View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7851_low_4 (Length: 623)
Name: NF7851_low_4
Description: NF7851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7851_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 20 - 613
Target Start/End: Complemental strand, 52577775 - 52577183
Alignment:
| Q |
20 |
cgtctagcacatcaaatcaaagcatttttataaaaacaatgtttccaagacttaacagcaacatatatatagtgcagggaaccacatttgtgctgcagaa |
119 |
Q |
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| T |
52577775 |
cgtctagcacatcaaatcaaagcatttttataaaaacaatgtttccaagacttaacagcaacatatatatagtgcagggaaccacatttgtgctgcagaa |
52577676 |
T |
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| Q |
120 |
gcaaactgaacccagacaaaagttattaacagcaatttcatcgggggtgggtgttggagaggtaagggtgctcnnnnnnnctctataaacataactggaa |
219 |
Q |
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| T |
52577675 |
gcaaactgaacccagacaaaagttattaacagcaatttcatcgggggtgggtgttcgagaggtaagggtgctcttttttt-tcaataaacataactggaa |
52577577 |
T |
|
| Q |
220 |
tatttccaatgtcactatttttcacatccttaattccaacaggcaatagataaactcatttccttaaataagaattctggggaagaagatccagaactag |
319 |
Q |
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| T |
52577576 |
tatttccaatgtcactatttttcacatccttaattccaacaggcaatagataaactcatttccttaaataagaattctggggaagaagatccagaactag |
52577477 |
T |
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| Q |
320 |
aagagggcgaatggcagatgatatggaattcacaggtagattttgaaatacaaacgaagagttccaactgataattttgtttttctcatttgaaattaan |
419 |
Q |
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| T |
52577476 |
aagagggcgaatggcagatgatatggaattcacaggtagattttgaaatacaaacgaagagttccaactgataattttgtttttctcatttgaaattaat |
52577377 |
T |
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| Q |
420 |
nnnnnnagggagtactgtttgaagatgatttaaatgtaaacaattatcttacaaggttttatttttcgtatgtaaacaacttattctctacagactgtga |
519 |
Q |
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| T |
52577376 |
ttttttaaggagtactgtttgaagatgatttaaatgtaaacaattatcttactaggttttatttttggtatgtaaacaacttattctctacagactgtga |
52577277 |
T |
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| Q |
520 |
ctgatagttggttagagaatgctgccaatggtctgatgggaaagcaggtatcaagttcatcttgtgcatttaatttaattgccacaggttctgc |
613 |
Q |
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| T |
52577276 |
cggatagttggttagagaatgctgccaatggtctgatgggaaagcaggtatcaagttcatcttgtgcatgtaatttaattgccacaagttctgc |
52577183 |
T |
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