View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7851_low_24 (Length: 270)
Name: NF7851_low_24
Description: NF7851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7851_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 13212065 - 13212316
Alignment:
| Q |
1 |
taatagcaagtgtccaaacggatcatggatagactatgataagatcgtaaaatttggattggtcctaacttaaccttacaaaattaacttgtatcgtgat |
100 |
Q |
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| T |
13212065 |
taatagcaagtgtccaaacggatcgtggatagactatgataagatcgtaaaatttggattggtcctaacttaaccttacaaaattaacttgtatcgtgat |
13212164 |
T |
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| Q |
101 |
gattgcctacttataaactcatattcgatccatatctcttttaatgtaggtatcttaacaactttaataatcgtcggtagtaagtacaaacctaccatta |
200 |
Q |
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| T |
13212165 |
gattgcctacttataaactcatattcgatccatatctcttttaatgtaggtatcttaacaactttaataatcgtcagtagtaagtacaaacctaccatta |
13212264 |
T |
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| Q |
201 |
atgcagtggattagaccacaatttggaaagtgaaaatctttgaaaccatgat |
252 |
Q |
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| T |
13212265 |
atgcagtggattagaccacaatttggaaagtgaaaatctttgaaaccatgat |
13212316 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 40571669 - 40571598
Alignment:
| Q |
21 |
gatcatggatagactatgataagatcgtaaaatttggattggtcctaacttaaccttacaaaattaacttgta |
93 |
Q |
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| T |
40571669 |
gatcaaggatagactttgataccatcttaaa-tttggattgggcctaactcaaccttacaaaaccaacttgta |
40571598 |
T |
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