View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7851_low_28 (Length: 259)
Name: NF7851_low_28
Description: NF7851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7851_low_28 |
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| [»] chr6 (3 HSPs) |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 31938797 - 31938539
Alignment:
| Q |
1 |
tcatttttaagccaagaatattcaggccctggaattgtatgaatgaatgttcatacaactgatgacattattgatcatgatttaatattcacatttcggt |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31938797 |
tcatttttaagccaagaatattcaggccatggaattgtatgaatgaatgttcgtacagctgatgacattattgatcatgatttaatattcacatttcggt |
31938698 |
T |
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| Q |
101 |
gatgattttgcaagatttgatttatctgataacaaaaatatatggcaaatgggaatgtttaaaaacagtgattgattgaatgacacttcaactcctatac |
200 |
Q |
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| T |
31938697 |
gatgattttgcaagatttgatttatctgataacaaaaaaatatggcaaatgggaatgtttaaaaacagtgtttgattgaatgacacttcaactcctatac |
31938598 |
T |
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| Q |
201 |
tatttttcttgctaaattgaaagtattaagtttggtttaggaaaacagaacacaagctc |
259 |
Q |
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| T |
31938597 |
tatttttcttgttaaattgaaagtattaagattggtttaggaaaacagaacacaagctc |
31938539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 13535049 - 13534969
Alignment:
| Q |
30 |
tggaattgtatgaatgaatgttcatacaactgatgacattattgatcatgatttaatattcacatttcggtgatgattttg |
110 |
Q |
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| T |
13535049 |
tggaattgtatgattgaatgtttgtacaattgatgacattatttataatgatttatgattcacactttggtgatgattttg |
13534969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 32671582 - 32671548
Alignment:
| Q |
17 |
aatattcaggccctggaattgtatgaatgaatgtt |
51 |
Q |
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| T |
32671582 |
aatattcaggccctggaattgtatgaatgaatgtt |
32671548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 9389153 - 9388971
Alignment:
| Q |
1 |
tcatttttaagccaagaatattcaggccctggaattgtatgaatgaatgttcatacaactgatgacattattgatcatgatttaatattcacatttcggt |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
9389153 |
tcatttttaagccaagaatattcaagccctggaattgtatgaatgaatgtttgtacaactgatgacattatttataatgatttaatattcacatttcggt |
9389054 |
T |
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| Q |
101 |
gatgattttgcaagatttgatttatctgataacaaaaatatatggcaaatgggaatgttt-aaaaacagtgattgattgaatgacactt |
188 |
Q |
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| T |
9389053 |
gatgattttgcaag-----atttatctgaaaacaaaca-gtatggcaaatagaaatgtttgaaaaactgtgattgatttaatgacactt |
9388971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 19810358 - 19810430
Alignment:
| Q |
21 |
ttcaggccctggaattgtatgaatgaatgttcatacaactgatgacattattgatcatgatttaatattcaca |
93 |
Q |
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| T |
19810358 |
ttcaggccctggaattgtatgattgaatgtttgtacaattgatgatattatttataatgacttaagattcaca |
19810430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 1336766 - 1336695
Alignment:
| Q |
188 |
tcaactcctatactatttttcttgctaaattgaaagtattaagtttggtttaggaaaacagaacacaagctc |
259 |
Q |
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| T |
1336766 |
tcaattcctatactatttgtcttgttaaattgaaagtattaagtttggtttaggaaaacaaaacacaagctc |
1336695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 1336954 - 1336890
Alignment:
| Q |
1 |
tcatttttaagccaagaatattcaggccctggaattgtatgaatgaatgttcatacaactgatga |
65 |
Q |
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| T |
1336954 |
tcatttttaagccaataatattcagggcctggaattgtatgaatgaatgttcctacaactgatga |
1336890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 1336864 - 1336816
Alignment:
| Q |
140 |
atatggcaaatgggaatgtttaaaaacagtgattgattgaatgacactt |
188 |
Q |
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| T |
1336864 |
atatggcaaatggaaatgtttaaaaactatgattgatttactgacactt |
1336816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 5639053 - 5638984
Alignment:
| Q |
1 |
tcatttttaagccaagaatattcaggccctggaattgtatgaatgaatgttcatacaactgatgacatta |
70 |
Q |
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| T |
5639053 |
tcatttttaagccaagagcattcaggctctggaattgtatgaatggatgtttgttcaattgatgacatta |
5638984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 118
Target Start/End: Complemental strand, 5638983 - 5638949
Alignment:
| Q |
84 |
aatattcacatttcggtgatgattttgcaagattt |
118 |
Q |
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| T |
5638983 |
aatattcacacttcggtgatgattttgcaagattt |
5638949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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