View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7851_low_10 (Length: 399)

Name: NF7851_low_10
Description: NF7851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7851_low_10
NF7851_low_10
[»] chr4 (10 HSPs)
chr4 (31-387)||(37232557-37232913)
chr4 (44-387)||(37252799-37253162)
chr4 (162-329)||(37257059-37257238)
chr4 (167-247)||(37244881-37244961)
chr4 (165-240)||(37237606-37237681)
chr4 (324-368)||(37241994-37242038)
chr4 (246-301)||(37237699-37237754)
chr4 (321-368)||(37245014-37245061)
chr4 (44-97)||(37237486-37237539)
chr4 (44-91)||(37256943-37256990)
[»] chr6 (4 HSPs)
chr6 (146-287)||(14316667-14316817)
chr6 (161-247)||(14253954-14254040)
chr6 (146-240)||(14248129-14248223)
chr6 (247-378)||(14351659-14351790)
[»] scaffold1652 (1 HSPs)
scaffold1652 (146-235)||(595-684)
[»] scaffold0902 (2 HSPs)
scaffold0902 (146-238)||(3185-3277)
scaffold0902 (318-368)||(3360-3410)
[»] scaffold1176 (2 HSPs)
scaffold1176 (161-240)||(371-450)
scaffold1176 (247-299)||(123-175)
[»] scaffold1801 (2 HSPs)
scaffold1801 (169-239)||(268-338)
scaffold1801 (319-368)||(127-176)


Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 31 - 387
Target Start/End: Original strand, 37232557 - 37232913
Alignment:
Q  31 tgtataattaaattaatagaatgaatgaatcgtagtcacacggatcgaaacagggcaacaacaaaaaggaaaatagttctcacgatcagtgtaaattcgt 130  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37232557 tgtataattaaattaatagaatgaatgaatcgtagtcacacagatcgaaacagggcaacaacaaaaaggaaaatagttctcacgatctgtgtaaattcgt 37232656  T
Q  131 gataagaaaaagaacaaaataaactaagagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctatt 230  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37232657 gataagaaaaagaacataataaactaagagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctatt 37232756  T
Q  231 caaagcggcgccgtttgatggtgcttcagcaggaggagtggagatcgatgatggagtaagagcaggagcgacggcgggtgaaccagaggaagcaggagga 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  37232757 caaagcggcgccgtttgatggtgcttcagcaggaggagtggagatcgatgatggagtaacagcaggagcggcggcgggtgaaccagaggaagcaggagga 37232856  T
Q  331 ggagatggtggagagttgatggtggatggtgaaggagatggagaattcttcacaggt 387  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  37232857 ggagatggtggagagttgatggcggatggcgaaggagatggagaattcttcacaggt 37232913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 44 - 387
Target Start/End: Original strand, 37252799 - 37253162
Alignment:
Q  44 taatagaatgaatgaatcgtagtcacacggatcgaaacagggcaacaacaaaaaggaaaatagt---tctcacgatcagtgtaaattcgtgat----aag 136  Q
    |||| |||||||| |||||| ||| ||| ||||||||||| | ||||||||||||| | |||||   ||||||||||  ||||||||||||||    ||     
T  37252799 taatcgaatgaataaatcgtcgtcgcacagatcgaaacagagaaacaacaaaaaggtacatagtagttctcacgatccatgtaaattcgtgatgtaaaaa 37252898  T
Q  137 aaaaagaacaaaataaactaa----------gagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatc 226  Q
    ||| | || |||||||| |||          ||||||||||||| |  ||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||    
T  37252899 aaacaaaataaaataaaataaaataaaactcgagtaactctctatagtatcaaagcggcggcgaaaaccactacagcagcagatccggcaacggtaaatc 37252998  T
Q  227 tattcaaagcggcgccgttt---gatggtgcttcagcaggaggagtggagatcgatgatggagtaagagcaggagcgacggcgggtgaaccagaggaagc 323  Q
    | ||||||||||| ||||||   || ||| |||| | |||||||||||| || |||||||||||||||||||||| ||| ||||| ||  | || |||||    
T  37252999 tgttcaaagcggcaccgttttcggaaggtccttcggaaggaggagtggaaatggatgatggagtaagagcaggagagacagcgggagagtcggatgaagc 37253098  T
Q  324 aggaggaggagatggtggagagttgatggtggatggtgaaggagatggagaattcttcacaggt 387  Q
    |||||||||||||||||||||||||||||  || ||||||||||||||||  ||||||||||||    
T  37253099 aggaggaggagatggtggagagttgatggctgaaggtgaaggagatggagcgttcttcacaggt 37253162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 162 - 329
Target Start/End: Original strand, 37257059 - 37257238
Alignment:
Q  162 aactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcgcc---gtt---------tgat 249  Q
    ||||||||||||||||||||| || ||||||| || ||||||||||||||| |||||||||||||| || ||||||||| |   |||         |||     
T  37257059 aactctctacatcatcaaagcagcggcgaaaaccataacagcagcagatccagcaacggtgaatctgttaaaagcggcggcggagttgtctgaaggtgaa 37257158  T
Q  250 ggtgcttcagcaggaggagtggagatcgatgatggagtaagagcaggagcgacggcgggtgaaccagaggaagcaggagg 329  Q
    |||||||||| ||||| ||| ||||| ||||||||||||| ||||||||  || ||||| ||  ||||||||||||||||    
T  37257159 ggtgcttcagaaggagtagtagagatggatgatggagtaacagcaggagaaacagcgggagagtcagaggaagcaggagg 37257238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 37244881 - 37244961
Alignment:
Q  167 tctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcgccgtttg 247  Q
    |||| ||||||||| | |||||||||| |||||||||||||||||||||||| |||||||| || ||||||||||||||||    
T  37244881 tctatatcatcaaaacagcagcgaaaaccacaacagcagcagatccggcaacagtgaatctgttgaaagcggcgccgtttg 37244961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 37237606 - 37237681
Alignment:
Q  165 tctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcg 240  Q
    |||||||||||||||||| ||||| ||||  ||| ||||||||||| |||||| ||||||||| ||||| ||||||    
T  37237606 tctctacatcatcaaagctgcagcaaaaacaacagcagcagcagatacggcaaaggtgaatctgttcaatgcggcg 37237681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 37241994 - 37242038
Alignment:
Q  324 aggaggaggagatggtggagagttgatggtggatggtgaaggaga 368  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||    
T  37241994 aggaggaggagatggtggagagttgatggcggacggtgaaggaga 37242038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 301
Target Start/End: Original strand, 37237699 - 37237754
Alignment:
Q  246 tgatggtgcttcagcaggaggagtggagatcgatgatggagtaagagcaggagcga 301  Q
    ||| |||||||||| ||||||||| ||||| ||||||||||||| |||||||||||    
T  37237699 tgaaggtgcttcagaaggaggagtagagatggatgatggagtaacagcaggagcga 37237754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 368
Target Start/End: Original strand, 37245014 - 37245061
Alignment:
Q  321 agcaggaggaggagatggtggagagttgatggtggatggtgaaggaga 368  Q
    |||||||||||||||||||||||||||| ||||||| ||||| |||||    
T  37245014 agcaggaggaggagatggtggagagttgttggtggacggtgatggaga 37245061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 37237486 - 37237539
Alignment:
Q  44 taatagaatgaatgaatcgtagtcacacggatcgaaacagggcaacaacaaaaa 97  Q
    |||| |||||||||||| || |||||||||| |||||||| |||||||||||||    
T  37237486 taattgaatgaatgaattgtcgtcacacggaccgaaacagagcaacaacaaaaa 37237539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 37256943 - 37256990
Alignment:
Q  44 taatagaatgaatgaatcgtagtcacacggatcgaaacagggcaacaa 91  Q
    ||||| ||||||||||| |||||||||| ||||||||||| |||||||    
T  37256943 taataaaatgaatgaatggtagtcacacagatcgaaacagagcaacaa 37256990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 146 - 287
Target Start/End: Original strand, 14316667 - 14316817
Alignment:
Q  146 aaaataaactaagagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcgccgt- 244  Q
    |||| ||||||||  |||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||| ||| ||||| |||||||||||| |||     
T  14316667 aaaaaaaactaagcctaactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccggcaagggtaaatctgttcaaagcggcgtcgtt 14316766  T
Q  245 --------ttgatggtgcttcagcaggaggagtggagatcgatgatggagt 287  Q
            |||||||||||| || |||||| || |||||||||||||||||    
T  14316767 cgtggacgttgatggtgctttagaaggaggggtagagatcgatgatggagt 14316817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 14253954 - 14254040
Alignment:
Q  161 taactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcgccgtttg 247  Q
    |||||||||||||||||||||| |||||||||| ||| |||||||||||||| ||||| || ||||| |||||||||||| ||||||    
T  14253954 taactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccagcaactgtaaatctgttcaaagcggcgtcgtttg 14254040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 14248129 - 14248223
Alignment:
Q  146 aaaataaactaagagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcg 240  Q
    |||| ||||||||  |||||||||||||||||||||| ||| | |||| ||| ||||||| |||||||||||| || ||||| ||||||||||||    
T  14248129 aaaaaaaactaagcctaactctctacatcatcaaagcagcaacaaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcg 14248223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 378
Target Start/End: Original strand, 14351659 - 14351790
Alignment:
Q  247 gatggtgcttcagcaggaggagtggagatcgatgatggagtaagagcaggagcgacggcgggtgaaccagaggaagcaggaggaggagatggtggagagt 346  Q
    |||||||||| ||  || ||||| ||||  ||||||||||||| |||||||||||| ||||| |||||| |||||||| ||||||  ||||  |||||||    
T  14351659 gatggtgcttgagatggtggagtagagactgatgatggagtaacagcaggagcgacagcgggagaaccaaaggaagcatgaggagaggatgtcggagagt 14351758  T
Q  347 tgatggtggatggtgaaggagatggagaattc 378  Q
    | ||||   |  ||||||||||||||| ||||    
T  14351759 taatggcaaacagtgaaggagatggagcattc 14351790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 146 - 235
Target Start/End: Complemental strand, 684 - 595
Alignment:
Q  146 aaaataaactaagagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaag 235  Q
    ||||||||||  | ||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||||||| || ||||| |||||||    
T  684 aaaataaactctgcgtaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaag 595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 3185 - 3277
Alignment:
Q  146 aaaataaactaagagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcgg 238  Q
    |||||||||| ||  |||||||||||||||||||||| || | ||||| ||| |||||||||||||||||||| || ||||| ||||||||||    
T  3185 aaaataaactcagcctaactctctacatcatcaaagcagccgtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcgg 3277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 368
Target Start/End: Original strand, 3360 - 3410
Alignment:
Q  318 ggaagcaggaggaggagatggtggagagttgatggtggatggtgaaggaga 368  Q
    ||||||| |||||||||||||||||||||||||||  || |||||||||||    
T  3360 ggaagcatgaggaggagatggtggagagttgatggcagacggtgaaggaga 3410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 450 - 371
Alignment:
Q  161 taactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcg 240  Q
    |||||||||||||||||||||| |||  ||||| ||| ||||||| |||||||||||| || ||||| ||||||||||||    
T  450 taactctctacatcatcaaagcagcaatgaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcg 371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 175 - 123
Alignment:
Q  247 gatggtgcttcagcaggaggagtggagatcgatgatggagtaagagcaggagc 299  Q
    |||||||||| ||  |||||||| ||||||||||||||||| | |||||||||    
T  175 gatggtgcttgagatggaggagtagagatcgatgatggagtcacagcaggagc 123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1801 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 338 - 268
Alignment:
Q  169 tacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggc 239  Q
    |||||||||||||| ||||  ||||  || |||||||||||||||||||| || ||||| |||||||||||    
T  338 tacatcatcaaagcagcagttaaaaggacgacagcagcagatccggcaactgtaaatctgttcaaagcggc 268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1801; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 176 - 127
Alignment:
Q  319 gaagcaggaggaggagatggtggagagttgatggtggatggtgaaggaga 368  Q
    |||||| ||||||||||| |||||||||||||||  || |||||||||||    
T  176 gaagcatgaggaggagattgtggagagttgatggcagacggtgaaggaga 127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University