View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7851_low_25 (Length: 268)

Name: NF7851_low_25
Description: NF7851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7851_low_25
NF7851_low_25
[»] chr7 (12 HSPs)
chr7 (12-265)||(23856682-23856935)
chr7 (13-268)||(23860721-23860976)
chr7 (12-268)||(23864267-23864523)
chr7 (12-268)||(23839863-23840118)
chr7 (12-268)||(23843587-23843843)
chr7 (36-112)||(23853287-23853363)
chr7 (10-136)||(23815642-23815768)
chr7 (36-112)||(23850896-23850972)
chr7 (36-112)||(23855810-23855886)
chr7 (36-139)||(23827314-23827417)
chr7 (10-134)||(23801011-23801135)
chr7 (10-137)||(23805770-23805897)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 265
Target Start/End: Complemental strand, 23856935 - 23856682
Alignment:
Q  12 gagaagaatgttgaaggaacaattgaggctctacaaattcttgagaatgagctgaagaacaagttctttggaggtgaggagattggaattgtggatattg 111  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23856935 gagaagaatgttgaaggaacaattgaggctctacagattcttgagaatgagttgaaggacaagttctttggaggtgaggagattggaattgtggatattg 23856836  T
Q  112 cagctgtgtacatagctttttggatccctttgattcaagacataacagggttgcaattgttgaatgctgaaaagtgtccaaaactttccaagtggagcca 211  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  23856835 cagctgtgtacatagctttttggatccctttgattcaagaaataacagggttgcaattgttgaatgctgaaaagtgtcccaaactttcgaagtggagcca 23856736  T
Q  212 agaatttctcaaccatccagttgttcaggaaaatatgcctcctagagaacctct 265  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  23856735 agaatttctcaaccatccaattgttaaggaaaatatgcctcctagagaacctct 23856682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 268
Target Start/End: Complemental strand, 23860976 - 23860721
Alignment:
Q  13 agaagaatgttgaaggaacaattgaggctctacaaattcttgagaatgagctgaagaacaagttctttggaggtgaggagattggaattgtggatattgc 112  Q
    ||||||||||||||| | |||  |||||||| || |||||||||||||||||||||||||||| |||||| || || ||||||    |||||||||||||    
T  23860976 agaagaatgttgaagaatcaaccgaggctctgcagattcttgagaatgagctgaagaacaagtactttgggggagaagagattaactttgtggatattgc 23860877  T
Q  113 agctgtgtacatagctttttggatccctttgattcaagacataacagggttgcaattgttgaatgctgaaaagtgtccaaaactttccaagtggagccaa 212  Q
     ||||||| |||||||||||||||||||||||||||||||||| | |  ||| ||||||| ||||||||||||| |||||| |||| ||| |||||||||    
T  23860876 tgctgtgttcatagctttttggatccctttgattcaagacatagctgaattgaaattgttcaatgctgaaaagtatccaaagctttacaaatggagccaa 23860777  T
Q  213 gaatttctcaaccatccagttgttcaggaaaatatgcctcctagagaacctctttt 268  Q
    ||||||||||||||||| | |||  ||||| || ||||| ||||||| ||||||||    
T  23860776 gaatttctcaaccatcctgctgtgaaggaacatgtgcctgctagagaccctctttt 23860721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 12 - 268
Target Start/End: Complemental strand, 23864523 - 23864267
Alignment:
Q  12 gagaagaatgttgaaggaacaattgaggctctacaaattcttgagaatgagctgaagaacaagttctttggaggtgaggagattggaattgtggatattg 111  Q
    ||||||||| |||||| | ||| ||  ||||| || ||||| ||||||||||||||| ||||||||||||| || |||||||||||  |||||||||||     
T  23864523 gagaagaatattgaagaatcaactggagctctgcagattctcgagaatgagctgaaggacaagttctttgggggagaggagattggttttgtggatattt 23864424  T
Q  112 cagctgtgtacatagctttttggatccctttgattcaagacataacagggttgcaattgttgaatgctgaaaagtgtccaaaactttccaagtggagcca 211  Q
    | ||||||| |||||||||||||||||||||| |||||||| ||| ||||||| ||| ||| | ||||||||||| |||||| |||| ||| ||||||||    
T  23864423 ctgctgtgttcatagctttttggatccctttgtttcaagacttaatagggttgaaatggttcactgctgaaaagtatccaaagctttacaaatggagcca 23864324  T
Q  212 agaatttctcaaccatccagttgttcaggaaaatatgcctcctagagaacctctttt 268  Q
    ||||||||||||||||||| ||||  |||| ||| |||||| |||||| ||||||||    
T  23864323 agaatttctcaaccatccaattgtgaaggagaatgtgcctcttagagaccctctttt 23864267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 268
Target Start/End: Complemental strand, 23840118 - 23839863
Alignment:
Q  12 gagaagaatgttgaaggaacaattgaggctctacaaattcttgagaatgagctgaagaacaagttctttggaggtgaggagattggaattgtggatattg 111  Q
    ||||||||||| |||| ||||| ||||||||| ||  ||||| ||||||||||||||   |||| ||||||||| || ||| ||    ||||||||||||    
T  23840118 gagaagaatgtcgaagaaacaactgaggctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagtttaactttgtggatattg 23840019  T
Q  112 cagctgtgtacatagctttttggatccctttgattcaagacataacagggttgcaattgttgaatgctgaaaagtgtccaaaactttccaagtggagcca 211  Q
    | ||||| | | |||| | | |||||||| |  |||||||||||| ||||||||||||||| |  |||||||||| |||||| |||| ||| ||||| ||    
T  23840018 ctgctgttttcgtagcatct-ggatccctctagttcaagacataatagggttgcaattgttcacagctgaaaagtttccaaagctttacaattggagtca 23839920  T
Q  212 agaatttctcaaccatccagttgttcaggaaaatatgcctcctagagaacctctttt 268  Q
    |||||||||  ||||||| |||||  |||||| ||| ||||| ||||| ||||||||    
T  23839919 agaatttcttgaccatcctgttgtgaaggaaactattcctccaagagagcctctttt 23839863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 268
Target Start/End: Complemental strand, 23843843 - 23843587
Alignment:
Q  12 gagaagaatgttgaaggaacaattgaggctctacaaattcttgagaatgagctgaagaacaagttctttggaggtgaggagattggaattgtggatattg 111  Q
    ||||||||| |||||| | |||  |||||||| ||  |||||||||||||||||||| |||||| ||||||||| || ||| ||    |||| |||||||    
T  23843843 gagaagaatattgaagaagcaaccgaggctcttcactttcttgagaatgagctgaaggacaagtactttggaggagaagagtttaactttgtcgatattg 23843744  T
Q  112 cagctgtgtacatagctttttggatccctttgattcaagacataacagggttgcaattgttgaatgctgaaaagtgtccaaaactttccaagtggagcca 211  Q
    | ||||| | | |||| |||||| ||||| |  ||||||||||||| | | |||||||||| |  ||||||||||  ||||| |||| ||| ||||| ||    
T  23843743 ctgctgttttcgtagcattttgggtccctctagttcaagacataaccgagctgcaattgttcacagctgaaaagttcccaaagctttacaattggagtca 23843644  T
Q  212 agaatttctcaaccatccagttgttcaggaaaatatgcctcctagagaacctctttt 268  Q
    |||||||||  ||||||| |||||  |||||| | | ||||||||||| ||||||||    
T  23843643 agaatttcttgaccatcctgttgtgaaggaaactcttcctcctagagagcctctttt 23843587  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 23853287 - 23853363
Alignment:
Q  36 gaggctctacaaattcttgagaatgagctgaagaacaagttctttggaggtgaggagattggaattgtggatattgc 112  Q
    |||||||| ||  |||||||||||||||||||| |||||||||||||||| ||||||||| |  |||||||||||||    
T  23853287 gaggctctgcagtttcttgagaatgagctgaaggacaagttctttggaggagaggagattagctttgtggatattgc 23853363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 23815768 - 23815642
Alignment:
Q  10 gtgagaagaatgttgaaggaacaattgaggctctacaaattcttgagaatgagctgaagaacaagttctttggaggtgaggagattggaattgtggatat 109  Q
    ||||||||| | |||| | |||||  |||||||| ||| |||||||||||||||| ||  |||| |||||||| || |||||||||||  |||| || ||    
T  23815768 gtgagaagagtattgaggaaacaaaagaggctcttcaatttcttgagaatgagctcaaagacaaattctttggtggggaggagattggctttgttgacat 23815669  T
Q  110 tgcagctgtgtacatagctttttggat 136  Q
    |||||| ||   |||||||||||||||    
T  23815668 tgcagccgtactcatagctttttggat 23815642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 23850896 - 23850972
Alignment:
Q  36 gaggctctacaaattcttgagaatgagctgaagaacaagttctttggaggtgaggagattggaattgtggatattgc 112  Q
    |||||||| ||  |||||||||||||||||||| |||||||||||||||| || || || ||  |||||||||||||    
T  23850896 gaggctctgcagtttcttgagaatgagctgaaggacaagttctttggaggagaagaaataggctttgtggatattgc 23850972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 23855810 - 23855886
Alignment:
Q  36 gaggctctacaaattcttgagaatgagctgaagaacaagttctttggaggtgaggagattggaattgtggatattgc 112  Q
    |||||||| ||  ||||||||||| |||||||  |||||||||||||||| || ||||||||  |||||||||||||    
T  23855810 gaggctctgcagtttcttgagaataagctgaatgacaagttctttggaggagaagagattggttttgtggatattgc 23855886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 139
Target Start/End: Complemental strand, 23827417 - 23827314
Alignment:
Q  36 gaggctctacaaattcttgagaatgagctgaagaacaagttctttggaggtgaggagattggaattgtggatattgcagctgtgtacatagctttttgga 135  Q
    |||||| | ||| |||||||||||||||| ||| | |  |||||||| || || |||||||||||||| |||||||| || || | |||||||||||||     
T  23827417 gaggcttttcaagttcttgagaatgagcttaaggagactttctttggtggagaagagattggaattgttgatattgctgcagttttcatagctttttggt 23827318  T
Q  136 tccc 139  Q
    ||||    
T  23827317 tccc 23827314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 134
Target Start/End: Complemental strand, 23801135 - 23801011
Alignment:
Q  10 gtgagaagaatgttgaaggaacaattgaggctctacaaattcttgagaatgagctgaagaacaagttctttggaggtgaggagattggaattgtggatat 109  Q
    ||||||||| | |||| | |||||  |||||||| ||  |||||||||||||||| ||| |||| |||||||| || ||||| |||||  |||| || ||    
T  23801135 gtgagaagagtattgaggaaacaaaagaggctcttcattttcttgagaatgagctcaaggacaaattctttggtggggaggatattggttttgttgacat 23801036  T
Q  110 tgcagctgtgtacatagctttttgg 134  Q
    ||| ||||||  |||| ||||||||    
T  23801035 tgctgctgtggtcatatctttttgg 23801011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 23805897 - 23805770
Alignment:
Q  10 gtgagaagaatgttgaaggaacaattgaggctctacaaattcttgagaatgagctgaagaacaagttctttggaggtgaggagattggaattgtggatat 109  Q
    ||||||||| | |||| | |||||  |||||||| | | |||||||||||||||| ||  |||| |||||||| || ||||| |||||  |||| || ||    
T  23805897 gtgagaagagtattgaggaaacaaaagaggctcttcgatttcttgagaatgagctcaaagacaaattctttggtggagaggatattggttttgttgacat 23805798  T
Q  110 tgcagctgtgtacatagctttttggatc 137  Q
    ||| ||||||  |||| |||||||||||    
T  23805797 tgctgctgtgatcatatctttttggatc 23805770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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