View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7851_low_1 (Length: 837)
Name: NF7851_low_1
Description: NF7851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7851_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 428 - 829
Target Start/End: Original strand, 11370307 - 11370708
Alignment:
| Q |
428 |
tgatatgatctgagtttagccgttccgttattgatcataaatttaattgtctcgcagcgcgttcgagaagacgagtatgagaagtacattcactatgatc |
527 |
Q |
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| T |
11370307 |
tgatatgatctgagtttagccgttccgttattgatcataaatttaatcgtctcgcagcgcgttcgagaagacgagtatgagaagtacattcactatgatc |
11370406 |
T |
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| Q |
528 |
aaatatttcctggattttattttttggaaccttgcttttcattgtttagtcaatgccctgagcttctaagtaatgctttgaaagcaatggcatcaactat |
627 |
Q |
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| T |
11370407 |
aaatatttcctggattttattttttggaaccttgcttttcattgtttagtcaatgccctgagcttctaagtaatgctttgaaagcaatggcatcaactat |
11370506 |
T |
|
| Q |
628 |
aaactatgatgcattgaagacaatgacatcaggcataggtttctacttggtatctgaagatgaccgtaaagagatgaggaattgtttgactagggtaaat |
727 |
Q |
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| T |
11370507 |
aacctatgatgcattgaagacaatgacatcaggcataggtttctacttggtatctgaagatgaccgtaaagagatgaggaattgtttgactagggcaaat |
11370606 |
T |
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| Q |
728 |
gtgattacatccgtaattgtgttgatgagcaaagacataagattaaaatctatgtctatcttcaaaaatgaaatcaattacatcatagatgatgtccatc |
827 |
Q |
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| T |
11370607 |
gtgattacatctgtaattgtgttgatgagcaaagacataagattaaaatctatgtctgtcttcaaaaatgaaatcaattacatcatagatgaagttcatc |
11370706 |
T |
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| Q |
828 |
tc |
829 |
Q |
| |
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|| |
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| T |
11370707 |
tc |
11370708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 11369898 - 11370247
Alignment:
| Q |
18 |
ctttgctcagtttaagtggctgcaatgcaagaattaatgattgtatatgagtgtttgttgctgtaatgagatgtttataagttgaagttgcattttttga |
117 |
Q |
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| T |
11369898 |
ctttgctcagtttaagtggctgcaatgcaagaattaatgattgtgtatgagtgtttgttgctgtaatgagatgtttataagttgaagttgcattttttga |
11369997 |
T |
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| Q |
118 |
cgaaatttgacacattaggtgcagggattgatgtgttgttttcgaaaacgggtgtaccagtaacacttgagttttgcaaattaggtgttgttttatttta |
217 |
Q |
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| T |
11369998 |
cgaaatttgacacattaggtgcagggattgatgtgttgttttcgaaaacgggtgtaccagtaccacttgagttttgcaaattaggtgttgttttatttta |
11370097 |
T |
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| Q |
218 |
tatgtagctgtcgggtcagttgggcatggagtttttgtcctctatgtttaagctctttatatctttgtatacttatactcttgtttacatttagacattt |
317 |
Q |
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| T |
11370098 |
tatgtagccgtcgggtctgttgggcatggagtttttgtcctctatgtttaagctctttatatctttgtatacttatactcttgtttacatttagacattt |
11370197 |
T |
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| Q |
318 |
gttttgaggtaggaaaagatataaaattattggttgacatgacatcttac |
367 |
Q |
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| T |
11370198 |
gttttgaggtaggaaaagatataaaattattggttgacatgacatcttac |
11370247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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