View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850_low_9 (Length: 670)
Name: NF7850_low_9
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 99 - 655
Target Start/End: Original strand, 31545252 - 31545809
Alignment:
| Q |
99 |
aacatatgatatgataggaacaagtgataagcaaagaatctattctagtattttactttttatacgctaaaaactgcctacaaaatcttgaaccataagg |
198 |
Q |
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| T |
31545252 |
aacatatgatatgataggaacaagtgataagcaaagaatctattctagtattttactttttatacgctaaaaactgcctacaaaatcttgaaccataagg |
31545351 |
T |
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| Q |
199 |
tttcttattcctatgaggaactgacagttttggataaagatcatatcatataatgtcattttcatattcaaaatctcttgatttcttataatatcatcat |
298 |
Q |
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| T |
31545352 |
tttcttattcctatgaggaactaacagttttggataaagatcatatcatataatgtcattttcatattcaaaatctcttgatttcttataatatcatcat |
31545451 |
T |
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| Q |
299 |
gacattgactgccaagtagcacattttgcactgtgtaggccatccttgtgttgtgttttgggtctgcatatcatatcattatacataccattaatcaatc |
398 |
Q |
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| T |
31545452 |
cacattgactgccaagtagcacattttgcactgtgtaggccatccttgtgttgtgttttgggtctgcatatcatatcattatacataccattaatcaatc |
31545551 |
T |
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| Q |
399 |
ttatccccgccctttgaaagttgaaacgggtgtatttgctccatctaattattcaatgaatctaagaagtgaaatcgagtaatttgcacgtcattttaaa |
498 |
Q |
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| T |
31545552 |
ttatccccgccctttgaaagttgaaatgggtgtatttgctccatctaattattcaatgaatctaa-aagtgaaatcgagtaatttgcacgtcattttaaa |
31545650 |
T |
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| Q |
499 |
ttttagggtaacatgatattgctatgtcttactctaggcctctagcagtatttgtttggtgtccaatccaaagtcaaagttttaaattgcagttccaatt |
598 |
Q |
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| T |
31545651 |
ttttagggtaacatgatattcctatgtcttgctctaggcctctagcagtatttgtttggtgtccaatccaaagtcaaagttttaaattgcagttccaatt |
31545750 |
T |
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| Q |
599 |
gcatgaa--cacgttactcttgatattaaagacaaattgaaataaatataacttgatgt |
655 |
Q |
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| T |
31545751 |
gcatgaactcacgttactcttgatattaaagaaaaattgaaataaatataacttgatgt |
31545809 |
T |
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