View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7851_low_19 (Length: 303)
Name: NF7851_low_19
Description: NF7851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7851_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 53 - 292
Target Start/End: Original strand, 5778822 - 5779061
Alignment:
| Q |
53 |
tcctcaacctaaccaaaattctttacacctctcacactttctttaaagcagcatcggagtttcattctctccgcattgacagtgagattgacactcgtta |
152 |
Q |
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| T |
5778822 |
tcctcaacctaaccaaaattctttactcatctcacactttctttaaagcagcctcggagtttcattctctcggcattgacagtgagattgacactcgtta |
5778921 |
T |
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| Q |
153 |
ttcaaccacggtatttgttccggatgacaaagcattcacaaatgctactgtttccaaaagatatgagtcgcttagcgacgataacaagtatttcgttctc |
252 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5778922 |
ttcaaccacggtatttgttccggatgacaaagcattcgcaaatgctactgtttccaaaagatatgagtcgcttagcgacgataacaagtatttcgttctc |
5779021 |
T |
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| Q |
253 |
aaatgtcatatgttgaaagaatatttgcctcctgatgtcc |
292 |
Q |
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| T |
5779022 |
aaatgtcatatgttgaaagaatatttgcctcctgctgtcc |
5779061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 56 - 278
Target Start/End: Complemental strand, 5796958 - 5796736
Alignment:
| Q |
56 |
tcaacctaaccaaaattctttacacctctcacactttctttaaagcagcatcggagtttcattctctccgcattgacagtgagattgacactcgttattc |
155 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
5796958 |
tcaacctaaccaaaattctttactcctctcacactttctttaaagcagcctcggagtttcattctctcggcattgacagtgagattgacactcgttatcc |
5796859 |
T |
|
| Q |
156 |
aaccacggtatttgttccggatgacaaagcattcacaaatgctactgtttccaaaagatatgagtcgcttagcgacgataacaagtatttcgttctcaaa |
255 |
Q |
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| T |
5796858 |
aaccacggtatttgtttctgataacaaagcattcgtagatgctactgtttccaaaagatacaagtcgcttagcgacaataacaaatattttgttctcaag |
5796759 |
T |
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| Q |
256 |
tgtcatatgttgaaagaatattt |
278 |
Q |
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| T |
5796758 |
tgtcatgtatcgagagaatattt |
5796736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 53 - 239
Target Start/End: Original strand, 5796550 - 5796736
Alignment:
| Q |
53 |
tcctcaacctaaccaaaattctttacacctctcacactttctttaaagcagcatcggagtttcattctctccgcattgacagtgagattgacactcgtta |
152 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
5796550 |
tcctcaacctaaccaaaattctttactcctctcacactttctttaaagcaacctcggagtttcattctctcggcattgacagtgatattgacactcgtta |
5796649 |
T |
|
| Q |
153 |
ttcaaccacggtatttgttccggatgacaaagcattcacaaatgctactgtttccaaaagatatgagtcgcttagcgacgataacaa |
239 |
Q |
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| T |
5796650 |
tccaaccacgatatttgttcctgatgacaaagcattcgcaaatgcttctgtttccaaaagatataactcgcttagcaacgataacaa |
5796736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 80 - 278
Target Start/End: Original strand, 5817125 - 5817322
Alignment:
| Q |
80 |
cctctcacactttctttaaagcagcatcggagtttcattctctccgcattgacagtgagattgacactcgttattcaaccacggtatttgttccggatga |
179 |
Q |
| |
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||||| ||||||||||| ||||| | |||| |||||| |||| | ||||||| |||||||||||||||| || ||| || ||||| |||| ||||| |
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| T |
5817125 |
cctctgacactttctttgaagcaacttcggtgtttcaatctcacgtcattgaccttgagattgacactcgtgatccaattacaatattt-ttcctgatga |
5817223 |
T |
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| Q |
180 |
caaagcattcacaaatgctactgtttccaaaagatatgagtcgcttagcgacgataacaagtatttcgttctcaaatgtcatatgttgaaagaatattt |
278 |
Q |
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|||||||||| || ||||| |||||| ||||||||| |||||||||| ||||||||||||||||| |||||| | |||||||| |||| ||||||||| |
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| T |
5817224 |
caaagcattcgcagatgcttatgtttctaaaagatataagtcgcttagtgacgataacaagtattttgttctcgagtgtcatatattgagagaatattt |
5817322 |
T |
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