View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7851_low_2 (Length: 771)
Name: NF7851_low_2
Description: NF7851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7851_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 727; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 727; E-Value: 0
Query Start/End: Original strand, 14 - 752
Target Start/End: Original strand, 47466839 - 47467577
Alignment:
| Q |
14 |
acctgtggaaactgatatgcgtatgattgtgaatgtggatgtataaattaacctagccctagtttattttaaaaatttgaacaacaggcagagagaaaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47466839 |
acctgtggaaactgatatgcgtatgattgtgaatgtggatgtataaattaacctagccctagtttattttaaaaatttgaacaacaggcagagagaaaaa |
47466938 |
T |
|
| Q |
114 |
taatcacaatttcacatctctctccagacaaggaatatattagtagaacatgatttcacattaattataagcaaattggtttaatcacataacatggaca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47466939 |
taatcacaatttcacatctctctccagacaaggaatatattagtagaacatgatttcacattaattataagcaaattggtttaatcacataacatggaca |
47467038 |
T |
|
| Q |
214 |
caactaagcatgaaacacaaattttgctgagttatccgcattcgaccaataacaatcggttttattatatgggattaaatttttaacaacattcaaagag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47467039 |
caactaagcatgaaacacaaattttgctgagttatccgcattcgaccaatgacaatcggttttattatatgggattaaatttttaacaacattcaaagag |
47467138 |
T |
|
| Q |
314 |
accagaaactagtttgagtctcaaacactgaggtacaaaactggcatcaagctatgattttgttggagtattagcaaacttccaagaacattgaacaaaa |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47467139 |
accagaaactagtttgagtctcaaacactgaggtacaaaactggcatcaagctatgattttgttggagtattagcaaacttccaagaacattgaacaaaa |
47467238 |
T |
|
| Q |
414 |
gcaccagttgtccgatcccctgacacctcagatattggcacagcatcttcaatctccttcaaatcatttttgttgagtttcactttaaacgaactgatat |
513 |
Q |
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| T |
47467239 |
gcaccagttgtccgatcccctgacacctcagatattggcacagcatcttcaatctccttcaaatcatttttgttgagtttcactttaaacgaactgatat |
47467338 |
T |
|
| Q |
514 |
tactttcaagattttttatcttagttgttcctacaacacatgacaggttgcaaagtcatatttgcaacaacaaaaggaatcataattgaggtttcaaaaa |
613 |
Q |
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| T |
47467339 |
tactttcaagattttttatcttagttgttcctacaacacatgacagtctgcaaagtcatatttgcaacaacaaaaggaatcataattgaggtttcaaaaa |
47467438 |
T |
|
| Q |
614 |
tttcaaataatttcatgtagtgaatttgtcataacagattgattagtatccttccctgaacattcaaattatacacgggagtaagctccatagatgccta |
713 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47467439 |
tttcaaataatttcatgtagtgaatttgtcataacagattgattagtatccttccctgaacattcaaattatacacgggagtaagctccatagatgccta |
47467538 |
T |
|
| Q |
714 |
acttgttgaggtcacaaagtggaaagttacttaccaggg |
752 |
Q |
| |
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| T |
47467539 |
acttgttgaggtcacaaagtggaaagttacttaccaggg |
47467577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 115 - 455
Target Start/End: Complemental strand, 47227679 - 47227346
Alignment:
| Q |
115 |
aatcacaatttcacatctctctccagacaaggaatatattagtagaacatgatttcacattaattataagcaaattggtttaatcacataacatggacac |
214 |
Q |
| |
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||||||||||||||||||||| ||||||| ||| |||||||| |||||||||| ||| |||||| |||||||| ||||||||||| ||||||| | | |
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| T |
47227679 |
aatcacaatttcacatctctc--cagacaatgaaaatattagtggaacatgattgcacgttaattttaagcaaactggtttaatcatgtaacatgtatat |
47227582 |
T |
|
| Q |
215 |
aactaagcatgaaacacaaattttgctgagttatccgcattcgaccaataacaatcggttttatta-tatgggattaaatttttaacaacattcaaagag |
313 |
Q |
| |
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|| |||||||| ||||||||||| |||||| ||| || |||| ||||||||||||| |||||||| ||||||||||| ||| | | ||||||| |
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| T |
47227581 |
aattaagcatggaacacaaatttggctgagctatacgtattcaaccaataacaatcagttttattcgtatgggattaactttgagtta---tgcaaagag |
47227485 |
T |
|
| Q |
314 |
accagaaactagtttgagtctcaaacactgaggtacaaaactggcatcaagctatgattttgttggagtattagcaaacttccaagaacattgaacaaaa |
413 |
Q |
| |
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||||||||||||||||| ||||||||| |||||||||| ||||||||||| |||| |||||||| |||||||||||||||||| ||||| ||||||||| |
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| T |
47227484 |
accagaaactagtttgaatctcaaaca--gaggtacaaa-ctggcatcaaggtatgcttttgttgaagtattagcaaacttccatgaacaatgaacaaaa |
47227388 |
T |
|
| Q |
414 |
gcaccagttgtccgatcccctgacacctcagatattggcaca |
455 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||| |
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| T |
47227387 |
ccatcagttgtccgatcccctgacacctcagatattggcaca |
47227346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 513 - 597
Target Start/End: Complemental strand, 47227340 - 47227254
Alignment:
| Q |
513 |
ttactttcaagattttttatcttagttgttcctacaacacatgacaggtt---gcaaagtcatatttgcaacaacaaaaggaatcata |
597 |
Q |
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|||||||||||||| |||||||| ||||||| |||||||||||| ||||| | || |||||| |||||||||| |||||||||||| |
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| T |
47227340 |
ttactttcaagattctttatcttcgttgttcatacaacacatgagaggttatagaaatgtcatacttgcaacaac-aaaggaatcata |
47227254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 76 - 279
Target Start/End: Original strand, 28830879 - 28831076
Alignment:
| Q |
76 |
tttattttaaaaatttgaacaacaggcagagagaaaaataatcacaatttcacatctctctccagacaaggaatatattagtagaacatgatttcacatt |
175 |
Q |
| |
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|||||||| ||| || |||||||||||||| ||||||| |||||||||| |||||||| | || || ||| |||||||| ||||||||||||| ||| |
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| T |
28830879 |
tttattttgaaacttaaaacaacaggcagag-gaaaaatg-tcacaatttcgcatctctc--cggataaagaaaatattagtggaacatgatttcatatt |
28830974 |
T |
|
| Q |
176 |
aattataagcaaattggtttaatcacataacatggacacaactaagcatgaaacacaaattttgctgagttatccgcattcgaccaataacaatcggttt |
275 |
Q |
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||||| |||||| |||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |||| |||||||||| | ||||| |
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| T |
28830975 |
aatta--agcaaactggtttaatcacataacatgtacataattaagcatgaaacacaaattttgctgagttatccgtattcaaccaataacactaggttt |
28831072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 319 - 408
Target Start/End: Original strand, 46923105 - 46923195
Alignment:
| Q |
319 |
aaactagtttgagtctcaaacactgaggtacaaaactggcatcaagctatgattttgtt-ggagtattagcaaacttccaagaacattgaa |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| |||||||||| ||||||||| |||||||||| |
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| T |
46923105 |
aaactagtttgagtctcaaacactgaggtacaaaattggcatcgagctatgcttttgttgggagtattagaaaacttccatgaacattgaa |
46923195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 218 - 279
Target Start/End: Original strand, 46922960 - 46923015
Alignment:
| Q |
218 |
taagcatgaaacacaaattttgctgagttatccgcattcgaccaataacaatcggttttatt |
279 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
46922960 |
taagcatgaaacacaaattttgctgagttatc------cgaccattaacaatcggttttatt |
46923015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 180
Target Start/End: Complemental strand, 1466313 - 1466217
Alignment:
| Q |
80 |
ttttaaaaatttgaacaacaggcagagagaaaaataatcacaatttcacatctctctccagacaaggaatatattagtagaacatgatttcacattaatt |
179 |
Q |
| |
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|||||||| || ||||||||||||||| ||||||| | |||||||| || ||||||| ||||| ||| |||||||| ||| ||||||||| ||||||| |
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| T |
1466313 |
ttttaaaacttagaacaacaggcagag-gaaaaat-gttacaatttcgca--tctctccggacaaagaaaatattagtggaatatgatttcatattaatt |
1466218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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