View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7851_low_29 (Length: 254)

Name: NF7851_low_29
Description: NF7851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7851_low_29
NF7851_low_29
[»] chr8 (10 HSPs)
chr8 (1-130)||(5005708-5005838)
chr8 (1-130)||(5014755-5014885)
chr8 (69-129)||(3872286-3872346)
chr8 (65-130)||(12887721-12887786)
chr8 (69-130)||(17863466-17863527)
chr8 (64-130)||(12888239-12888305)
chr8 (87-132)||(32564505-32564550)
chr8 (76-131)||(3870767-3870822)
chr8 (87-130)||(32565652-32565695)
chr8 (77-131)||(17864723-17864777)
[»] chr4 (10 HSPs)
chr4 (1-130)||(41774644-41774774)
chr4 (1-130)||(41780184-41780314)
chr4 (8-132)||(8480886-8481011)
chr4 (69-131)||(52189185-52189247)
chr4 (62-126)||(23545342-23545406)
chr4 (8-129)||(8479652-8479775)
chr4 (87-132)||(30829925-30829970)
chr4 (87-132)||(52190387-52190432)
chr4 (69-117)||(31409326-31409374)
chr4 (69-130)||(31410610-31410671)
[»] chr2 (10 HSPs)
chr2 (1-130)||(35298556-35298686)
chr2 (1-131)||(35306040-35306171)
chr2 (63-131)||(31622099-31622167)
chr2 (62-130)||(31620525-31620593)
chr2 (63-131)||(36669149-36669217)
chr2 (65-132)||(31621108-31621175)
chr2 (69-130)||(40894871-40894932)
chr2 (76-127)||(4755043-4755094)
chr2 (65-132)||(36666791-36666858)
chr2 (87-132)||(4753526-4753571)
[»] chr3 (10 HSPs)
chr3 (1-130)||(18912548-18912678)
chr3 (1-130)||(18939784-18939915)
chr3 (69-130)||(9099560-9099621)
chr3 (63-130)||(20997633-20997700)
chr3 (87-132)||(36164594-36164639)
chr3 (78-130)||(19801786-19801838)
chr3 (62-130)||(11137912-11137980)
chr3 (69-129)||(37463680-37463740)
chr3 (87-131)||(37465006-37465050)
chr3 (87-130)||(36163383-36163426)
[»] chr1 (11 HSPs)
chr1 (62-132)||(36573960-36574030)
chr1 (62-130)||(26529508-26529576)
chr1 (62-130)||(26531083-26531151)
chr1 (65-132)||(26530500-26530567)
chr1 (62-132)||(36575530-36575600)
chr1 (65-132)||(36574954-36575021)
chr1 (69-130)||(35062564-35062625)
chr1 (131-169)||(40908503-40908541)
chr1 (8-130)||(49919639-49919762)
chr1 (99-131)||(35063652-35063684)
chr1 (89-133)||(49917386-49917430)
[»] chr5 (2 HSPs)
chr5 (62-129)||(16727813-16727880)
chr5 (99-130)||(38921455-38921486)
[»] chr7 (9 HSPs)
chr7 (68-130)||(45291952-45292014)
chr7 (1-129)||(40601751-40601882)
chr7 (166-236)||(37748591-37748661)
chr7 (68-130)||(38516620-38516682)
chr7 (87-130)||(45296096-45296139)
chr7 (1-131)||(40600710-40600843)
chr7 (8-49)||(33061639-33061680)
chr7 (69-130)||(38517751-38517812)
chr7 (69-128)||(42537718-42537777)
[»] chr6 (9 HSPs)
chr6 (68-132)||(9448765-9448829)
chr6 (87-132)||(18193023-18193068)
chr6 (87-130)||(11020406-11020449)
chr6 (87-132)||(226119-226164)
chr6 (87-130)||(18191746-18191789)
chr6 (3-53)||(227156-227206)
chr6 (69-130)||(9447607-9447668)
chr6 (91-131)||(30758894-30758934)
chr6 (87-129)||(11020178-11020220)
[»] scaffold0115 (4 HSPs)
scaffold0115 (76-130)||(6087-6141)
scaffold0115 (76-130)||(13827-13881)
scaffold0115 (8-130)||(4336-4459)
scaffold0115 (8-130)||(12076-12199)


Alignment Details
Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 5005838 - 5005708
Alignment:
Q  1 cgctcacttaacgttttggatcggaatgactaacggaagacactttcggggagnnnnnnn-gcgttttcttgattcagggacgtggttgatagcgaggta 99  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||        |||||||||||||||||||||||||||||||||||||||    
T  5005838 cgctcagttaacgttttggatcggaatgactaacggaagacactttcgaggagttttttttgcgttttcttgattcagggacgtggttgatagcgaggta 5005739  T
Q  100 cactttcagggacccaaatgagggtttactc 130  Q
    |||||||||||||||||||||||||||||||    
T  5005738 cactttcagggacccaaatgagggtttactc 5005708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 5014755 - 5014885
Alignment:
Q  1 cgctcacttaacgttttggatcggaatgactaacggaagacactttcggggagnnnnnnn-gcgttttcttgattcagggacgtggttgatagcgaggta 99  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||        |||||||||||||||| ||||||||||||||||||||||    
T  5014755 cgctcagttaacgttttggatcggaatgactaacggaagacactttcgaggagttttttttgcgttttcttgattcaaggacgtggttgatagcgaggta 5014854  T
Q  100 cactttcagggacccaaatgagggtttactc 130  Q
    |||||||||||||||||||||||||||||||    
T  5014855 cactttcagggacccaaatgagggtttactc 5014885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 3872286 - 3872346
Alignment:
Q  69 ttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttact 129  Q
    ||||| ||||||||||| |||||||||||| |||||||||||||||||| |||||||||||    
T  3872286 ttgatacagggacgtggctgatagcgaggtgcactttcagggacccaaacgagggtttact 3872346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 12887721 - 12887786
Alignment:
Q  65 tttcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 130  Q
    ||||||||| ||||||  ||  |||| |||||||||||||||||||||||||||||||||||||||    
T  12887721 tttcttgatccagggatatgtctgatcgcgaggtacactttcagggacccaaatgagggtttactc 12887786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 17863527 - 17863466
Alignment:
Q  69 ttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 130  Q
    ||||| || ||| |||| |||||||||||| |||||||||||||||||||||||||||||||    
T  17863527 ttgatccaaggatgtggctgatagcgaggtgcactttcagggacccaaatgagggtttactc 17863466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 12888239 - 12888305
Alignment:
Q  64 ttttcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 130  Q
    ||||||||||   ||||||||  ||||||||||||||| |||||||||| ||||||||| |||||||    
T  12888239 ttttcttgatcttgggacgtgtctgatagcgaggtacaatttcagggactcaaatgaggatttactc 12888305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 32564550 - 32564505
Alignment:
Q  87 tgatagcgaggtacactttcagggacccaaatgagggtttactctt 132  Q
    ||||||||||| ||||||||| ||||||||||||||||||| ||||    
T  32564550 tgatagcgagggacactttcaaggacccaaatgagggtttattctt 32564505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 3870822 - 3870767
Alignment:
Q  76 agggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactct 131  Q
    |||||||||| |||||||||  | || |||||||||||||| ||||||||||||||    
T  3870822 agggacgtggctgatagcgaaatgcattttcagggacccaagtgagggtttactct 3870767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 130
Target Start/End: Original strand, 32565652 - 32565695
Alignment:
Q  87 tgatagcgaggtacactttcagggacccaaatgagggtttactc 130  Q
    ||||||||||| ||||||||||||||| ||| ||||||||||||    
T  32565652 tgatagcgagggacactttcagggacctaaacgagggtttactc 32565695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 17864723 - 17864777
Alignment:
Q  77 gggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactct 131  Q
    |||| |||| |||||||||| | |||||||| ||| |||||||||||||||||||    
T  17864723 gggatgtggctgatagcgagatgcactttcaaggaaccaaatgagggtttactct 17864777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 41774774 - 41774644
Alignment:
Q  1 cgctcacttaacgttttggatcggaatgactaacggaagacactttcggggagnnnnnnn-gcgttttcttgattcagggacgtggttgatagcgaggta 99  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  41774774 cgctcagttaacgttttggatcggaatgactaacggaagacactttcggggagttttttttgcgttttcttgattcagggacgtggttgatagcgaggta 41774675  T
Q  100 cactttcagggacccaaatgagggtttactc 130  Q
    |||||||||||||||||||||| ||||||||    
T  41774674 cactttcagggacccaaatgagagtttactc 41774644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 41780184 - 41780314
Alignment:
Q  1 cgctcacttaacgttttggatcggaatgactaacggaagacactttcggggagnnnnnnn-gcgttttcttgattcagggacgtggttgatagcgaggta 99  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||        |||||||||||||||||| ||||||||||||||||||||    
T  41780184 cgctcagttaacgttttggatcggaatgactaacggaagacactttcgaggagttttttttgcgttttcttgattcaggaacgtggttgatagcgaggta 41780283  T
Q  100 cactttcagggacccaaatgagggtttactc 130  Q
    ||||||||| |||||||||||||||||||||    
T  41780284 cactttcagagacccaaatgagggtttactc 41780314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 8480886 - 8481011
Alignment:
Q  8 ttaacgttttggatcggaatgactaacggaagacactttcggggagnnnnnnn-gcgttttcttgattcagggacgtggttgatagcgaggtacactttc 106  Q
    |||||||||||||| |||||||||||||||||| ||||| ||||||        ||||||  ||||| ||||||||||  |||||||||| |||||||||    
T  8480886 ttaacgttttggatgggaatgactaacggaagagactttgggggagtttttggtgcgtttcattgatccagggacgtgactgatagcgagatacactttc 8480985  T
Q  107 agggacccaaatgagggtttactctt 132  Q
    |||||| |||||||| ||||| ||||    
T  8480986 agggactcaaatgagagtttattctt 8481011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 52189247 - 52189185
Alignment:
Q  69 ttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactct 131  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  52189247 ttgatccagggatgtggctgatagcgaggtgcactttcagggacccaaatgagggtttactct 52189185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 23545342 - 23545406
Alignment:
Q  62 cgttttcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggttt 126  Q
    |||||||||||||||| ||||||  ||||||| ||||||||||||| |||| |||||||||||||    
T  23545342 cgttttcttgattcagagacgtgtctgatagcaaggtacactttcaaggactcaaatgagggttt 23545406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 8479775 - 8479652
Alignment:
Q  8 ttaacgttttggatcggaatgactaacggaagacactttcggggagnnnnnnng--cgttttcttgattcagggacgtggttgatagcgaggtacacttt 105  Q
    ||||| |||||||| | |||||||||||||||| ||||| ||||||       |  |||| | ||||| |||| |||||| ||||||| || ||||||||    
T  8479775 ttaacattttggatggaaatgactaacggaagagactttgggggaggtttttggtgcgttgtattgatccaggaacgtggctgatagcaagatacacttt 8479676  T
Q  106 cagggacccaaatgagggtttact 129  Q
    ||||||||||||||||| ||||||    
T  8479675 cagggacccaaatgaggatttact 8479652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 30829970 - 30829925
Alignment:
Q  87 tgatagcgaggtacactttcagggacccaaatgagggtttactctt 132  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||    
T  30829970 tgatagcgagcaacactttcagggacccaaatgagggtttactctt 30829925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 52190387 - 52190432
Alignment:
Q  87 tgatagcgaggtacactttcagggacccaaatgagggtttactctt 132  Q
    |||||||||| | |||||||||||||||||||||||||||||||||    
T  52190387 tgatagcgagatgcactttcagggacccaaatgagggtttactctt 52190432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 31409374 - 31409326
Alignment:
Q  69 ttgattcagggacgtggttgatagcgaggtacactttcagggacccaaa 117  Q
    ||||| || ||||||||||||||||||||| ||||||||||||||||||    
T  31409374 ttgatccaaggacgtggttgatagcgaggtgcactttcagggacccaaa 31409326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 31410610 - 31410671
Alignment:
Q  69 ttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 130  Q
    |||||||||| |||||  |||||||||||| |||||||||| ||| |||| |||||||||||    
T  31410610 ttgattcaggaacgtgtctgatagcgaggtgcactttcaggaacctaaataagggtttactc 31410671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 35298686 - 35298556
Alignment:
Q  1 cgctcacttaacgttttggatcggaatgactaacggaagacactttcggggagnnnnnnn-gcgttttcttgattcagggacgtggttgatagcgaggta 99  Q
    |||||| |||||||||||||| ||||||||||||| |||| ||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  35298686 cgctcagttaacgttttggatgggaatgactaacgaaagagactttcggggagttttttttgcgttttcttgattcagggacgtggttgatagcgaggta 35298587  T
Q  100 cactttcagggacccaaatgagggtttactc 130  Q
    |||||||||| ||||||||||||||||||||    
T  35298586 cactttcaggaacccaaatgagggtttactc 35298556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 35306040 - 35306171
Alignment:
Q  1 cgctcacttaacgttttggatcggaatgactaacggaagacactttcggggagnnnnnnng-cgttttcttgattcagggacgtggttgatagcgaggta 99  Q
    |||||| ||||||||||||||  ||||||||||| ||||| ||||||||||||         |||||||||||||||||||| || ||||||||||||||    
T  35306040 cgctcagttaacgttttggatgagaatgactaacagaagagactttcggggagtttttttttcgttttcttgattcagggacatgtttgatagcgaggta 35306139  T
Q  100 cactttcagggacccaaatgagggtttactct 131  Q
    |||||||||||||| |||||||||||||||||    
T  35306140 cactttcagggacctaaatgagggtttactct 35306171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 31622099 - 31622167
Alignment:
Q  63 gttttcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactct 131  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  31622099 gttttcttgattcagggacgtggttgataacgaggtacactttcagggacccaaataagggtttactct 31622167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 31620593 - 31620525
Alignment:
Q  62 cgttttcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 130  Q
    ||||||||||||||| ||||||   |||||||||||||||||||||||||| |||||||||||||||||    
T  31620593 cgttttcttgattcaaggacgtatctgatagcgaggtacactttcagggactcaaatgagggtttactc 31620525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 36669149 - 36669217
Alignment:
Q  63 gttttcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactct 131  Q
    ||||||||||||||||||||||| |||||||||||| |||||||| ||| |||||| ||||||||||||    
T  36669149 gttttcttgattcagggacgtggctgatagcgaggtgcactttcatggatccaaattagggtttactct 36669217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 31621108 - 31621175
Alignment:
Q  65 tttcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactctt 132  Q
    ||||||||| ||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||    
T  31621108 tttcttgatccagggacatgtttgatagcgaggtacacttttagggacccaaatgaaggtttactctt 31621175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 40894871 - 40894932
Alignment:
Q  69 ttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 130  Q
    ||||| |||||||||   ||||||||||||||||||| ||||| ||||||||||||||||||    
T  40894871 ttgatccagggacgtacctgatagcgaggtacacttttagggatccaaatgagggtttactc 40894932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 4755043 - 4755094
Alignment:
Q  76 agggacgtggttgatagcgaggtacactttcagggacccaaatgagggttta 127  Q
    |||||||||  ||||||||||| |||||||||| ||||||||||||||||||    
T  4755043 agggacgtgtctgatagcgagggacactttcagagacccaaatgagggttta 4755094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 36666791 - 36666858
Alignment:
Q  65 tttcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactctt 132  Q
    ||||||||| ||||||| |  |||||||||||||||||||| |||||||||||| | | |||||||||    
T  36666791 tttcttgatccagggacatatttgatagcgaggtacacttttagggacccaaataaagctttactctt 36666858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 4753571 - 4753526
Alignment:
Q  87 tgatagcgaggtacactttcagggacccaaatgagggtttactctt 132  Q
    ||||||||||  ||||||||||||||||||| ||||||||||||||    
T  4753571 tgatagcgagagacactttcagggacccaaacgagggtttactctt 4753526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 18912678 - 18912548
Alignment:
Q  1 cgctcacttaacgttttggatcggaatgactaacggaagacactttcggggagnnnnnnn-gcgttttcttgattcagggacgtggttgatagcgaggta 99  Q
    |||||| |||||||||||||| |||||||||||||||||| |||||| |||||        ||||||||||||||||||||| ||||| |||| ||||||    
T  18912678 cgctcagttaacgttttggatgggaatgactaacggaagagactttcagggagttttttttgcgttttcttgattcagggacatggttaatagtgaggta 18912579  T
Q  100 cactttcagggacccaaatgagggtttactc 130  Q
    |||||||||||||||||||||||||||||||    
T  18912578 cactttcagggacccaaatgagggtttactc 18912548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 18939784 - 18939915
Alignment:
Q  1 cgctcacttaacgttttggatcgg-aatgactaacggaagacactttcggggagnnnnnnn-gcgttttcttgattcagggacgtggttgatagcgaggt 98  Q
    |||||| |||||||||||||| || |||||||||||||||| ||||||||||||        |||||||||||| | |||||||||||||||||||| ||    
T  18939784 cgctcagttaacgttttggatgggtaatgactaacggaagagactttcggggagtttgttttgcgttttcttgacttagggacgtggttgatagcgaagt 18939883  T
Q  99 acactttcagggacccaaatgagggtttactc 130  Q
    ||||||||||||||||||||||||||||||||    
T  18939884 acactttcagggacccaaatgagggtttactc 18939915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 9099621 - 9099560
Alignment:
Q  69 ttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 130  Q
    |||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  9099621 ttgattcagggatgtgcttgatagcgaggtacactttaagggacccaaatgagggtttactc 9099560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 20997700 - 20997633
Alignment:
Q  63 gttttcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 130  Q
    ||||| ||||| | |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  20997700 gttttattgatcctgggatgtgcttgatagcgaggtacattttcagggacccaaatgagggtttactc 20997633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 36164594 - 36164639
Alignment:
Q  87 tgatagcgaggtacactttcagggacccaaatgagggtttactctt 132  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  36164594 tgatagcgagggacactttcagggacccaaatgagggtttactctt 36164639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 19801838 - 19801786
Alignment:
Q  78 ggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 130  Q
    |||||| | |||||||||||||||||||||||||||  |||||||||||||||    
T  19801838 ggacgtagctgatagcgaggtacactttcagggaccggaatgagggtttactc 19801786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 11137980 - 11137912
Alignment:
Q  62 cgttttcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 130  Q
    ||||||| |||| |||||| |||  ||||||||||||||| ||| || || ||||||||||||||||||    
T  11137980 cgttttcatgatccagggatgtgtctgatagcgaggtacatttttagagaaccaaatgagggtttactc 11137912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 37463740 - 37463680
Alignment:
Q  69 ttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttact 129  Q
    ||||| |||||||||| |||||||||||  ||||||||||| ||||||  |||||||||||    
T  37463740 ttgatccagggacgtgcttgatagcgagaaacactttcaggaacccaagcgagggtttact 37463680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 37465006 - 37465050
Alignment:
Q  87 tgatagcgaggtacactttcagggacccaaatgagggtttactct 131  Q
    ||||||||||  |||||||||||||||||||| ||||||||||||    
T  37465006 tgatagcgagcaacactttcagggacccaaattagggtttactct 37465050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 36163426 - 36163383
Alignment:
Q  87 tgatagcgaggtacactttcagggacccaaatgagggtttactc 130  Q
    ||||||||||| ||||||||||||| |||||||| |||||||||    
T  36163426 tgatagcgagggacactttcagggatccaaatgaaggtttactc 36163383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 36574030 - 36573960
Alignment:
Q  62 cgttttcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactctt 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  36574030 cgttttcttgattcagggacgtggttgatagcgaggtacactttcagggacctaaatgagtgtttactctt 36573960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 26529576 - 26529508
Alignment:
Q  62 cgttttcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 130  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  26529576 cgttttcttgattcagggacgtgtctgatagcgaggtacactttcagggacccaaatgagggtttactc 26529508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 26531083 - 26531151
Alignment:
Q  62 cgttttcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 130  Q
    |||||||||||||||||||||||  | ||||||||||||||||||||||||| ||||||||||||||||    
T  26531083 cgttttcttgattcagggacgtgtctaatagcgaggtacactttcagggaccaaaatgagggtttactc 26531151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 26530567 - 26530500
Alignment:
Q  65 tttcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactctt 132  Q
    ||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||    
T  26530567 tttcttgatccagggacatgtttgatagcgaggtacactttcagggacccaaatgaaggtttactctt 26530500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 36575530 - 36575600
Alignment:
Q  62 cgttttcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactctt 132  Q
    ||||||||||||| | |||||||  |||||||||||||||||||||||||| |||||||||||||||||||    
T  36575530 cgttttcttgatttaaggacgtgtctgatagcgaggtacactttcagggactcaaatgagggtttactctt 36575600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 36575021 - 36574954
Alignment:
Q  65 tttcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactctt 132  Q
    ||||||||| ||||||| || |||||||||||||||||||||||||||||||||||  ||||||||||    
T  36575021 tttcttgatccagggacatgtttgatagcgaggtacactttcagggacccaaatgaaagtttactctt 36574954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 35062625 - 35062564
Alignment:
Q  69 ttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 130  Q
    |||||||||||| |||||||||| ||||||  ||||| ||| |||||||||| |||||||||    
T  35062625 ttgattcagggatgtggttgataacgaggtgaacttttaggaacccaaatgaaggtttactc 35062564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 40908503 - 40908541
Alignment:
Q  131 ttcaaactattttcatcttcctaaagcgatacacttatg 169  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  40908503 ttcaaactcttttcatcttcctaaagcgaaacacttatg 40908541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 49919639 - 49919762
Alignment:
Q  8 ttaacgttttggatcggaatgactaacggaagacactttcggggagnnnnnnn-gcgttttcttgattcagggacgtggttgatagcgaggtacactttc 106  Q
    |||||||| ||||| ||||||||| | |||||| ||||| ||||||        ||||||  ||||| |||||| |||  ||||||||| | ||||||||    
T  49919639 ttaacgttctggatgggaatgactgatggaagagactttgggggagtttttggtgcgtttcattgatccagggaagtgactgatagcgatgcacactttc 49919738  T
Q  107 agggacccaaatgagggtttactc 130  Q
    | ||||||||||||| ||||||||    
T  49919739 aaggacccaaatgagagtttactc 49919762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 35063652 - 35063684
Alignment:
Q  99 acactttcagggacccaaatgagggtttactct 131  Q
    |||||||||| ||||||||||||||||||||||    
T  35063652 acactttcagagacccaaatgagggtttactct 35063684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 49917430 - 49917386
Alignment:
Q  89 atagcgaggtacactttcagggacccaaatgagggtttactcttc 133  Q
    |||||||| || |||||||| |||||||||||| |||||||||||    
T  49917430 atagcgagctatactttcagagacccaaatgagagtttactcttc 49917386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 16727880 - 16727813
Alignment:
Q  62 cgttttcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttact 129  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  16727880 cgttttcttgattcaggaacgtggctgatagcgaggtacactttcagcgacccaaatgagggtttact 16727813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 130
Target Start/End: Complemental strand, 38921486 - 38921455
Alignment:
Q  99 acactttcagggacccaaatgagggtttactc 130  Q
    ||||||||||||||||||||||||||||||||    
T  38921486 acactttcagggacccaaatgagggtttactc 38921455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 45291952 - 45292014
Alignment:
Q  68 cttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 130  Q
    ||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||    
T  45291952 cttgattcagggatgtgcctgatagcgaggtacactttcagggacccaaatgagggtttactc 45292014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 40601751 - 40601882
Alignment:
Q  1 cgctcacttaacgttttggatcggaatgactaacggaagacactttcggggagnnnnnnn---gcgttttcttgattcagggacgtggttgatagcgagg 97  Q
    |||||| |||||||||||||| |||||||||||||||||| ||||||| ||||          |||||| |||| |  ||||| |||  |||||||||||    
T  40601751 cgctcagttaacgttttggatgggaatgactaacggaagagactttcgaggagttttttttttgcgtttccttgttctagggatgtgcctgatagcgagg 40601850  T
Q  98 tacactttcagggacccaaatgagggtttact 129  Q
     |||||||||||||||||||||||||||||||    
T  40601851 cacactttcagggacccaaatgagggtttact 40601882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 37748591 - 37748661
Alignment:
Q  166 tatgaacaagaataaatggttaaaccttgttcttcttctttggtttctgaatcagtttcttggttttcatt 236  Q
    |||||||||||||||| | || |||||||||||||||||| |||||||||| |||||||||| ||||||||    
T  37748591 tatgaacaagaataaacgttttaaccttgttcttcttcttcggtttctgaaccagtttcttgattttcatt 37748661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 38516682 - 38516620
Alignment:
Q  68 cttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 130  Q
    |||||| |||||| |||  ||||||||| ||||||||||||||||||||||||||||||||||    
T  38516682 cttgatccagggatgtgtctgatagcgatgtacactttcagggacccaaatgagggtttactc 38516620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 130
Target Start/End: Original strand, 45296096 - 45296139
Alignment:
Q  87 tgatagcgaggtacactttcagggacccaaatgagggtttactc 130  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  45296096 tgatagcgaggtacacttttagggacccaaatgagggtttactc 45296139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 40600843 - 40600710
Alignment:
Q  1 cgctcacttaacgttttggatcggaatgactaacggaagacactttcggggag---nnnnnnngcgttttcttgattcagggacgtggttgatagcgagg 97  Q
    |||||| |||||||||||||  |||||||||||||||||| ||||||||||||          | |||| |||| | || ||| |||  |||||| ||||    
T  40600843 cgctcagttaacgttttggacgggaatgactaacggaagagactttcggggagttttttttttgtgtttccttgttccaaggatgtgcctgatagagagg 40600744  T
Q  98 tacactttcagggacccaaatgagggtttactct 131  Q
     ||| |||||||||||||||||||||||||||||    
T  40600743 cacattttcagggacccaaatgagggtttactct 40600710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 33061680 - 33061639
Alignment:
Q  8 ttaacgttttggatcggaatgactaacggaagacactttcgg 49  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  33061680 ttaacgttttggataggaatgactaacggaagagactttcgg 33061639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 38517751 - 38517812
Alignment:
Q  69 ttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 130  Q
    ||||| ||||||||||  ||||||||| ||| ||||| |||||| |||||||||||||||||    
T  38517751 ttgatccagggacgtgtctgatagcgatgtatacttttagggactcaaatgagggtttactc 38517812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 42537777 - 42537718
Alignment:
Q  69 ttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttac 128  Q
    |||||||||||| ||   ||||||||||  |||||||||||||||||| |||||||||||    
T  42537777 ttgattcagggatgtacctgatagcgagcaacactttcagggacccaactgagggtttac 42537718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 9448765 - 9448829
Alignment:
Q  68 cttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactctt 132  Q
    |||||| |||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  9448765 cttgatccagggatgtgtctgatagcgaggtacactttcagggacccaaatgagggtttactctt 9448829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 18193023 - 18193068
Alignment:
Q  87 tgatagcgaggtacactttcagggacccaaatgagggtttactctt 132  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  18193023 tgatagcgagggacactttcagggacccaaatgagggtttactctt 18193068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 130
Target Start/End: Original strand, 11020406 - 11020449
Alignment:
Q  87 tgatagcgaggtacactttcagggacccaaatgagggtttactc 130  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  11020406 tgatagcgagggacactttcagggacccaaatgagggtttactc 11020449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 226164 - 226119
Alignment:
Q  87 tgatagcgaggtacactttcagggacccaaatgagggtttactctt 132  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  226164 tgatagcgaggcacactttcaaggacccaaatgagggtttactctt 226119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 18191789 - 18191746
Alignment:
Q  87 tgatagcgaggtacactttcagggacccaaatgagggtttactc 130  Q
    |||||||| || ||||||||||||||||||||||||||||||||    
T  18191789 tgatagcgtgggacactttcagggacccaaatgagggtttactc 18191746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 227156 - 227206
Alignment:
Q  3 ctcacttaacgttttggatcggaatgactaacggaagacactttcggggag 53  Q
    |||| |||||||||||||| |||||||||||||||| | ||||||||||||    
T  227156 ctcagttaacgttttggatgggaatgactaacggaaaagactttcggggag 227206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 9447668 - 9447607
Alignment:
Q  69 ttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 130  Q
    ||||||||||||||||  ||||| ||||||| ||||||||| || ||||| |||||||||||    
T  9447668 ttgattcagggacgtgtctgataacgaggtatactttcaggaactcaaataagggtttactc 9447607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 30758894 - 30758934
Alignment:
Q  91 agcgaggtacactttcagggacccaaatgagggtttactct 131  Q
    ||||||| ||||||||| |||||||||||||||||||||||    
T  30758894 agcgagggacactttcaaggacccaaatgagggtttactct 30758934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 11020220 - 11020178
Alignment:
Q  87 tgatagcgaggtacactttcagggacccaaatgagggtttact 129  Q
    |||||| |||| ||||||||||||||||||||||| |||||||    
T  11020220 tgatagtgagggacactttcagggacccaaatgagagtttact 11020178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 6087 - 6141
Alignment:
Q  76 agggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 130  Q
    ||||||| || |||||||||||||||||||||||||| |||||||||||||||||    
T  6087 agggacggggctgatagcgaggtacactttcagggactcaaatgagggtttactc 6141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 13827 - 13881
Alignment:
Q  76 agggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 130  Q
    ||||||| || |||||||||||||||||||||||||| |||||||||||||||||    
T  13827 agggacggggctgatagcgaggtacactttcagggactcaaatgagggtttactc 13881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 4459 - 4336
Alignment:
Q  8 ttaacgttttggatcggaatgactaacggaagacactttcggggagnnnnnnn-gcgttttcttgattcagggacgtggttgatagcgaggtacactttc 106  Q
    |||||||||||||| ||||||||||| |||||| ||||| ||||||        ||||||  |||||  |||||||||| |||||||||  ||||||||     
T  4459 ttaacgttttggatgggaatgactaatggaagagactttgggggagtttttggtgcgtttcattgatctagggacgtggctgatagcgatatacactttt 4360  T
Q  107 agggacccaaatgagggtttactc 130  Q
    ||||| ||||| ||||||||||||    
T  4359 agggatccaaacgagggtttactc 4336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 12199 - 12076
Alignment:
Q  8 ttaacgttttggatcggaatgactaacggaagacactttcggggagnnnnnnn-gcgttttcttgattcagggacgtggttgatagcgaggtacactttc 106  Q
    |||||||||||||| ||||||||||| |||||| ||||| ||||||        ||||||  |||||  |||||||||| |||||||||  ||||||||     
T  12199 ttaacgttttggatgggaatgactaatggaagagactttgggggagtttttggtgcgtttcattgatctagggacgtggctgatagcgatatacactttt 12100  T
Q  107 agggacccaaatgagggtttactc 130  Q
    ||||| ||||| ||||||||||||    
T  12099 agggatccaaacgagggtttactc 12076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University