View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7851_low_5 (Length: 595)
Name: NF7851_low_5
Description: NF7851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7851_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 540; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 10 - 577
Target Start/End: Original strand, 37697351 - 37697918
Alignment:
| Q |
10 |
acctgtgagttggttgccgtctaaagagattatttcaagcttagggagagaggagagtgaagcagggaggggaccagtgagtttgttgttggtgaagtcg |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37697351 |
acctgtgagttggttgccgtctaaagagattatttcaagcttagggagcgaggagagtgaagcagggaggggaccagtgagtttgttgttggtgaagtcg |
37697450 |
T |
|
| Q |
110 |
atccgtaatagggttttcatctttgaaagagtgtttggtatctcgccggagatgctggtatggtatggctgagggtgaggtactcaagattggtgagttt |
209 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37697451 |
atccgtaatagggttttcatatttgaaagagtgtttggtatctcgccggagatgctggtatggtatggctgagggtgaggtaatcaagattggtgagttt |
37697550 |
T |
|
| Q |
210 |
ggagatggacggtgggatagtgccgacgaggttggggatgcgggagagagagaagtcgtcaaggaaagggaggttagtgatggagggtggaaatggaaca |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37697551 |
ggagatggacggtgggatagtgccgacgaggttggggatgcgggagagagagaaatcgtcaagaaaagggaggttagtgatggagggtggaaatggaaca |
37697650 |
T |
|
| Q |
310 |
ggtttagggaggttgaggtcgtcgagaccaaggttggcgactcggtctgagtcgcatgagacacccttccatttgtcgttgcagcaatcattgttgtttg |
409 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37697651 |
ggtttagggaggttgaggtcgtcgagaccaaggttggcgactcggtctgagtcgcatgagacacccttccatttgtcgttgcagcagtcattgttgtttg |
37697750 |
T |
|
| Q |
410 |
gatcccatgaagagagtttggttgggttgccaaattcttttttgatttggagtaaggcttctttgtcatgttgattgcatttttcggagagtgaaggtat |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37697751 |
gatcccatgaagagagtttggttgggttgccaaattcttttttgatttggagtaaggcttctttgtcatgttgattgcatttttcggagagtgaaggtat |
37697850 |
T |
|
| Q |
510 |
gatgaaacgttgtgtggttatgattaagagaagtagtatgcatgagaggaagtgttgcatggttgatg |
577 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37697851 |
gatgaagcgttgtgtggttatgattaagagaagtagtatgcatgagaggaagtgttgcatggttgatg |
37697918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 10 - 511
Target Start/End: Complemental strand, 38013735 - 38013229
Alignment:
| Q |
10 |
acctgtgagttggttgccgtctaaagagattatttcaagcttagggagagaggagagtgaagcagggaggggaccagtgagtttgttgttggtgaagtcg |
109 |
Q |
| |
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|||| |||||||||||||||| |||| |||| | ||| ||||||||||||||||||| || |||||||||||||| |||||||||||| ||||||| |
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| T |
38013735 |
acctttgagttggttgccgtccaaagtgatttctgtaaggttagggagagaggagagtgtagtggggaggggaccagttagtttgttgttgtagaagtcg |
38013636 |
T |
|
| Q |
110 |
atccgtaatagggttttcatctttgaaagagtgtttggtatctcgccggagatgctggtatggtatggctgagggtgaggtactcaagattggtgagttt |
209 |
Q |
| |
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|| ||||| || ||||| |||| ||| || |||||||||||||||||||||||| |||| |||| |||||||||||||||| ||| || ||||||| |
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| T |
38013635 |
atgcgtaagagcgttttgatctgtgagagggtgtttggtatctcgccggagatgttggt---gtat--ctgagggtgaggtacttaagttt--tgagttt |
38013543 |
T |
|
| Q |
210 |
ggagatggacggtg---ggatagtgccgacgaggttggggatgcgggagagagagaagtcgtcaaggaaagggaggttagtgatggagggtggaaatgga |
306 |
Q |
| |
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| |||||||||||| ||||||||||||| |||||||||||| |||||||||||| | ||||||||||||||||| |||||||||||||| |||| |
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| T |
38013542 |
gaagatggacggtgggaggatagtgccgacaaggttggggatgtgggagagagagagtaaggtaaggaaagggaggttagcgatggagggtggaattgga |
38013443 |
T |
|
| Q |
307 |
acaggtttagggaggttgaggtcgtcgagaccaaggttggcgactcg------------gtctgagtcgcatgagacacccttccatttgtcgttgcagc |
394 |
Q |
| |
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||||||||||| |||| |||| |||||| ||||||| | ||||| |||||||| |||||||||||| |||||||||| |||||||| |
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| T |
38013442 |
acaggtttaggtaggtcaaggttctcgagatcaaggttttctactcggttggtttgtgtgtctgagttgcatgagacacctttccatttgttgttgcagc |
38013343 |
T |
|
| Q |
395 |
aatcattgttgtttggatcccatgaagagagtttggttgggttgccaaattcttttttgatttggagtaaggcttctttgtcatgttgattgcatttttc |
494 |
Q |
| |
|
| || || |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| || | |||||||| | | ||||| ||||| |
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| T |
38013342 |
agtc--tg-tgtttggatcccatgaagagagttggctagggttgccaaattcttttttgatttggagtagggttcttttgtcatctgggttgcagttttc |
38013246 |
T |
|
| Q |
495 |
ggagagtgaaggtatga |
511 |
Q |
| |
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||| ||||||| |||| |
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| T |
38013245 |
tgagtgtgaaggaatga |
38013229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 411 - 511
Target Start/End: Complemental strand, 37993802 - 37993702
Alignment:
| Q |
411 |
atcccatgaagagagtttggttgggttgccaaattcttttttgatttggagtaaggcttctttgtcatgttgattgcatttttcggagagtgaaggtatg |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| | | || || |||||||||| ||||||||| ||| ||||||||||| ||| |
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| T |
37993802 |
atcccatgaagagagtttggttgggttgccaaattgttttttgatttgaaagagggtttttttgtcatgtggattgcattgttctgagagtgaaggaatg |
37993703 |
T |
|
| Q |
511 |
a |
511 |
Q |
| |
|
| |
|
|
| T |
37993702 |
a |
37993702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 62 - 168
Target Start/End: Complemental strand, 37994149 - 37994043
Alignment:
| Q |
62 |
gagagtgaagcagggaggggaccagtgagtttgttgttggtgaagtcgatccgtaatagggttttcatctttgaaagagtgtttggtatctcgccggaga |
161 |
Q |
| |
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|||||||| || ||||||||||||||||||||||||| | ||| |||||| || ||||||||| |||| ||| |||||||| |||||||||||||||| |
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| T |
37994149 |
gagagtgatgcggggaggggaccagtgagtttgttgtcgctgatgtcgatggttactagggttttgatctctgagagagtgttaggtatctcgccggaga |
37994050 |
T |
|
| Q |
162 |
tgctggt |
168 |
Q |
| |
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|| |||| |
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| T |
37994049 |
tgttggt |
37994043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 407 - 504
Target Start/End: Complemental strand, 37989616 - 37989519
Alignment:
| Q |
407 |
ttggatcccatgaagagagtttggttgggttgccaaattcttttttgatttggagtaaggcttctttgtcatgttgattgcatttttcggagagtgaa |
504 |
Q |
| |
|
||||||||||||||||||||| | | ||||||||||||||||| || |||||||||| || | |||||||| | | ||||| ||||| ||| ||||| |
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|
| T |
37989616 |
ttggatcccatgaagagagttggctagggttgccaaattctttctttatttggagtagggttcttttgtcatctgggttgcagttttctgagtgtgaa |
37989519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 118 - 473
Target Start/End: Complemental strand, 25326518 - 25326162
Alignment:
| Q |
118 |
tagggttttcatctttgaaagagtgtttggtatctcgccggagatgctggtatggtatggctgagggtgaggtactcaagattggtgagtttggagatgg |
217 |
Q |
| |
|
||||||||| |||| ||| || | |||||||||||||||||||||||| || | |||| | ||||| |||||| ||||||||||||||||||| |
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| T |
25326518 |
tagggttttaatctgtgagagtgagtttggtatctcgccggagatgcttgtgccg-----ctgatgatgaggacctcaagtttggtgagtttggagatgg |
25326424 |
T |
|
| Q |
218 |
acggtgggatagtgccgacgaggttggggatgcgggagagagagaagtcgtcaaggaaagggaggttagtg---atggagggtggaaatggaacaggttt |
314 |
Q |
| |
|
| || ||||||||||| ||||||||||||||| | || ||||| || | |||||||||||||||| ||||||||||||| | |||| |||| |
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|
| T |
25326423 |
aaggcgggatagtgccaacgaggttggggatgttgtcgatagagagaaagtttatgaaagggaggttagtgaatatggagggtggaatttgaacgtgttt |
25326324 |
T |
|
| Q |
315 |
agggaggttgaggtcgtcgagaccaaggttggcgactcgg------tctgagtcgcatgagacacccttccatttgtcgttgcagcaatcattgttgttt |
408 |
Q |
| |
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||||||||||||||| |||| |||| ||| ||| ||| | |||||||||| |||||| | |||||||| | ||||||| ||| |||| || |
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| T |
25326323 |
ggggaggttgaggtcgaagagatcaagcttgttgacacggtaggtttgtgagtcgcataggacaccttcccatttgtggctgcagcagtca--gttg-tt |
25326227 |
T |
|
| Q |
409 |
ggatcccatgaagagagtttggttgggttgccaaattcttttttgatttggagtaaggcttcttt |
473 |
Q |
| |
|
|| | ||||||||| |||||||||||| |||| | ||||||||| |||| |||| ||||||||| |
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|
| T |
25326226 |
gggttccatgaagaaagtttggttgggctgcctagttcttttttaattttcagtagggcttcttt |
25326162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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