View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7851_low_6 (Length: 591)

Name: NF7851_low_6
Description: NF7851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7851_low_6
NF7851_low_6
[»] chr6 (5 HSPs)
chr6 (17-437)||(663588-664013)
chr6 (17-263)||(908100-908346)
chr6 (474-576)||(664050-664152)
chr6 (474-578)||(907867-907971)
chr6 (217-261)||(10157995-10158039)
[»] chr7 (4 HSPs)
chr7 (305-368)||(44172881-44172944)
chr7 (298-372)||(36314611-36314685)
chr7 (322-388)||(38134414-38134480)
chr7 (214-262)||(36314628-36314676)
[»] chr2 (1 HSPs)
chr2 (211-262)||(44605137-44605188)
[»] chr5 (2 HSPs)
chr5 (311-384)||(16315862-16315935)
chr5 (311-359)||(19625928-19625976)
[»] chr3 (1 HSPs)
chr3 (305-373)||(8039206-8039274)
[»] chr4 (2 HSPs)
chr4 (311-373)||(18513238-18513300)
chr4 (332-381)||(5654609-5654658)
[»] chr8 (1 HSPs)
chr8 (322-387)||(6501481-6501546)
[»] chr1 (2 HSPs)
chr1 (305-382)||(43328458-43328535)
chr1 (211-259)||(40158408-40158456)


Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 17 - 437
Target Start/End: Original strand, 663588 - 664013
Alignment:
Q  17 accttaatccaattgacatcaaaaactgcattattatgcgaactccattcacaaatcctcgcttcctctgatatcaaaagaggcaaaatttcacataagc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663588 accttaatccaattgacatcaaaaactgcattattatgcgaactccattcacaaatcctcgcttcctctgatatcaaaagaggcaaaatttcacataagc 663687  T
Q  117 aaatcataaaccataaaaactgttcgtatataaaatctttgtagcaccaacacttcttatcaaaggtgtgccaagtgtacaatgcatgtaagtatctaac 216  Q
    ||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663688 aaatcataaaccataaaaattgttcatatatataatctttgtagcaccaacacttcttatcaaaggtgtgccaagtgtacaatgcatgtaagtatctaac 663787  T
Q  217 accgacacatgtaatttcattgaaatatgtctttttctcaaattataaatggtgttagaatcgacacttctaatcaaaggtgtgtctaacact-----aa 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||    
T  663788 accgacacatgtaatttcattgaaatatgtctttttctcaaattataaatggtgttagaatcgacacttctaatcaaaggtgtgtctaacactaacacaa 663887  T
Q  312 cacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaatgtccatattgtatcaggtgttcatact 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663888 cacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaatgtccatattgtatcaggtgttcatact 663987  T
Q  412 tcaaatctaattaatacagcgtagat 437  Q
    |||||||||||||||||| |||||||    
T  663988 tcaaatctaattaatacaacgtagat 664013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 908346 - 908100
Alignment:
Q  17 accttaatccaattgacatcaaaaactgcattattatgcgaactccattcacaaatcctcgcttcctctgatatcaaaagaggcaaaatttcacataagc 116  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||     
T  908346 accttaatccaattgacgtcaaaaactgcattattatgcaaactccattcacaaattctcgctttctctggtatcaaaagaggcaaaatttcacataagt 908247  T
Q  117 aaatcataaaccataaaaactgttcgtatataaaatctttgtagcaccaacacttcttatcaaaggtgtgccaagtgtacaatgcatgtaagtatctaac 216  Q
    ||||||||||||||||||  ||||  |||||| ||||||||||||||||||||| ||||||||||||||||||||||| | || ||||||||| ||||||    
T  908246 aaatcataaaccataaaatttgttgatatatataatctttgtagcaccaacactacttatcaaaggtgtgccaagtgtccgatacatgtaagtgtctaac 908147  T
Q  217 accgacacatgtaatttcattgaaatatgtctttttctcaaattata 263  Q
    ||||||| |||||| | |||||||||||| || ||||||||||||||    
T  908146 accgacaaatgtaagtacattgaaatatgactatttctcaaattata 908100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 474 - 576
Target Start/End: Original strand, 664050 - 664152
Alignment:
Q  474 cctgcatttctttctagacactgaggcaccgcaaattttcgacgagtatcaaaaaagctaacatatccctcctcattagacaaagcaagaatatgacaaa 573  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  664050 cctgcatttctttctagacactgaggcaccgcaaattttcgacgagtatcaaaaaagctaacatatccctcctcattagacaaagcaagaatatgacaaa 664149  T
Q  574 att 576  Q
    |||    
T  664150 att 664152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 474 - 578
Target Start/End: Complemental strand, 907971 - 907867
Alignment:
Q  474 cctgcatttctttctagacactgaggcaccgcaaattttcgacgagtatcaaaaaagctaacatatccctcctcattagacaaagcaagaatatgacaaa 573  Q
    |||||||||||||||||||||  ||||||  | ||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  907971 cctgcatttctttctagacacaaaggcacttcgaattttcaacgactatcgaaaaagctaacatatccctcctcattagacaaagcaagaatatgacaaa 907872  T
Q  574 attga 578  Q
    |||||    
T  907871 attga 907867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 10158039 - 10157995
Alignment:
Q  217 accgacacatgtaatttcattgaaatatgtctttttctcaaatta 261  Q
    |||||||||||| ||| ||||||| |||||| |||||||||||||    
T  10158039 accgacacatgtgattacattgaattatgtcattttctcaaatta 10157995  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 44172881 - 44172944
Alignment:
Q  305 acactaacacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatca 368  Q
    |||| |||||||||| |||||||||| |||||||||| |||| ||| |||||||||||| ||||    
T  44172881 acaccaacacaacacaaacacatgtgattacattgaattatgtcattttctcaaattattatca 44172944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 372
Target Start/End: Original strand, 36314611 - 36314685
Alignment:
Q  298 gtgtctaacactaacacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgt 372  Q
    ||||| ||||| || ||||||| ||||||| || ||||||||||||||| ||| |||||||||||| || |||||    
T  36314611 gtgtccaacaccaagacaacaccaacacatatgattacattgaaatatgtcattttctcaaattattatgagtgt 36314685  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 388
Target Start/End: Original strand, 38134414 - 38134480
Alignment:
Q  322 acacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaatgtcc 388  Q
    |||||| || |||||||||| |||| ||| |||||||||||| ||| ||||||||||||| ||||||    
T  38134414 acacatatgattacattgaattatgtcattttctcaaattattatcggtgtcaacatgtccatgtcc 38134480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 36314628 - 36314676
Alignment:
Q  214 aacaccgacacatgtaatttcattgaaatatgtctttttctcaaattat 262  Q
    |||||| |||||| | ||| |||||||||||||| ||||||||||||||    
T  36314628 aacaccaacacatatgattacattgaaatatgtcattttctcaaattat 36314676  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 44605137 - 44605188
Alignment:
Q  211 tctaacaccgacacatgtaatttcattgaaatatgtctttttctcaaattat 262  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||||||||    
T  44605137 tctaacaccgacacatgtaattacattgaattatgttattttctcaaattat 44605188  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 311 - 384
Target Start/End: Complemental strand, 16315935 - 16315862
Alignment:
Q  311 acacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaat 384  Q
    |||||||||  | ||||||||||||||| || |||  ||| | |||||||||| ||||||||||||||||||||    
T  16315935 acacaacacagatacatgtggttacattcaattatatcatttcctcaaattattatcagtgtcaacatgtcaat 16315862  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 311 - 359
Target Start/End: Original strand, 19625928 - 19625976
Alignment:
Q  311 acacaacactaacacatgtggttacattgaaatatgccatgttctcaaa 359  Q
    |||||||||| ||||||||||||||||| || ||| |||| ||||||||    
T  19625928 acacaacactgacacatgtggttacattcaattattccattttctcaaa 19625976  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 373
Target Start/End: Complemental strand, 8039274 - 8039206
Alignment:
Q  305 acactaacacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtc 373  Q
    ||||| |||||||||  |||| | || ||||||||||  ||||||| ||||||||||||||||||||||    
T  8039274 acactgacacaacaccgacacctatgattacattgaatcatgccattttctcaaattatcatcagtgtc 8039206  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 373
Target Start/End: Original strand, 18513238 - 18513300
Alignment:
Q  311 acacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtc 373  Q
    |||||||||| |||||| || |||||||||| |||| ||| |||||||||||| ||| |||||    
T  18513238 acacaacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 5654609 - 5654658
Alignment:
Q  332 ttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtc 381  Q
    |||||||||| |||| ||| |||||||||||| ||||||||| |||||||    
T  5654609 ttacattgaattatgtcattttctcaaattattatcagtgtcgacatgtc 5654658  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 387
Target Start/End: Complemental strand, 6501546 - 6501481
Alignment:
Q  322 acacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaatgtc 387  Q
    ||||||||||||||||| || |||  |||  ||||||||||| | |||||||||| ||||||||||    
T  6501546 acacatgtggttacatttaattatttcattctctcaaattattaccagtgtcaacgtgtcaatgtc 6501481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 382
Target Start/End: Complemental strand, 43328535 - 43328458
Alignment:
Q  305 acactaacacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtca 382  Q
    |||| ||||| ||| | ||||||||||||||||| || |||  ||| |||||||||||| || ||||||||| |||||    
T  43328535 acaccaacacgacaatgacacatgtggttacattaaattatttcattttctcaaattattataagtgtcaacgtgtca 43328458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 40158408 - 40158456
Alignment:
Q  211 tctaacaccgacacatgtaatttcattgaaatatgtctttttctcaaat 259  Q
    |||||||||||||||||| |||||||| |  |||||| |||||||||||    
T  40158408 tctaacaccgacacatgtgatttcattcatttatgtcattttctcaaat 40158456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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