View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7851_low_26 (Length: 265)

Name: NF7851_low_26
Description: NF7851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7851_low_26
NF7851_low_26
[»] chr2 (7 HSPs)
chr2 (175-230)||(23757418-23757473)
chr2 (95-175)||(25219663-25219743)
chr2 (98-175)||(10202194-10202271)
chr2 (36-68)||(20571032-20571064)
chr2 (82-177)||(32517842-32517937)
chr2 (97-177)||(18741422-18741503)
chr2 (105-177)||(39417474-39417546)
[»] chr7 (1 HSPs)
chr7 (74-177)||(12645322-12645425)
[»] chr4 (4 HSPs)
chr4 (82-177)||(37340132-37340226)
chr4 (97-177)||(24870620-24870701)
chr4 (97-177)||(33530242-33530323)
chr4 (97-177)||(9696316-9696397)
[»] chr1 (6 HSPs)
chr1 (97-175)||(43837111-43837188)
chr1 (98-175)||(39787677-39787754)
chr1 (97-177)||(13116949-13117030)
chr1 (97-176)||(8312553-8312633)
chr1 (98-173)||(11797428-11797503)
chr1 (98-177)||(27078572-27078651)
[»] chr5 (3 HSPs)
chr5 (105-177)||(26526544-26526617)
chr5 (98-175)||(42559856-42559933)
chr5 (77-175)||(4429968-4430064)
[»] chr8 (1 HSPs)
chr8 (70-177)||(39709648-39709755)
[»] scaffold0242 (2 HSPs)
scaffold0242 (98-158)||(15082-15143)
scaffold0242 (98-158)||(23917-23978)


Alignment Details
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 23757418 - 23757473
Alignment:
Q  175 tgaacgcaccaattctccaatcctgctattaacgttgccaagatttcctctgcttt 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23757418 tgaacgcaccaattctccaatcctgctattaacgttgccaagatttcctctgcttt 23757473  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 175
Target Start/End: Complemental strand, 25219743 - 25219663
Alignment:
Q  95 taaaaaatgtcgaaattgtcaggccgaatgtaatgaccaggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    ||||||||||||||||||| |||||| | || |||||  | ||| ||||   |||||||||||||||||||||||||||||    
T  25219743 taaaaaatgtcgaaattgttaggccggacgtcatgacgggattcgaactcaggtacctccactttatatgtgtgagtttat 25219663  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 10202194 - 10202271
Alignment:
Q  98 aaaatgtcgaaattgtcaggccgaatgtaatgaccagg-ttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||||||||||||| |||||| |||  |||| | || ||| ||||||||||||||||| ||||||||||||||||||    
T  10202194 aaaatgtcgaaattgttaggccggatgctatgatcggggttcgaacttcagtacctccac-ttatatgtgtgagtttat 10202271  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 20571064 - 20571032
Alignment:
Q  36 atccatttcacccttaattaagatgtacaaatt 68  Q
    |||||||||||||||||||||||||||||||||    
T  20571064 atccatttcacccttaattaagatgtacaaatt 20571032  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 32517937 - 32517842
Alignment:
Q  82 ctagttcaactgttaaaaaatgtcgaaattgtcaggccgaatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    |||||||||||| |||||| |||||||||||| |||| | | || |||||| |||||| |||  | ||||||||||||| | |||||||||||||||    
T  32517937 ctagttcaactgataaaaa-tgtcgaaattgttaggctggacgtcatgaccgaggttcgaaccccggtacctccactttgtgtgtgtgagtttatga 32517842  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 18741503 - 18741422
Alignment:
Q  97 aaaaatgtcgaaattgtcaggccgaatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    ||||||| ||||||||| ||| ||||  | |||| | ||||||||||| | ||||||||||||| | |||||||||||||||    
T  18741503 aaaaatgccgaaattgttaggtcgaacatcatgatcgaggttcaaactccggtacctccactttgtgtgtgtgagtttatga 18741422  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 39417474 - 39417546
Alignment:
Q  105 cgaaattgtcaggccgaatgtaatgaccaggttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    ||||||||| |||||| |||| |||||  ||||| |||| |  || ||||||||||| |||||||||||||||    
T  39417474 cgaaattgttaggccggatgtcatgacggggttcgaactccgatatctccactttatgtgtgtgagtttatga 39417546  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 177
Target Start/End: Complemental strand, 12645425 - 12645322
Alignment:
Q  74 cataaattctagttcaactgttaaaaaatgtcgaaattgtcaggccgaatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtt 172  Q
    ||||| ||||||||||||||  ||||| |||||||||||| |||||| | ||||||||| |||||| |||  | ||||||||||||||| |||||| |||    
T  12645425 cataagttctagttcaactgccaaaaa-tgtcgaaattgttaggccggacgtaatgaccgaggttcgaacccctgtacctccactttatgtgtgtgggtt 12645327  T
Q  173 tatga 177  Q
    |||||    
T  12645326 tatga 12645322  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 37340226 - 37340132
Alignment:
Q  82 ctagttcaactgttaaaaaatgtcgaaattgtcaggccgaatgtaatgaccaggttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    |||||||||||| |||||| |||||||||||| |||||||| || |||| ||||||| |||  | ||| ||||||||| | |||||||||||||||    
T  37340226 ctagttcaactgataaaaa-tgtcgaaattgttaggccgaacgtcatgatcaggttcgaaccacggtatctccactttgtgtgtgtgagtttatga 37340132  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 24870620 - 24870701
Alignment:
Q  97 aaaaatgtcgaaattgtcaggccgaatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    ||||||| ||||||||| |||||| | ||||||||| |||||| ||| || ||||||||||||||  |||||||||||||||    
T  24870620 aaaaatgccgaaattgttaggccggacgtaatgaccgaggttcgaacctcggtacctccactttacgtgtgtgagtttatga 24870701  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 33530242 - 33530323
Alignment:
Q  97 aaaaatgtcgaaattgtcaggccgaatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    |||||||| |||||||| |||||| | || |||||| |||||||||| |||||||||| ||||| | |||||||||||||||    
T  33530242 aaaaatgttgaaattgttaggccggacgtcatgaccgaggttcaaacctcagtacctctactttgtgtgtgtgagtttatga 33530323  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 9696397 - 9696316
Alignment:
Q  97 aaaaatgtcgaaattgtcaggccgaatgtaatgaccagg-ttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    ||||||||||||||||| ||| |||| || |||| | || ||| ||| || ||||||||||||||| ||||| |||||||||    
T  9696397 aaaaatgtcgaaattgttaggtcgaacgttatgatcggggttcgaacctcggtacctccactttatgtgtgtaagtttatga 9696316  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 43837111 - 43837188
Alignment:
Q  97 aaaaatgtcgaaattgtcaggccgaatgtaatgaccaggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||||||| |||||| |||||| |||| ||||||||||||||||  | ||||||||||||||| ||||| |||||||    
T  43837111 aaaaatgtcggaattgttaggccggatgttatgaccaggttcaaac-ccggtacctccactttatgtgtgtaagtttat 43837188  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 39787754 - 39787677
Alignment:
Q  98 aaaatgtcgaaattgtcaggccgaatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||||||||||||| || |||||||  ||||||  ||||| |||| | |||||||||| ||||||||||||||||||    
T  39787754 aaaatgtcgaaattgttagaccgaatgccatgaccggggttcgaactccggtacctccac-ttatatgtgtgagtttat 39787677  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 13116949 - 13117030
Alignment:
Q  97 aaaaatgtcgaaattgtcaggccgaatgtaatgacca-ggttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    ||||||||||||||||| |||| | | || ||||||| ||||| |||| | |||||| |||||| | |||||||||||||||    
T  13116949 aaaaatgtcgaaattgttaggctggacgtcatgaccaaggttcgaactccggtaccttcactttgtgtgtgtgagtttatga 13117030  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 8312633 - 8312553
Alignment:
Q  97 aaaaatgtcgaaattgtcaggccgaatgtaatga-ccaggttcaaacttcagtacctccactttatatgtgtgagtttatg 176  Q
    ||||||||||||||||| |||||||| || |||| | |||||| |||  | ||||||||||||| | || |||||||||||    
T  8312633 aaaaatgtcgaaattgttaggccgaacgttatgatcgaggttcgaaccccggtacctccactttgtgtgagtgagtttatg 8312553  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 11797503 - 11797428
Alignment:
Q  98 aaaatgtcgaaattgtcaggccgaatgtaatgaccagg-ttcaaacttcagtacctccactttatatgtgtgagttt 173  Q
    |||||||||||||||| ||||||||||| |||||| || ||| ||| |  |||||||||| |||| |||||||||||    
T  11797503 aaaatgtcgaaattgttaggccgaatgtcatgaccgggattcgaacattggtacctccac-ttatgtgtgtgagttt 11797428  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 27078572 - 27078651
Alignment:
Q  98 aaaatgtcgaaattgtcaggccgaatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    |||||||||||||||| |||||| |||| ||||||  ||||| |||  | |||||||||| |||| |||||||||||||||    
T  27078572 aaaatgtcgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctccac-ttatgtgtgtgagtttatga 27078651  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 26526544 - 26526617
Alignment:
Q  105 cgaaattgtcaggccgaatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    ||||||||| |||||||| || |||||| |||||| |||| | ||||||||||||||| |||||||||||||||    
T  26526544 cgaaattgttaggccgaacgtcatgaccgaggttcgaactccggtacctccactttatgtgtgtgagtttatga 26526617  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 42559933 - 42559856
Alignment:
Q  98 aaaatgtcgaaattgtcaggccgaatgtaatga-ccaggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||||||||||||| |||||| ||||||||| | ||||||||| | | |||||||||| |||| |||||||||||||    
T  42559933 aaaatgtcgaaattgttaggccggatgtaatgatcgaggttcaaattccggtacctccac-ttatgtgtgtgagtttat 42559856  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 4430064 - 4429968
Alignment:
Q  77 aaattctagttcaactgttaaaaaatgtcgaaattgtcaggccgaatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    ||||||||| ||||||| |||||  |||||||||||| |||||| |||| ||||||  |||||||||  |  ||||||||| |||| |||||||||||||    
T  4430064 aaattctagctcaactggtaaaa--tgtcgaaattgttaggccggatgtcatgaccggggttcaaaccccgatacctccac-ttatgtgtgtgagtttat 4429968  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 177
Target Start/End: Complemental strand, 39709755 - 39709648
Alignment:
Q  70 gtcccataaattctagttcaactgttaaaaaatgtcgaaattgtcaggccgaatgtaatgaccagg-ttcaaacttcagtacctccactttatatgtgtg 168  Q
    ||||||||| |||||| ||||||| |||||| |||||||||||| || ||| | ||  ||||  || ||||||||    |||||||||||||||||||||    
T  39709755 gtcccataagttctagctcaactgctaaaaa-tgtcgaaattgttagaccggacgtcgtgactggggttcaaactctgatacctccactttatatgtgtg 39709657  T
Q  169 agtttatga 177  Q
    |||||||||    
T  39709656 agtttatga 39709648  T

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Target: scaffold0242 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 15082 - 15143
Alignment:
Q  98 aaaatgtcgaaattgtcaggccgaatgtaatgacc-aggttcaaacttcagtacctccactt 158  Q
    |||||| ||||||||| ||||||||||| |||||| |||||| ||| || ||||||||||||    
T  15082 aaaatgccgaaattgttaggccgaatgtcatgaccgaggttcgaacctctgtacctccactt 15143  T

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Target: scaffold0242; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 23917 - 23978
Alignment:
Q  98 aaaatgtcgaaattgtcaggccgaatgtaatgacc-aggttcaaacttcagtacctccactt 158  Q
    |||||| ||||||||| ||||||||||| |||||| |||||| ||| || ||||||||||||    
T  23917 aaaatgccgaaattgttaggccgaatgtcatgaccgaggttcgaacctctgtacctccactt 23978  T

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