View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7851_low_20 (Length: 290)

Name: NF7851_low_20
Description: NF7851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7851_low_20
NF7851_low_20
[»] chr5 (7 HSPs)
chr5 (1-288)||(11504279-11504566)
chr5 (1-288)||(11511673-11511960)
chr5 (1-288)||(11519049-11519336)
chr5 (1-288)||(11526454-11526741)
chr5 (1-288)||(11533864-11534151)
chr5 (1-288)||(11496952-11497239)
chr5 (1-288)||(11541281-11541568)
[»] scaffold1005 (1 HSPs)
scaffold1005 (1-288)||(2424-2711)
[»] chr1 (5 HSPs)
chr1 (35-288)||(41556215-41556468)
chr1 (104-288)||(44179778-44179962)
chr1 (104-288)||(44206909-44207093)
chr1 (31-96)||(44180824-44180889)
chr1 (35-98)||(44208046-44208109)
[»] chr4 (1 HSPs)
chr4 (103-242)||(4860380-4860519)
[»] chr6 (2 HSPs)
chr6 (121-252)||(14927142-14927273)
chr6 (35-96)||(14929190-14929251)
[»] chr2 (1 HSPs)
chr2 (35-85)||(45048279-45048329)


Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 11504566 - 11504279
Alignment:
Q  1 cttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgattacga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||     
T  11504566 cttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacaaaggccccagtagtgcctcaaaccccggtgattacgg 11504467  T
Q  101 attttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11504466 attttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttca 11504367  T
Q  201 aaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactctgcagcactcaatttaccagccct 288  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  11504366 aaaaccaatatggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaactctgcagcactcaatttaccagccct 11504279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 11511960 - 11511673
Alignment:
Q  1 cttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgattacga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||     
T  11511960 cttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacaaaggccccagtagtgcctcaaaccccggtgattacgg 11511861  T
Q  101 attttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11511860 attttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttca 11511761  T
Q  201 aaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactctgcagcactcaatttaccagccct 288  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  11511760 aaaaccaatatggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaactctgcagcactcaatttaccagccct 11511673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 11519336 - 11519049
Alignment:
Q  1 cttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgattacga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||     
T  11519336 cttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacaaaggccccagtagtgcctcaaaccccggtgattacgg 11519237  T
Q  101 attttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11519236 attttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttca 11519137  T
Q  201 aaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactctgcagcactcaatttaccagccct 288  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  11519136 aaaaccaatatggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaactctgcagcactcaatttaccagccct 11519049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 11526741 - 11526454
Alignment:
Q  1 cttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgattacga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||     
T  11526741 cttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacaaaggccccagtagtgcctcaaaccccggtgattacgg 11526642  T
Q  101 attttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11526641 attttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttca 11526542  T
Q  201 aaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactctgcagcactcaatttaccagccct 288  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  11526541 aaaaccaatatggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaactctgcagcactcaatttaccagccct 11526454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 11534151 - 11533864
Alignment:
Q  1 cttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgattacga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  11534151 cttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacgaaggccccagtagtgcctcaaaccccggtgattacgg 11534052  T
Q  101 attttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttca 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11534051 attttcttgagtctctcaagatcatccctgagcttcctgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttca 11533952  T
Q  201 aaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactctgcagcactcaatttaccagccct 288  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||    
T  11533951 aaaaccaatatggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaattctgcagcactcaatttaccagccct 11533864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 11497239 - 11496952
Alignment:
Q  1 cttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgattacga 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  11497239 cttaacgcttctttgagacaccaacagtcagcctatagtcgtggtatgctgaccacgaacacgaaggccccagtagtgcctcaaaccccggtgattacgg 11497140  T
Q  101 attttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttca 200  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11497139 attttcttgagtctctcaggatcatccctcagcttcatgtcaagttgattggatacaagttgagagaatttgccatccttgtaatctttctttctgttca 11497040  T
Q  201 aaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactctgcagcactcaatttaccagccct 288  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  11497039 aaaaccaatctggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaactctgcagcactcaatttaccagccct 11496952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 11541568 - 11541281
Alignment:
Q  1 cttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgattacga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||     
T  11541568 cttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacgaaggccccagttgtgcctcaaaccccgatgattacgg 11541469  T
Q  101 attttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttca 200  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11541468 attttcttgagtctctcaagatcatccctgaatttcatgtcaagttgattggatacaacttgagaaaatttgccatccttgtaatctttctttctgttca 11541369  T
Q  201 aaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactctgcagcactcaatttaccagccct 288  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  11541368 aaaaccaatctggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaactctgcagcactcaatttaccagccct 11541281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1005 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: scaffold1005
Description:

Target: scaffold1005; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 2711 - 2424
Alignment:
Q  1 cttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgattacga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||     
T  2711 cttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacaaaggccccagtagtgcctcaaaccccggtgattacgg 2612  T
Q  101 attttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttca 200  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2611 attttcttgagtctctcaagatcatccctgaatttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttca 2512  T
Q  201 aaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactctgcagcactcaatttaccagccct 288  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||    
T  2511 aaaaccaatttggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaattctgcagcactcaatttaccagccct 2424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 35 - 288
Target Start/End: Complemental strand, 41556468 - 41556215
Alignment:
Q  35 gtagtcgtggtatgctgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgattacgaattttcttgagtctctcaagatcatccctgagct 134  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||| || || |||||||| || |||| ||||||||| | ||||||||| ||||    
T  41556468 gtagtcttggtatgctgaccacgaacacgaaggccccagtagtgcctcaatccacgatgattacggatcttctcgagtctctccaaatcatccctcagct 41556369  T
Q  135 tcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttcaaaaaccaatctggaagcttgaattgacgaggatt 234  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  41556368 tcatgtcaaattgattggatacaacttgagagaatttcccatccttgtaatccttctttctgttcaaaaaccaatctggaaccttgaattgacgaggatt 41556269  T
Q  235 cgcaaccactgtcataatattactcaactctgcagcactcaatttaccagccct 288  Q
    |||||||||| |||||||||||  ||||||||||||||| |||| |||||||||    
T  41556268 cgcaaccactatcataatattatccaactctgcagcacttaattcaccagccct 41556215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 104 - 288
Target Start/End: Complemental strand, 44179962 - 44179778
Alignment:
Q  104 ttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttcaaaa 203  Q
    |||||||||||||| | |||||| || | ||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||    
T  44179962 ttcttgagtctctccaaatcatctctcaacttcatgtcgagttgattggagacaacctgagagaatttcccatccttgtaatccttctttctgttcaaaa 44179863  T
Q  204 accaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactctgcagcactcaatttaccagccct 288  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||    
T  44179862 accaatctggaaccttaaattgacgaggattcgcaaccactgtcataatattatccaactctgcagcactcaattcaccagccct 44179778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 104 - 288
Target Start/End: Complemental strand, 44207093 - 44206909
Alignment:
Q  104 ttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttcaaaa 203  Q
    |||||||||||||| | |||||| || | ||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||    
T  44207093 ttcttgagtctctccaaatcatctctcaacttcatgtcgagttgattggagacaacctgagagaatttcccatccttgtaatccttctttctgttcaaaa 44206994  T
Q  204 accaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactctgcagcactcaatttaccagccct 288  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||    
T  44206993 accaatctggaaccttaaattgacgaggattcgcaaccactgtcataatattatccaactctgcagcactcaattcaccagccct 44206909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 44180889 - 44180824
Alignment:
Q  31 gcctgtagtcgtggtatgctgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgatt 96  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44180889 gcctgtagtcttggtatgctgaccacgaacacgaaggccccagtagtgcctcaaaccccggtgatt 44180824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 44208109 - 44208046
Alignment:
Q  35 gtagtcgtggtatgctgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgattac 98  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||| || |||||||    
T  44208109 gtagtcttggtatgctgaccacgaacacgaaggccccagtagtgcctcaaaccacgatgattac 44208046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 103 - 242
Target Start/End: Original strand, 4860380 - 4860519
Alignment:
Q  103 tttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttcaaa 202  Q
    ||||||||||||||| | || ||| || | ||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||| ||||| || ||||||    
T  4860380 tttcttgagtctctccaaattatctctcaacttcatgtcaagttggttggagacaacttgagaaaattttccatccttgtaatccttcttcctattcaaa 4860479  T
Q  203 aaccaatctggaagcttgaattgacgaggattcgcaacca 242  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  4860480 aaccaatctggaaccttgaattgacgaggattcgcaacca 4860519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 121 - 252
Target Start/End: Complemental strand, 14927273 - 14927142
Alignment:
Q  121 atcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttcaaaaaccaatctggaagcttg 220  Q
    ||||||||| | ||||||||| |||||||| || ||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| || | ||||    
T  14927273 atcatccctcaacttcatgtccagttgatttgaaacaacttgagaaaacttgccatccttgtaatccttctttctgttcaaaaaccaatcagggaccttg 14927174  T
Q  221 aattgacgaggattcgcaaccactgtcataat 252  Q
    ||||| | ||| || |||||||| ||||||||    
T  14927173 aattgcctagggttggcaaccacagtcataat 14927142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 14929251 - 14929190
Alignment:
Q  35 gtagtcgtggtatgctgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgatt 96  Q
    |||||| |||||||||| |||||||||||||| | |||||| || |||||||| ||||||||    
T  14929251 gtagtcttggtatgctgtccacgaacacgaagaccccagtaatgtctcaaacctcggtgatt 14929190  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 45048279 - 45048329
Alignment:
Q  35 gtagtcgtggtatgctgaccacgaacacgaaggcgccagtagtgcctcaaa 85  Q
    |||||| ||||||||||||||||| |||||||||  |||||||||||||||    
T  45048279 gtagtcttggtatgctgaccacgagcacgaaggccacagtagtgcctcaaa 45048329  T

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