
Q |
| |
|
| |||| |||||||| |||||||||| | |||||||| |
|
|
| T |
55626266 |
ttgccaccccttggcgtgctcgtgtacgactggaatc |
55626230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 157
Target Start/End: Complemental strand, 55657408 - 55657275
Alignment:
| Q |
24 |
gagacatattggttggaagatgaagatgagacactacctccaagccatggtagacaagactgtgatctgaaacataagatcgtacgcttatacagtctag |
123 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| | | ||| ||| || ||| || |||||| ||||||||||| || |||||||| | |
|
|
| T |
55657408 |
gagacatattggttggaagatgttgatgagacactacctctaggtcatcgtaaactagatcccaatttgaaacgtaagatcgtacactactacagtcttg |
55657309 |
T |
|
| Q |
124 |
ccaacccttggcatgctcgtgtatgtctggaatc |
157 |
Q |
| |
|
||| |||||||| |||||||||| | |||||||| |
|
|
| T |
55657308 |
ccaccccttggcgtgctcgtgtacgactggaatc |
55657275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 3671105 - 3671055
Alignment:
| Q |
24 |
gagacatattggttggaagatgaagatgagacactacctccaagccatggt |
74 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||| || ||||| |
|
|
| T |
3671105 |
gagacatattggttggaagatgaaggtgagacgctacctccaggcaatggt |
3671055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 54630481 - 54630519
Alignment:
| Q |
21 |
ctcgagacatattggttggaagatgaagatgagacacta |
59 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
54630481 |
ctcgagagatattggttggaagatgaagatgagacacta |
54630519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 54860834 - 54860799
Alignment:
| Q |
24 |
gagacatattggttggaagatgaagatgagacacta |
59 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
54860834 |
gagacatattggttggaagatgaagacgagacacta |
54860799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 13403784 - 13403837
Alignment:
| Q |
21 |
ctcgagacatattggttggaagatgaagatgagacactacctccaagccatggt |
74 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||| || ||||| |
|
|
| T |
13403784 |
ctcgagacatattggttggaagatgaagacgagacactaccaccaggcgatggt |
13403837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University