View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7851_high_8 (Length: 260)

Name: NF7851_high_8
Description: NF7851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7851_high_8
NF7851_high_8
[»] chr2 (12 HSPs)
chr2 (17-246)||(44895584-44895813)
chr2 (64-149)||(39397957-39398042)
chr2 (57-132)||(39137707-39137782)
chr2 (64-147)||(39468191-39468274)
chr2 (67-125)||(39161716-39161774)
chr2 (67-125)||(39207420-39207478)
chr2 (64-130)||(39222754-39222820)
chr2 (69-130)||(39389250-39389311)
chr2 (141-175)||(39389301-39389335)
chr2 (86-131)||(39458637-39458682)
chr2 (64-132)||(39152451-39152519)
chr2 (64-132)||(39459119-39459187)
[»] chr7 (1 HSPs)
chr7 (57-145)||(19807644-19807732)
[»] chr3 (1 HSPs)
chr3 (67-131)||(51574935-51574999)
[»] chr5 (1 HSPs)
chr5 (67-125)||(33560888-33560946)
[»] chr6 (1 HSPs)
chr6 (64-149)||(16113149-16113234)


Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 44895584 - 44895813
Alignment:
Q  17 taaacttacccatctttgattcacgattcttgacttgtgcttcaagctgcttctcttttgatttgaaggcctcaacttggctttcaaaacgcttcttttc 116  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44895584 taaacttacccatctttgattcatgattcttgacttgtgcttcaagctgcttctcttttgatttgaaggcctcaacttggctttcaaaacgcttcttttc 44895683  T
Q  117 tgattcgagctccttagcacaaccttcgagttccacctcctttgatttaatgcccttcattcggccctcaaacttcttcttttctgattcaagctccttc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44895684 tgattcgagctccttagcacaaccttcgagttccacctcctttgatttaatgcccttcattcggccctcaaacttcttcttttctgattcaagctccttc 44895783  T
Q  217 acccggttttcaaactccttcttttctgat 246  Q
    ||||||||||||||||||||||||||||||    
T  44895784 acccggttttcaaactccttcttttctgat 44895813  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 39397957 - 39398042
Alignment:
Q  64 tgcttctcttttgatttgaaggcctcaacttggctttcaaaacgcttcttttctgattcgagctccttagcacaaccttcgagttc 149  Q
    ||||| ||||||||||||||  |||||||||||||||||||  |||| |||| | |||||||||||||| | | ||||||||||||    
T  39397957 tgcttatcttttgatttgaaatcctcaacttggctttcaaagtgcttattttgtaattcgagctccttaactcgaccttcgagttc 39398042  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 39137782 - 39137707
Alignment:
Q  57 ttcaagctgcttctcttttgatttgaaggcctcaacttggctttcaaaacgcttcttttctgattcgagctcctta 132  Q
    |||||| ||||||||||||||||||||  ||||||||||| |||| ||  ||||||||| ||||| ||||||||||    
T  39137782 ttcaagttgcttctcttttgatttgaaatcctcaacttggttttcgaattgcttcttttttgatttgagctcctta 39137707  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 39468274 - 39468191
Alignment:
Q  64 tgcttctcttttgatttgaaggcctcaacttggctttcaaaacgcttcttttctgattcgagctccttagcacaaccttcgagt 147  Q
    ||||| ||||||||||||||  |||||||||| || ||||||   ||||||| |||||||||||||||| | | ||||||||||    
T  39468274 tgcttatcttttgatttgaaatcctcaacttgactgtcaaaatatttcttttttgattcgagctccttaactcgaccttcgagt 39468191  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 39161774 - 39161716
Alignment:
Q  67 ttctcttttgatttgaaggcctcaacttggctttcaaaacgcttcttttctgattcgag 125  Q
    |||| ||||||||||||| |||||||||| ||||||||| |||| |||| |||||||||    
T  39161774 ttctgttttgatttgaagtcctcaacttgtctttcaaaatgcttattttttgattcgag 39161716  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 39207420 - 39207478
Alignment:
Q  67 ttctcttttgatttgaaggcctcaacttggctttcaaaacgcttcttttctgattcgag 125  Q
    |||| ||||||||||||| |||||||||| ||||||||| |||| |||| |||||||||    
T  39207420 ttctgttttgatttgaagtcctcaacttgtctttcaaaatgcttattttttgattcgag 39207478  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 39222820 - 39222754
Alignment:
Q  64 tgcttctcttttgatttgaaggcctcaacttggctttcaaaacgcttcttttctgattcgagctcct 130  Q
    ||||||||||||||||| ||  |||| ||||||||||| ||| ||||||||| ||||||||| ||||    
T  39222820 tgcttctcttttgatttaaactcctcgacttggctttcgaaatgcttcttttttgattcgagttcct 39222754  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 39389250 - 39389311
Alignment:
Q  69 ctcttttgatttgaaggcctcaacttggctttcaaaacgcttcttttctgattcgagctcct 130  Q
    |||||||||||||||| |||||||||||||||  ||| ||| ||||| ||||||||| ||||    
T  39389250 ctcttttgatttgaagtcctcaacttggcttttcaaatgctccttttgtgattcgagttcct 39389311  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 39389301 - 39389335
Alignment:
Q  141 ttcgagttccacctcctttgatttaatgcccttca 175  Q
    |||||||||| ||||||||||||||||||||||||    
T  39389301 ttcgagttcctcctcctttgatttaatgcccttca 39389335  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 39458682 - 39458637
Alignment:
Q  86 cctcaacttggctttcaaaacgcttcttttctgattcgagctcctt 131  Q
    |||| |||||||||||||||| ||||||||| ||||| ||||||||    
T  39458682 cctccacttggctttcaaaactcttcttttcagattccagctcctt 39458637  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 39152519 - 39152451
Alignment:
Q  64 tgcttctcttttgatttgaaggcctcaacttggctttcaaaacgcttcttttctgattcgagctcctta 132  Q
    ||||||||||||| ||||||| ||||||| ||| |||||||   |||||||| |||||  |||||||||    
T  39152519 tgcttctcttttgttttgaagtcctcaacctggatttcaaatttcttcttttttgatttaagctcctta 39152451  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 39459187 - 39459119
Alignment:
Q  64 tgcttctcttttgatttgaaggcctcaacttggctttcaaaacgcttcttttctgattcgagctcctta 132  Q
    |||||||||||| |||||||| ||||||  |||||||||||  ||||||||| ||| | ||||| ||||    
T  39459187 tgcttctcttttaatttgaagtcctcaaactggctttcaaattgcttcttttttgaattgagctgctta 39459119  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 19807732 - 19807644
Alignment:
Q  57 ttcaagctgcttctcttttgatttgaaggcctcaacttggctttcaaaacgcttcttttctgattcgagctccttagcacaaccttcga 145  Q
    |||||| ||||||||||||||||||||| ||||||||||| |||| ||  ||||||||| | ||| || ||||||| | | ||||||||    
T  19807732 ttcaagttgcttctcttttgatttgaagtcctcaacttggttttcgaattgcttctttttttatttgaactccttaactcgaccttcga 19807644  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 51574999 - 51574935
Alignment:
Q  67 ttctcttttgatttgaaggcctcaacttggctttcaaaacgcttcttttctgattcgagctcctt 131  Q
    ||||||||||||||||   |||  ||||||||||||||| |||||||||||||||| | ||||||    
T  51574999 ttctcttttgatttgagttccttcacttggctttcaaaatgcttcttttctgattcaacctcctt 51574935  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 33560946 - 33560888
Alignment:
Q  67 ttctcttttgatttgaaggcctcaacttggctttcaaaacgcttcttttctgattcgag 125  Q
    |||| ||||||||||||| |||||||||| ||| ||||| |||||| || |||||||||    
T  33560946 ttctgttttgatttgaagtcctcaacttgtcttgcaaaatgcttctcttttgattcgag 33560888  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 16113234 - 16113149
Alignment:
Q  64 tgcttctcttttgatttgaaggcctcaacttggctttcaaaacgcttcttttctgattcgagctccttagcacaaccttcgagttc 149  Q
    ||||| || |||||||||||   ||||||||||||||| ||| |||| |||| |||||||| ||||||| | | |||||| |||||    
T  16113234 tgcttatcgtttgatttgaaatactcaacttggctttccaaatgcttattttttgattcgatctccttaactcgaccttcaagttc 16113149  T

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