View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7851_low_15 (Length: 332)
Name: NF7851_low_15
Description: NF7851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7851_low_15 |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 36734478 - 36734178
Alignment:
| Q |
18 |
aaatctgagtcacttgtcacttaccaagatgaaggcttttatgttctccattttcaatttgatttcagagctctcatcttcaagaatatccaataaaata |
117 |
Q |
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| T |
36734478 |
aaatctgagtcacttgtcacttaccaagatgaaggcttttatgttctccattttcaatttgatttcagagctctcatcttcaagaatatccaataaaata |
36734379 |
T |
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| Q |
118 |
tcaagtagatccttaatttgaccttctcctccaccaacttcctttctcctcctccttacttcttgatgctccttgataatcctctccatcatagaatcaa |
217 |
Q |
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| T |
36734378 |
tcaagtagatccttaatttgaccttctcctccaccaacttcttttctcctcctccttacttcttgatgctccttgataatcctctccatcatagaatcaa |
36734279 |
T |
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| Q |
218 |
acctgtccctaatttcctttaaccctttgctaaacccctggacatcccagttcttaaaaaaccaaataaaatcagaaatattaaacttccccgtatgatg |
317 |
Q |
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| T |
36734278 |
acctgtccctaatttcctctaaccctttgctaaacccctggacatcccagttcttaaaaaaccaaataaaatcagaaatattaaacttccccgtaagatg |
36734179 |
T |
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| Q |
318 |
t |
318 |
Q |
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| T |
36734178 |
t |
36734178 |
T |
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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 24649 - 24587
Alignment:
| Q |
71 |
tcaatttgatttcagagctctcatcttcaagaatatccaataaaatatcaagtagatccttaa |
133 |
Q |
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| T |
24649 |
tcaattttatttcactgctctcatcttcatgaatttccaacaaaatatcaagcaaatccttaa |
24587 |
T |
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