View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7851_low_22 (Length: 272)
Name: NF7851_low_22
Description: NF7851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7851_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 28533187 - 28533069
Alignment:
| Q |
12 |
tgttgggaatgtatattcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcagcttgagttctctctccaccgtatccaaacggttcc |
111 |
Q |
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| T |
28533187 |
tgttgggaatgtatcttcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcaacttgagttctctctccaccgtatccaaacggttcc |
28533088 |
T |
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| Q |
112 |
tctccatcaccggccgcct |
130 |
Q |
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| T |
28533087 |
tctccatcaccggacgcct |
28533069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 128 - 272
Target Start/End: Complemental strand, 28533029 - 28532885
Alignment:
| Q |
128 |
cctacgtagcctcttcaaaaggttcacccatctcaattccctcaatctctctcgctatctcggtcacaacctcgacgaccttctctgccaaatctctcgt |
227 |
Q |
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| T |
28533029 |
cctacttagcctcttcaaaaggttcacccatctcaatttcctcgatctctctcgctatctaggtaacaacctcgacgaccttctctgccaaatctcagat |
28532930 |
T |
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| Q |
228 |
ttctcgtcgttcaaattcacttcactcaaactccccaacgttggt |
272 |
Q |
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| T |
28532929 |
ttcccgtcattcaaaatcatttcactcaaacttccaaacgttggt |
28532885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 51763081 - 51763191
Alignment:
| Q |
12 |
tgttgggaatgtatattcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcagcttgagttctctctccaccgtatccaaacggttcc |
111 |
Q |
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| T |
51763081 |
tgttgggaatctatcttcaaattcatcatcaacaatgatgatgacgaagaaaacaaccgtcgcaacttgaattctctctccatcgtttccaaacagttcc |
51763180 |
T |
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| Q |
112 |
tctccatcacc |
122 |
Q |
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| T |
51763181 |
tctccatcacc |
51763191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 6587982 - 6588056
Alignment:
| Q |
54 |
gacgaaaacaacaaccgtcgcagcttgagttctctctccaccgtatccaaacggttcctctccatcaccggccgc |
128 |
Q |
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| T |
6587982 |
gacgaaaacaacaaccgtcacagcatgatttctctctccgccgtatccaagcagttcctcgccatcaccgaccgc |
6588056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 256
Target Start/End: Original strand, 6588144 - 6588241
Alignment:
| Q |
159 |
ctcaattccctcaatctctctcgctatctcggtcacaacctcgacgaccttctctgccaaatctctcgtttctcgtcgttcaaattcacttcactcaa |
256 |
Q |
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| T |
6588144 |
ctcacttccctcaatctctcgcgatatagcggttatgacctcgacgaccttctttgccaaatctctcgtttcccaacattgaaaatcacttcactcaa |
6588241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1537255 - 1537299
Alignment:
| Q |
1 |
tacctgatgagtgttgggaatgtatattcagattcatcatcaacg |
45 |
Q |
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| T |
1537255 |
tacctgatgagtgttgggaatgtgtattcagattcctcaacaacg |
1537299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 1547377 - 1547426
Alignment:
| Q |
1 |
tacctgatgagtgttgggaatgtatattcagattcatcatcaacgacggt |
50 |
Q |
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| T |
1547377 |
tacctgacgagtgttgggaatctatcttcaaattcatcatcatcgacggt |
1547426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 53759971 - 53760058
Alignment:
| Q |
1 |
tacctgatgagtgttgggaatgtatattcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcagcttgagttctctctc |
91 |
Q |
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| T |
53759971 |
tacctgatgagtgctgggaatctatcttcaaactcgtcatcaacaac---aaggacaaaaacaacaaccgtcacaacttgaattctctctc |
53760058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 15091288 - 15091334
Alignment:
| Q |
1 |
tacctgatgagtgttgggaatgtatattcagattcatcatcaacgac |
47 |
Q |
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| T |
15091288 |
tacccgatgagtgttgggaatgcgtcttcagattcatcatcaacgac |
15091334 |
T |
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