View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7851_low_8 (Length: 449)

Name: NF7851_low_8
Description: NF7851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7851_low_8
NF7851_low_8
[»] chr2 (20 HSPs)
chr2 (5-436)||(11099409-11099857)
chr2 (105-309)||(14927076-14927280)
chr2 (122-229)||(15124707-15124813)
chr2 (105-198)||(36316192-36316284)
chr2 (122-229)||(5711598-5711705)
chr2 (57-161)||(10523139-10523243)
chr2 (104-161)||(42895598-42895655)
chr2 (105-229)||(5509133-5509256)
chr2 (122-229)||(93278-93384)
chr2 (117-200)||(2375082-2375164)
chr2 (122-200)||(16419350-16419427)
chr2 (122-215)||(36352083-36352175)
chr2 (105-229)||(2324294-2324417)
chr2 (247-309)||(37812546-37812608)
chr2 (123-200)||(13210609-13210686)
chr2 (99-176)||(13764452-13764529)
chr2 (27-83)||(38629805-38629862)
chr2 (99-135)||(15988324-15988360)
chr2 (265-309)||(25082603-25082647)
chr2 (122-239)||(33381112-33381231)
[»] chr5 (19 HSPs)
chr5 (122-229)||(24346660-24346767)
chr5 (122-229)||(24270029-24270135)
chr5 (122-285)||(41666916-41667079)
chr5 (122-309)||(15480296-15480482)
chr5 (122-289)||(24531593-24531759)
chr5 (122-229)||(32908876-32908982)
chr5 (122-280)||(24528543-24528700)
chr5 (265-303)||(28510071-28510109)
chr5 (105-198)||(8098402-8098494)
chr5 (105-182)||(21209828-21209905)
chr5 (105-198)||(27133134-27133226)
chr5 (242-309)||(6413469-6413536)
chr5 (262-297)||(35167458-35167493)
chr5 (145-303)||(9368575-9368732)
chr5 (122-200)||(17150392-17150469)
chr5 (252-309)||(6919247-6919304)
chr5 (115-160)||(25780530-25780575)
chr5 (265-297)||(17352501-17352533)
chr5 (265-309)||(18333766-18333810)
[»] chr6 (13 HSPs)
chr6 (122-304)||(6542867-6543048)
chr6 (122-285)||(4868736-4868899)
chr6 (122-309)||(9704994-9705181)
chr6 (99-170)||(15082043-15082114)
chr6 (247-309)||(12319722-12319784)
chr6 (115-200)||(12648482-12648567)
chr6 (268-309)||(12885028-12885069)
chr6 (145-229)||(8001496-8001580)
chr6 (122-178)||(27773782-27773838)
chr6 (172-228)||(31729371-31729427)
chr6 (252-309)||(7638643-7638700)
chr6 (263-303)||(3713322-3713362)
chr6 (265-309)||(3823278-3823322)
[»] chr3 (19 HSPs)
chr3 (99-200)||(39620175-39620276)
chr3 (122-309)||(16239565-16239752)
chr3 (189-309)||(30179698-30179818)
chr3 (15-200)||(33640128-33640314)
chr3 (122-228)||(37246777-37246882)
chr3 (122-229)||(4155378-4155484)
chr3 (105-194)||(4188445-4188533)
chr3 (57-309)||(12929987-12930238)
chr3 (122-275)||(45828027-45828179)
chr3 (105-229)||(1722983-1723106)
chr3 (122-278)||(13574844-13575000)
chr3 (120-200)||(22775556-22775636)
chr3 (265-309)||(29575956-29576000)
chr3 (120-200)||(31150926-31151006)
chr3 (122-200)||(34992689-34992766)
chr3 (119-160)||(1662472-1662513)
chr3 (247-304)||(45138850-45138907)
chr3 (265-309)||(39620300-39620344)
chr3 (178-310)||(45138950-45139082)
[»] chr8 (19 HSPs)
chr8 (122-290)||(41790652-41790818)
chr8 (129-309)||(24532352-24532531)
chr8 (105-280)||(12317049-12317223)
chr8 (122-229)||(5932108-5932214)
chr8 (122-229)||(11232353-11232459)
chr8 (122-297)||(20301247-20301421)
chr8 (122-297)||(21087879-21088053)
chr8 (114-218)||(8466639-8466743)
chr8 (265-304)||(4873756-4873795)
chr8 (115-198)||(16050114-16050196)
chr8 (122-172)||(3157168-3157218)
chr8 (267-309)||(3961467-3961509)
chr8 (122-200)||(18004253-18004330)
chr8 (97-170)||(4873590-4873663)
chr8 (105-198)||(17476916-17477008)
chr8 (252-309)||(22638232-22638289)
chr8 (105-198)||(39743380-39743472)
chr8 (265-305)||(6462937-6462977)
chr8 (72-155)||(27439431-27439514)
[»] chr4 (28 HSPs)
chr4 (104-200)||(4464378-4464474)
chr4 (122-309)||(35788633-35788820)
chr4 (122-285)||(35819052-35819214)
chr4 (122-227)||(36686065-36686169)
chr4 (113-229)||(12869178-12869293)
chr4 (105-229)||(40716527-40716651)
chr4 (114-161)||(25716014-25716061)
chr4 (139-200)||(9908772-9908832)
chr4 (265-309)||(6218413-6218457)
chr4 (105-280)||(9685401-9685575)
chr4 (57-127)||(13637615-13637686)
chr4 (121-171)||(24513282-24513332)
chr4 (126-200)||(30530090-30530163)
chr4 (122-224)||(33107929-33108031)
chr4 (122-200)||(35796901-35796978)
chr4 (203-244)||(4455791-4455832)
chr4 (60-89)||(8902819-8902848)
chr4 (60-89)||(8903067-8903096)
chr4 (204-301)||(11036516-11036613)
chr4 (265-309)||(20253484-20253529)
chr4 (105-198)||(21498646-21498738)
chr4 (122-167)||(50543489-50543534)
chr4 (105-198)||(54054945-54055037)
chr4 (265-309)||(400631-400675)
chr4 (265-309)||(18528283-18528327)
chr4 (120-192)||(25324191-25324263)
chr4 (122-198)||(28245685-28245760)
chr4 (265-309)||(44118925-44118969)
[»] chr7 (12 HSPs)
chr7 (96-198)||(26561971-26562072)
chr7 (140-280)||(26239857-26239997)
chr7 (105-198)||(31257174-31257266)
chr7 (265-309)||(28080639-28080683)
chr7 (122-289)||(25620130-25620296)
chr7 (122-215)||(18826412-18826504)
chr7 (122-309)||(36277150-36277336)
chr7 (113-285)||(2544364-2544533)
chr7 (204-309)||(6634829-6634934)
chr7 (184-229)||(48243422-48243467)
chr7 (55-87)||(24612757-24612789)
chr7 (115-227)||(36993225-36993336)
[»] scaffold0092 (1 HSPs)
scaffold0092 (122-229)||(5709-5815)
[»] chr1 (19 HSPs)
chr1 (28-164)||(37496202-37496340)
chr1 (122-229)||(35772083-35772189)
chr1 (122-200)||(4112699-4112776)
chr1 (105-198)||(3169851-3169943)
chr1 (122-215)||(9146787-9146880)
chr1 (120-200)||(5109333-5109412)
chr1 (265-309)||(17412541-17412585)
chr1 (120-200)||(38733234-38733309)
chr1 (104-230)||(5953642-5953768)
chr1 (265-307)||(34264552-34264594)
chr1 (122-196)||(35892143-35892216)
chr1 (120-165)||(17208671-17208716)
chr1 (115-172)||(26177018-26177075)
chr1 (105-182)||(51589092-51589169)
chr1 (204-309)||(52650776-52650881)
chr1 (247-311)||(17452727-17452791)
chr1 (265-309)||(21626405-21626449)
chr1 (247-303)||(40079132-40079188)
chr1 (265-309)||(42586504-42586548)
[»] scaffold0519 (1 HSPs)
scaffold0519 (122-229)||(1970-2076)
[»] scaffold0003 (1 HSPs)
scaffold0003 (120-175)||(87731-87786)


Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 5 - 436
Target Start/End: Original strand, 11099409 - 11099857
Alignment:
Q  5 ggcttctgaagtgaagattgctccaacttataaaaacattgttaaatcatttttatccgatatgagactctttaacacacccccttcatgcgaggactag 104  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11099409 ggcttctgaagtgaagattgctccgacttataaaaacattgttaaaccatttttatccgatatgagactctttaacacacccccttcatgcgaggactag 11099508  T
Q  105 acatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataa 204  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11099509 acatctggagcgtgaatataaatggtgggtggctcgatagcggaaatctgatagcagatggtccaatgaatcatggaggagactctgataccatctataa 11099608  T
Q  205 aattatggttgggtataacacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattgccaggtcatctcttatctgatgtg 304  Q
    ||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11099609 aattatggttgagtataacacaaccttgcaaaaccaacttatgaggcgaggactgcaccaacttataaacacattgtcaggtcatctcttatctgatgtg 11099708  T
Q  305 aga-----------------ctagttgttgttggtgggttcaagtacaaacttggatttccttctgttacaacatgacactgtaagagataaggattgtc 387  Q
    |||                 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||     
T  11099709 agactctttaacgataatttctaattgttgttggtgggttcaagtacaaacttggatttccttctgttacaacacggcactgtaagagataaggattgtt 11099808  T
Q  388 tgatctaaattaacggtcgagatcgttcaactatgctaaaaatgatgtc 436  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11099809 tgatctgaattaacggtcgagatcgttcaactatgctaaaaatgatgtc 11099857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 105 - 309
Target Start/End: Complemental strand, 14927280 - 14927076
Alignment:
Q  105 acatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataa 204  Q
    |||||||||||||| | | ||||| ||||||||| |||||| |||| |||||||||| ||  |||| | |||||||||||| |||||||   ||||   |    
T  14927280 acatctggagcgtggacacaaatgatgggtgactggataacagaaacctgatagcaggtgtcccaacggatcatgaaggaggctctgatgttatcttaga 14927181  T
Q  205 aattatggttgggtataacacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattgccaggtcatctcttatctgatgtg 304  Q
    |||  |||||| |  ||||||||||   |||| || ||||| |||| ||||| ||| || |||||||||||||||| |||||||||||||||| ||||||    
T  14927180 aatcgtggttgagcctaacacaaccacacaaagctgacttatgaggtgaggattgcccccacttataaacacattgtcaggtcatctcttatccgatgtg 14927081  T
Q  305 agact 309  Q
     ||||    
T  14927080 tgact 14927076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 15124707 - 15124813
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    ||||||||||| |||| |||||||| ||| |||||||||| |||||||||| ||| || | ||||||||||||||||||   ||||  ||||||||| ||    
T  15124707 ataaatggtggatgacccgataacgaaaacctgatagcaggtggtccaatggatcttgga-gagactctgataccatcttagaaatcgtggttgggtcta 15124805  T
Q  222 acacaacc 229  Q
    ||||||||    
T  15124806 acacaacc 15124813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 36316192 - 36316284
Alignment:
Q  105 acatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccat 198  Q
    ||||||| |||||||| |||||||||||||| | |||||||||||| |||||| ||| ||| |||| ||||| |||| ||| ||||||||||||    
T  36316192 acatctgaagcgtgaacataaatggtgggtggcccgataacggaaacctgataacaggtggcccaaagaatcgtgaa-gaggctctgataccat 36316284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 5711598 - 5711705
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    |||||||||||||| | |||||||||||| |||||||||| |||||||| | ||| || ||||| ||||||||| ||||   ||||  ||||||||  ||    
T  5711598 ataaatggtgggtggcccgataacggaaacctgatagcaggtggtccaacggatcttggaggaggctctgatactatcttagaaatggtggttgggccta 5711697  T
Q  222 acacaacc 229  Q
    ||||||||    
T  5711698 acacaacc 5711705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 10523243 - 10523139
Alignment:
Q  57 ttatccgatatgagactctttaacacacccccttcatgcg-aggactagacatctggagcgtgaatataaatggtgggtgactcgataacggaaatctga 155  Q
    ||||||||| || ||||||||||||||| |||| || ||  |||| | |||||||| |||||| | |||||||||||||| ||||||||||||||  |||    
T  10523243 ttatccgatgtgggactctttaacacactccct-cacgctcaggattggacatctgaagcgtggacataaatggtgggtggctcgataacggaaacttga 10523145  T
Q  156 tagcag 161  Q
    ||||||    
T  10523144 tagcag 10523139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 42895655 - 42895598
Alignment:
Q  104 gacatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcag 161  Q
    ||||||||||||||| ||||||||||||||||| || ||| |||||| ||||||||||    
T  42895655 gacatctggagcgtggatataaatggtgggtgagtctatagcggaaacctgatagcag 42895598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 229
Target Start/End: Complemental strand, 5509256 - 5509133
Alignment:
Q  105 acatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataa 204  Q
    ||||||| |||||||| |||||||  ||||| | |||||||||||| |||||| ||| ||| |||| ||||| |||| ||| |||||||||||| |   |    
T  5509256 acatctgaagcgtgaacataaatgacgggtggcccgataacggaaacctgataacaggtggcccaaagaatcgtgaa-gaggctctgataccatattaga 5509158  T
Q  205 aattatggttgggtataacacaacc 229  Q
    ||| |||||||||  ||||||||||    
T  5509157 aatcatggttgggcctaacacaacc 5509133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 93278 - 93384
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    |||| ||||||||| | |||||||||||| |||||||||| ||| |||||| ||| || | ||| ||||||||||||||  |||||  ||||||||  ||    
T  93278 ataattggtgggtggcccgataacggaaagctgatagcaggtggcccaatggatcttgga-gaggctctgataccatcttaaaaatcgtggttgggccta 93376  T
Q  222 acacaacc 229  Q
    ||||||||    
T  93377 acacaacc 93384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 2375082 - 2375164
Alignment:
Q  117 tgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatct 200  Q
    |||||||||||||||||||   |||||||| |||||||||||||| ||  |||||||||| ||||  ||||||||||| |||||    
T  2375082 tgaatataaatggtgggtggtccgataacgaaaatctgatagcaggtgacccaatgaatcctgaa-aagactctgatatcatct 2375164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 16419427 - 16419350
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatct 200  Q
    |||||||||||||| ||||||| |||||| |||||||||| ||| |||||| ||| || | ||| ||||||||||||||    
T  16419427 ataaatggtgggtggctcgatagcggaaacctgatagcaggtggcccaatggatcttgga-gaggctctgataccatct 16419350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 36352083 - 36352175
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttg 215  Q
    |||||||||||||| | |||||||||||| |||||| ||| ||| || ||| ||| |||| |||||||| |||||||||  |||||| ||||||    
T  36352083 ataaatggtgggtggcccgataacggaaacctgataacaggtggcccgatggatcttgaa-gagactctaataccatcttaaaaattgtggttg 36352175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 229
Target Start/End: Complemental strand, 2324417 - 2324294
Alignment:
Q  105 acatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataa 204  Q
    ||||||| |||||||| |||||||  ||||| | |||||||||||| |||||| ||| ||| ||||  |||| |||| ||| |||||||||||| |  ||    
T  2324417 acatctgaagcgtgaacataaatgacgggtggcccgataacggaaacctgataacaggtggcccaaacaatcgtgaa-gaggctctgataccatattaaa 2324319  T
Q  205 aattatggttgggtataacacaacc 229  Q
    |||  ||||||||  ||||||||||    
T  2324318 aatcgtggttgggcctaacacaacc 2324294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 309
Target Start/End: Original strand, 37812546 - 37812608
Alignment:
Q  247 gaggcgaggactgcaccaacttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    |||| ||||| ||| || |||||||||||||||| |||||||| ||||||| |||||| ||||    
T  37812546 gaggtgaggattgcccccacttataaacacattgtcaggtcatgtcttatccgatgtgggact 37812608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 13210686 - 13210609
Alignment:
Q  123 taaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatct 200  Q
    ||||||||||||  | |||||  |||||||||||||||  ||| |||||| ||| || ||||| ||||||||||||||    
T  13210686 taaatggtgggttgcccgatagaggaaatctgatagcatgtggcccaatggatcttggaggagtctctgataccatct 13210609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 13764452 - 13764529
Alignment:
Q  99 gactagacatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatc 176  Q
    |||| ||||||| ||  ||| ||||||||||   ||||||||||||| |||| ||| |||||| ||||||||||||||    
T  13764452 gactggacatctagaatgtggatataaatggcaagtgactcgataacagaaacctggtagcaggtggtccaatgaatc 13764529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 38629862 - 38629805
Alignment:
Q  27 ccaacttataaaaacattgttaaatcattt-ttatccgatatgagactctttaacaca 83  Q
    |||||||||||| ||||||| |  |||||| ||||||||| |||||||||||||||||    
T  38629862 ccaacttataaatacattgtcatgtcatttcttatccgatgtgagactctttaacaca 38629805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 15988360 - 15988324
Alignment:
Q  99 gactagacatctggagcgtgaatataaatggtgggtg 135  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  15988360 gactagacgtctggagcgtggatataaatggtgggtg 15988324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 25082603 - 25082647
Alignment:
Q  265 acttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    |||||||||||||||| |||  ||||||||||||||| |||||||    
T  25082603 acttataaacacattgtcagaccatctcttatctgatatgagact 25082647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 33381112 - 33381231
Alignment:
Q  122 ataaatggtgggtgactcga--taacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggta 219  Q
    ||||||| ||||||||||||  || | |||| ||| |||||  ||| | |||||||| ||||||||||||| |||||||||   ||||  ||||||||      
T  33381112 ataaatgatgggtgactcgagatagcagaaacctgttagcatgtggcctaatgaatcttgaaggagactctaataccatcttagaaatcgtggttgggac 33381211  T
Q  220 taacacaaccttgcaaaact 239  Q
    |||||||||||  |||||||    
T  33381212 taacacaacctcacaaaact 33381231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 24346660 - 24346767
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    |||||||||||||| | |||||||||||| |||||||||| ||| |||||| ||| || ||||| ||||||||||||||  |||||  ||||||||| ||    
T  24346660 ataaatggtgggtggcccgataacggaaacctgatagcaggtggcccaatggatcttggaggaggctctgataccatcttaaaaatcgtggttgggtcta 24346759  T
Q  222 acacaacc 229  Q
    ||||||||    
T  24346760 acacaacc 24346767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 24270029 - 24270135
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    |||||||||||||| | |||||||||||| |||||||||| ||| |||||| ||| || ||||| ||||||||||||||  |||||  ||||| ||| ||    
T  24270029 ataaatggtgggtggcccgataacggaaacctgatagcaggtggcccaatggatcttggaggaggctctgataccatcttaaaaatcgtggtt-ggtcta 24270127  T
Q  222 acacaacc 229  Q
    ||||||||    
T  24270128 acacaacc 24270135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 122 - 285
Target Start/End: Original strand, 41666916 - 41667079
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    |||||||||||||| | |||||||||||| |||||||||| ||| |||| | ||| || ||||| ||||||||||||||   ||||  ||||||||  ||    
T  41666916 ataaatggtgggtggcccgataacggaaacctgatagcaggtggcccaacggatcttggaggaggctctgataccatcttagaaatcgtggttgggccta 41667015  T
Q  222 acacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattgccagg 285  Q
    ||||||||   ||||||   |||  |||| ||||| ||| || |||||||||||||||| ||||    
T  41667016 acacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacacattgtcagg 41667079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 309
Target Start/End: Complemental strand, 15480482 - 15480296
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    |||||||||||||| | | ||| |||||| |||||||||| ||| |||||| ||| |||| ||| ||||||||||||||   ||||  ||||||||  ||    
T  15480482 ataaatggtgggtggcccaatagcggaaacctgatagcaggtggcccaatggatcttgaa-gaggctctgataccatcttagaaatcgtggttgggccta 15480384  T
Q  222 acacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    ||| ||||   |||||| | |||  |||| ||||| ||| || |||||||||||||||| |||  |||| | |||| |||||| ||||    
T  15480383 acagaaccccacaaaaccagcttgtgaggtgaggattgcccccacttataaacacattgtcagaccatcacctatccgatgtgggact 15480296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 289
Target Start/End: Complemental strand, 24531759 - 24531593
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    ||||||| ||||||  |||||||| |||| |||||||||| ||| |||||| |||||  || || ||||||||||||||   ||||  |||||||| |||    
T  24531759 ataaatgttgggtggttcgataacagaaaactgatagcaggtggcccaatggatcatagag-aggctctgataccatcttagaaatcgtggttgggcata 24531661  T
Q  222 acacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattgccaggtcat 289  Q
    ||||||||   |||||    |||  |||| ||||| ||| || |||||||||||||||| ||||||||    
T  24531660 acacaaccccacaaaatcggcttgtgaggtgaggattgcccccacttataaacacattgtcaggtcat 24531593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 32908876 - 32908982
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    |||||||||||||||| ||||| | |||| |||||||||||||| |||||| ||| |||| ||| |||| ||| |||||   ||||| |||||| || ||    
T  32908876 ataaatggtgggtgacccgatagcagaaacctgatagcagatggcccaatggatcttgaa-gaggctctaatatcatcttagaaattgtggttgagtcta 32908974  T
Q  222 acacaacc 229  Q
    ||||||||    
T  32908975 acacaacc 32908982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 280
Target Start/End: Complemental strand, 24528700 - 24528543
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    ||||||| ||||||  |||||||  |||| || ||||||| |||||||||| |||||| || || ||||||||||||||   |||| |||||||||  ||    
T  24528700 ataaatgttgggtggttcgataatagaaaactaatagcaggtggtccaatggatcatggag-aggctctgataccatcttagaaatcatggttgggccta 24528602  T
Q  222 acacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattg 280  Q
    ||||||||   ||||||   |||  |||| ||||| ||| || ||||||||||||||||    
T  24528601 acacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacacattg 24528543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 28510109 - 28510071
Alignment:
Q  265 acttataaacacattgccaggtcatctcttatctgatgt 303  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  28510109 acttataaacacattgtcaggtcatctcttatctgatgt 28510071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 8098494 - 8098402
Alignment:
Q  105 acatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccat 198  Q
    ||||||| |||||||| |||||||  ||||| | |||||||||||| |||||| ||| ||| |||| ||||| |||| ||| ||||||||||||    
T  8098494 acatctgaagcgtgaacataaatgacgggtggcccgataacggaaacctgataacaggtggcccaaagaatcgtgaa-gaggctctgataccat 8098402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 21209828 - 21209905
Alignment:
Q  105 acatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaag 182  Q
    ||||||| |||||||| |||||||  ||||||| |||||||||||| |||||| ||| ||| |||| ||||| |||||    
T  21209828 acatctgaagcgtgaacataaatgacgggtgacccgataacggaaacctgataacaggtggcccaaagaatcgtgaag 21209905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 27133134 - 27133226
Alignment:
Q  105 acatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccat 198  Q
    ||||||| || ||||| |||||||  ||||||| |||||||||||| |||||| ||| ||| |||| ||||| |||| ||| ||||||||||||    
T  27133134 acatctgaagtgtgaacataaatgacgggtgacccgataacggaaacctgataacaggtggcccaaagaatcgtgaa-gaggctctgataccat 27133226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 6413469 - 6413536
Alignment:
Q  242 cttaagaggcgaggactgcaccaacttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    |||| |||| ||||| ||| || |||||||||||||||| ||||||||||| ||||  ||||||||||    
T  6413469 cttatgaggtgaggattgcccccacttataaacacattgtcaggtcatctcatatccaatgtgagact 6413536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 297
Target Start/End: Original strand, 35167458 - 35167493
Alignment:
Q  262 ccaacttataaacacattgccaggtcatctcttatc 297  Q
    ||||||||||||||||||| ||||||||||||||||    
T  35167458 ccaacttataaacacattgtcaggtcatctcttatc 35167493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 303
Target Start/End: Complemental strand, 9368732 - 9368575
Alignment:
Q  145 cggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtataacacaaccttgcaaaactaactt 244  Q
    |||||| |||||||||| ||| |||||| ||| ||||| || ||||||||||| ||   ||||||||||||||  ||||||||||   ||||||   |||    
T  9368732 cggaaacctgatagcaggtggcccaatggatcttgaag-aggctctgataccaccttagaaattatggttgggcctaacacaaccccacaaaaccggctt 9368634  T
Q  245 aagaggcgaggactgcaccaacttataaacacattgccaggtcatctcttatctgatgt 303  Q
      |||| ||||| |||  | |||||||||||||||| || | |||||| |||| |||||    
T  9368633 gtgaggtgaggattgcctccacttataaacacattgtcacgccatctcctatccgatgt 9368575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 17150392 - 17150469
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatct 200  Q
    |||||||||||||| | ||||| |||||| ||||||| || ||| |||||| ||| |||| ||| ||||||||||||||    
T  17150392 ataaatggtgggtggcccgatagcggaaacctgatagtaggtggcccaatggatcttgaa-gaggctctgataccatct 17150469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 6919247 - 6919304
Alignment:
Q  252 gaggactgcaccaacttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    ||||| ||| || ||| |||||||||||| ||||||||||||||| ||||||| ||||    
T  6919247 gaggattgcccccactaataaacacattgtcaggtcatctcttatttgatgtgggact 6919304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 25780575 - 25780530
Alignment:
Q  115 cgtgaatataaatggtgggtgactcgataacggaaatctgatagca 160  Q
    |||||| |||||||||||||||  ||| ||||||||||||||||||    
T  25780575 cgtgaacataaatggtgggtgatacgacaacggaaatctgatagca 25780530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 297
Target Start/End: Original strand, 17352501 - 17352533
Alignment:
Q  265 acttataaacacattgccaggtcatctcttatc 297  Q
    |||||||||||||||| ||||||||||||||||    
T  17352501 acttataaacacattgtcaggtcatctcttatc 17352533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 18333766 - 18333810
Alignment:
Q  265 acttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    ||||||||||||||||| ||| |||||| ||||||||||| ||||    
T  18333766 acttataaacacattgcaaggccatctcctatctgatgtgggact 18333810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 122 - 304
Target Start/End: Original strand, 6542867 - 6543048
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    |||||||||||||||| |||||||||||| |||||||||  ||  |||||| ||| |||| ||| |||||||||||||| | ||||  ||||||||| ||    
T  6542867 ataaatggtgggtgacccgataacggaaacctgatagcaagtgacccaatggatcttgaa-gaggctctgataccatctttgaaatcgtggttgggtcta 6542965  T
Q  222 acacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattgccaggtcatctcttatctgatgtg 304  Q
    ||||||||   ||||||   |||  |||| || || ||| || |||||||||||||||| |||  ||||||||||| ||||||    
T  6542966 acacaaccccacaaaaccggcttctgaggtgatgattgcccccacttataaacacattgtcagaccatctcttatccgatgtg 6543048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 122 - 285
Target Start/End: Original strand, 4868736 - 4868899
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    |||||||||||||| | |||||||||||| |||||||||| ||| |||  | ||| || ||||| ||||||||||||||   ||||  ||||||||  ||    
T  4868736 ataaatggtgggtggcccgataacggaaacctgatagcaggtggcccagcggatcttggaggaggctctgataccatcttagaaatcgtggttgggccta 4868835  T
Q  222 acacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattgccagg 285  Q
    ||||||||   ||||||   |||  |||| ||||| ||| || |||||||||||||||||||||    
T  4868836 acacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacacattgccagg 4868899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 122 - 309
Target Start/End: Complemental strand, 9705181 - 9704994
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    |||||||||||||| | |||||| ||||| |||||||||| ||| ||||  |||| || ||||| ||||||||||||||   ||||  ||||||||  ||    
T  9705181 ataaatggtgggtggcccgataatggaaacctgatagcaggtggcccaacaaatcttggaggaggctctgataccatcttagaaatggtggttgggccta 9705082  T
Q  222 acacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    ||||||||   ||||||  ||||  |||| || || ||| || |||||||||||||||| ||||  || || |||| |||||||||||    
T  9705081 acacaaccccacaaaaccgacttgtgaggtgatgattgcccccacttataaacacattgtcaggctatgtcctatccgatgtgagact 9704994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 15082043 - 15082114
Alignment:
Q  99 gactagacatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaa 170  Q
    |||| |||||||| |||||||| |||||||||||||| | |||||| ||||| |||||||||| ||||||||    
T  15082043 gactggacatctgaagcgtgaacataaatggtgggtggcccgataatggaaacctgatagcaggtggtccaa 15082114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 309
Target Start/End: Original strand, 12319722 - 12319784
Alignment:
Q  247 gaggcgaggactgcaccaacttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    |||||||||  ||| || |||||||||||||||| || |||||||||||||| ||||||||||    
T  12319722 gaggcgagggttgcccccacttataaacacattgtcatgtcatctcttatctaatgtgagact 12319784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 12648567 - 12648482
Alignment:
Q  115 cgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatct 200  Q
    |||||| ||||||||| ||||||||||||  |||||  ||||||||||| |||||||| ||| | | |||| ||||||||| ||||    
T  12648567 cgtgaacataaatggtaggtgactcgatagtggaaacttgatagcagatagtccaatggatcttaacggaggctctgatacaatct 12648482  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 12885069 - 12885028
Alignment:
Q  268 tataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  12885069 tataaacacattgtcaggtcatctcttaactgatgtgagact 12885028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 8001496 - 8001580
Alignment:
Q  145 cggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtataacacaacc 229  Q
    |||||| |||||||||| ||| |||| | ||| | |||||||||||||||||||||   ||||| ||||||||  ||||||||||    
T  8001496 cggaaacctgatagcaggtggcccaacggatctttaaggagactctgataccatcttagaaattgtggttgggcctaacacaacc 8001580  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 27773782 - 27773838
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcat 178  Q
    |||||| |||||||| ||||||||||||||||||||||| || ||  ||||||||||    
T  27773782 ataaatagtgggtgattcgataacggaaatctgatagcaaatagtttaatgaatcat 27773838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 31729371 - 31729427
Alignment:
Q  172 gaatcatgaaggagactctgataccatctataaaattatggttgggtataacacaac 228  Q
    ||||| |||| |||||||||||| |||||  |||||| |||||||||||||||||||    
T  31729371 gaatcttgaatgagactctgatatcatcttaaaaattttggttgggtataacacaac 31729427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 7638643 - 7638700
Alignment:
Q  252 gaggactgcaccaacttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    ||||| ||| || |||||||||||||||  ||||||||||| ||||||| ||||||||    
T  7638643 gaggattgcccccacttataaacacattatcaggtcatctcctatctgacgtgagact 7638700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 3713362 - 3713322
Alignment:
Q  263 caacttataaacacattgccaggtcatctcttatctgatgt 303  Q
    |||||||||||||||||| ||||||||| | ||||||||||    
T  3713362 caacttataaacacattgtcaggtcatcacctatctgatgt 3713322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 3823322 - 3823278
Alignment:
Q  265 acttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    ||||||||||| |||  |||||||||||||||| |||||||||||    
T  3823322 acttataaacaaattatcaggtcatctcttatccgatgtgagact 3823278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 39620276 - 39620175
Alignment:
Q  99 gactagacatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccat 198  Q
    ||||||||||||||||| || |  |||||||||||||||||||||||| ||||| |||||||| ||| ||||   ||| || ||||| ||||||||||||    
T  39620276 gactagacatctggagcatgtacctaaatggtgggtgactcgataacgtaaatcggatagcaggtggcccaacagatcttggaggaggctctgataccat 39620177  T
Q  199 ct 200  Q
    ||    
T  39620176 ct 39620175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 122 - 309
Target Start/End: Complemental strand, 16239752 - 16239565
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    |||||||||||||| |||||||||||||| |||||||||| ||| | || | ||| || ||||| ||||||||||||||   ||||  ||||||||  ||    
T  16239752 ataaatggtgggtggctcgataacggaaacctgatagcaggtggccaaacggatcttggaggaggctctgataccatcttagaaatcgtggttgggccta 16239653  T
Q  222 acacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    |||||| |   ||||||   |||  |||| ||||  ||| || |||||||||||||||| |||| ||| || |||| |||||||||||    
T  16239652 acacaatcccacaaaaccggcttgtgaggtgaggtttgcccccacttataaacacattgtcaggccatgtcctatccgatgtgagact 16239565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 309
Target Start/End: Original strand, 30179698 - 30179818
Alignment:
Q  189 ctgataccatctataaaattatggttgggtataacacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattgccaggtca 288  Q
    ||||||||||||   ||||  |||||||| |||||| || | | ||||||| ||||  |||| ||||| | | || |||||||||||||||| |||||||    
T  30179698 ctgataccatcttataaatcgtggttgggcataacataatcctacaaaactgacttgtgaggtgaggattacccccacttataaacacattgtcaggtca 30179797  T
Q  289 tctcttatctgatgtgagact 309  Q
    |||||||||||||||| ||||    
T  30179798 tctcttatctgatgtgggact 30179818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 33640314 - 33640128
Alignment:
Q  15 gtgaagattgctccaacttataaaaacattgttaaatcatttttatccgatatgagactctttaacacacccccttcatgcg-aggactagacatctgga 113  Q
    ||||||||||  || ||||||||| ||||||| | | |  | ||||||||  || ||||||||||||||||||  ||| ||  |||||| ||||||||||    
T  33640314 gtgaagattgtccccacttataaacacattgtcagacctctcttatccgacgtgtgactctttaacacacccctctcacgcctaggactggacatctgga 33640215  T
Q  114 gcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatct 200  Q
    || || | ||||||||||||||   | ||||||||||| ||||| ||| |||||||| | ||  || ||||| |||||||| |||||    
T  33640214 gcatggacataaatggtgggtggtccaataacggaaatatgataacaggtggtccaacggattttggaggaggctctgatatcatct 33640128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 122 - 228
Target Start/End: Original strand, 37246777 - 37246882
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    ||||||||||| |||| |||||||| ||| || ||||||| |||||||||||||| ||||  ||||| |||||||||||  ||||| || |||| || ||    
T  37246777 ataaatggtggatgacccgataacgaaaacctaatagcaggtggtccaatgaatcttgaa-tagactttgataccatcttaaaaatcattgttgagtcta 37246875  T
Q  222 acacaac 228  Q
    |||||||    
T  37246876 acacaac 37246882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 4155484 - 4155378
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    ||||| |||||||| | ||||| |||||| |||||||||| ||| |||||||||| || || |||||||||||||||||   ||||  ||||||||  ||    
T  4155484 ataaacggtgggtggcccgatagcggaaacctgatagcaggtggcccaatgaatcttggag-agactctgataccatcttagaaatcgtggttgggccta 4155386  T
Q  222 acacaacc 229  Q
    ||||||||    
T  4155385 acacaacc 4155378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 4188445 - 4188533
Alignment:
Q  105 acatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgata 194  Q
    ||||||| |||||||| |||||||  ||||||| |||||||||||| |||||| ||||||  ||||  |||| |||| ||||||||||||    
T  4188445 acatctgaagcgtgaacataaatgacgggtgacccgataacggaaacctgataacagatgacccaaataatcgtgaa-gagactctgata 4188533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 309
Target Start/End: Original strand, 12929987 - 12930238
Alignment:
Q  57 ttatccgatatgagactctttaacacacccccttcatgcg-aggactagacatctggagcgtgaatataaatggtgggtgactcgataacggaaatctga 155  Q
    |||| |||| || ||||||||||||||||| || || ||  |||||| |||||||||||| || | | |||||||||  | || |||||| |||| ||||    
T  12929987 ttattcgatgtgggactctttaacacaccctct-cacgcctaggactggacatctggagcatggacacaaatggtggtggcct-gataacagaaacctga 12930084  T
Q  156 tagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtataacacaaccttgcaaaactaacttaagaggcgagg 255  Q
    |||||| ||| |||| | |||||| ||||| || |||||||||||   ||||  ||||||||  ||||||||||   ||||||   |||  || | |||     
T  12930085 tagcaggtggcccaacggatcatggaggaggctttgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtgaagtgaga 12930184  T
Q  256 actgcaccaacttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    | ||  || || ||| ||||||||| |||||||||||||||| |||||||||||    
T  12930185 attgtccccacatatgaacacattgtcaggtcatctcttatccgatgtgagact 12930238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 275
Target Start/End: Complemental strand, 45828179 - 45828027
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    |||||||||||||| ||||||| |||||| ||| |||||| |||  ||||| ||| || | ||| ||||||||||||||   ||||| |||| |||  ||    
T  45828179 ataaatggtgggtggctcgatagcggaaacctggtagcaggtggcgcaatggatcttgga-gaggctctgataccatcttagaaattgtggtagggccta 45828081  T
Q  222 acacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaaca 275  Q
    |||||||||  ||||||   |||  |||| ||||| ||| ||||||||||||||    
T  45828080 acacaacctcacaaaaccggcttgtgaggtgaggattgccccaacttataaaca 45828027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 229
Target Start/End: Original strand, 1722983 - 1723106
Alignment:
Q  105 acatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataa 204  Q
    ||||||| |||||||| |||||||  ||||| | |||||||||||| |||||| ||| ||| ||||  |||| |||| ||| ||||||||||||||   |    
T  1722983 acatctgaagcgtgaacataaatgacgggtggcccgataacggaaacctgataacaggtggcccaaacaatcgtgaa-gaggctctgataccatcttaga 1723081  T
Q  205 aattatggttgggtataacacaacc 229  Q
    |||  ||||||||  ||||||||||    
T  1723082 aatcgtggttgggcctaacacaacc 1723106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 278
Target Start/End: Original strand, 13574844 - 13575000
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    |||||||||||||||| ||||| |||||| |||||||||| ||| |||||| ||| | |  ||| || ||||||||| |   ||||| ||||||||  ||    
T  13574844 ataaatggtgggtgacacgatagcggaaacctgatagcaggtggcccaatggatcttaactgaggctttgataccatattagaaattgtggttgggccta 13574943  T
Q  222 acacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacat 278  Q
    ||||||||   |||||||  |||  |||| ||||| | | || ||||||||||||||    
T  13574944 acacaaccccacaaaactggcttgtgaggtgaggatttcccccacttataaacacat 13575000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 22775556 - 22775636
Alignment:
Q  120 atataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatct 200  Q
    |||||||||||||||| | ||||| | |||| || ||||||| ||| |||||  ||| |||||||| ||||||||||||||    
T  22775556 atataaatggtgggtggcccgatagcagaaacctaatagcaggtggcccaatagatcttgaaggaggctctgataccatct 22775636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 29575956 - 29576000
Alignment:
Q  265 acttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    |||||||||||||||  |||||||||||||||| |||||||||||    
T  29575956 acttataaacacattctcaggtcatctcttatccgatgtgagact 29576000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 31151006 - 31150926
Alignment:
Q  120 atataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatct 200  Q
    |||||||||||| ||||| |||||||||||| || ||||||  ||| |||| | ||| || ||||| ||||||||||||||    
T  31151006 atataaatggtgagtgacccgataacggaaacctaatagcaagtggcccaacggatcttggaggaggctctgataccatct 31150926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 34992766 - 34992689
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatct 200  Q
    |||||||||||||||| ||| | |||||| |||||||||| ||| |||||| | | || | ||||||||||||||||||    
T  34992766 ataaatggtgggtgacccgacagcggaaacctgatagcaggtggcccaatggaccttgga-gagactctgataccatct 34992689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 1662513 - 1662472
Alignment:
Q  119 aatataaatggtgggtgactcgataacggaaatctgatagca 160  Q
    |||||||||||||||||| | ||||| |||||||||||||||    
T  1662513 aatataaatggtgggtgatttgataatggaaatctgatagca 1662472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 45138850 - 45138907
Alignment:
Q  247 gaggcgaggactgcaccaacttataaacacattgccaggtcatctcttatctgatgtg 304  Q
    |||| ||||| ||| || ||||||||||||||||||||  ||||||||||| ||||||    
T  45138850 gaggtgaggattgcccccacttataaacacattgccagaccatctcttatccgatgtg 45138907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 39620344 - 39620300
Alignment:
Q  265 acttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    |||||||||||||||| ||||||||| | |||| |||||||||||    
T  39620344 acttataaacacattgtcaggtcatcacctatccgatgtgagact 39620300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 310
Target Start/End: Original strand, 45138950 - 45139082
Alignment:
Q  178 tgaaggagactctgataccatctataaaattatggttgggtataacacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacaca 277  Q
    |||||||| ||||||||||||||   ||||  ||||||||| | ||||||||   ||||||   |||  |||| ||||| ||| || |||||| |||||     
T  45138950 tgaaggaggctctgataccatcttagaaatcgtggttgggtcttacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttattaacacg 45139049  T
Q  278 ttgccaggtcatctcttatctgatgtgagacta 310  Q
    ||| |||| ||||||||||| |||||| |||||    
T  45139050 ttgtcaggccatctcttatcagatgtgggacta 45139082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 290
Target Start/End: Complemental strand, 41790818 - 41790652
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    |||||||||||||| ||||||| |||||| |||||||||| ||| |||||| ||| |||| ||| ||||||||||||||   ||||  ||||||||  ||    
T  41790818 ataaatggtgggtggctcgatagcggaaacctgatagcaggtggcccaatggatcttgaa-gaggctctgataccatcttagaaatcgtggttgggccta 41790720  T
Q  222 acacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattgccaggtcatc 290  Q
    ||||||||   ||||||   |||| |||| ||||| ||  || |||||||||||||||| |||||||||    
T  41790719 acacaacc-cacaaaaccggcttatgaggtgaggattgtccccacttataaacacattgtcaggtcatc 41790652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 309
Target Start/End: Original strand, 24532352 - 24532531
Alignment:
Q  129 gtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtataacacaac 228  Q
    ||||||| | ||||| |||||| |||||||||| ||| |||||| ||| |||||| | ||||||||||||||   |||| |||||||||  |||||||||    
T  24532352 gtgggtggcccgatagcggaaacctgatagcaggtggcccaatggatcttgaagggg-ctctgataccatcttagaaatcatggttgggcctaacacaac 24532450  T
Q  229 cttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    |   ||||||   |||  |||| || || ||| || |||||||||||||||| |||| |||||| |||| |||||| ||||    
T  24532451 cccacaaaaccggcttgtgaggtgatgattgcccccacttataaacacattgtcaggccatctcctatccgatgtgggact 24532531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 280
Target Start/End: Complemental strand, 12317223 - 12317049
Alignment:
Q  105 acatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataa 204  Q
    ||||||| |||||||| ||||||| ||||||   |||||||||||| |||||| ||| ||| |||| ||||| |||| ||| ||||||||||||||   |    
T  12317223 acatctgaagcgtgaacataaatgatgggtggtccgataacggaaacctgataacaggtggcccaaagaatcgtgaa-gagtctctgataccatcttaga 12317125  T
Q  205 aattatggttgggtataacacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattg 280  Q
    |||  ||||||||  |||||||| |   |||||  | |||| |||| ||||| ||| || ||||||||||||||||    
T  12317124 aatcgtggttgggcctaacacaatcccacaaaatcagcttatgaggtgaggattgcccccacttataaacacattg 12317049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 5932108 - 5932214
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    |||||||||||||| | ||||||||||||  |||||| || |||||||||| ||| || | ||| ||||||||||||||  |||||  ||||||||  ||    
T  5932108 ataaatggtgggtggcccgataacggaaacgtgatagtaggtggtccaatggatcttgga-gaggctctgataccatcttaaaaatggtggttgggccta 5932206  T
Q  222 acacaacc 229  Q
    ||||||||    
T  5932207 acacaacc 5932214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 11232353 - 11232459
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    |||||||||||||||||||||| |||||| |||||| ||| ||| |||||| ||| || | ||| ||||||||||||||   ||||  ||||||||  ||    
T  11232353 ataaatggtgggtgactcgatagcggaaacctgataacaggtggcccaatggatcttgga-gaggctctgataccatcttagaaatggtggttgggccta 11232451  T
Q  222 acacaacc 229  Q
    ||||||||    
T  11232452 acacaacc 11232459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 297
Target Start/End: Complemental strand, 20301421 - 20301247
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    ||||||||||||||   ||||| |||||| |||||||||| ||| |||||| ||| |||| ||| ||||||||||||||   ||||  ||||||||  ||    
T  20301421 ataaatggtgggtggtccgatagcggaaacctgatagcaggtggcccaatggatcttgaa-gaggctctgataccatcttagaaatcgtggttgggccta 20301323  T
Q  222 acacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattgccaggtcatctcttatc 297  Q
    |||||||||  ||||||   |||  ||||  |||| ||| || |||||||||||||||| || | |||||| ||||    
T  20301322 acacaacctcacaaaacgggcttgtgaggttaggattgcccccacttataaacacattgtcaagccatctcatatc 20301247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 297
Target Start/End: Complemental strand, 21088053 - 21087879
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    ||||||||||||||   ||||| |||||| |||||||||| ||| |||||| ||| |||| ||| ||||||||||||||   ||||  ||||||||  ||    
T  21088053 ataaatggtgggtggtccgatagcggaaacctgatagcaggtggcccaatggatcttgaa-gaggctctgataccatcttagaaatcgtggttgggccta 21087955  T
Q  222 acacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattgccaggtcatctcttatc 297  Q
    |||||||||  ||||||   |||  ||||  |||| ||| || |||||||||||||||| || | |||||| ||||    
T  21087954 acacaacctcacaaaacgggcttgtgaggttaggattgcccccacttataaacacattgtcaagccatctcatatc 21087879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 218
Target Start/End: Original strand, 8466639 - 8466743
Alignment:
Q  114 gcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggt 213  Q
    ||||| |||||||||||||||| || |||| |||||| |||||||||| ||| |||||| ||| ||||  |  || |||||||||||   ||||| ||||    
T  8466639 gcgtgcatataaatggtgggtggcttgatagcggaaacctgatagcaggtggcccaatggatcttgaaccaagctttgataccatcttagaaattgtggt 8466738  T
Q  214 tgggt 218  Q
    |||||    
T  8466739 tgggt 8466743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 304
Target Start/End: Original strand, 4873756 - 4873795
Alignment:
Q  265 acttataaacacattgccaggtcatctcttatctgatgtg 304  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  4873756 acttataaacacattgtcaggtcatctcttatccgatgtg 4873795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 198
Target Start/End: Complemental strand, 16050196 - 16050114
Alignment:
Q  115 cgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccat 198  Q
    |||||| |||||||  ||||| | ||||||||||||||||||| ||| ||| |||| ||||| |||| ||| ||||||||||||    
T  16050196 cgtgaacataaatgacgggtggcccgataacggaaatctgataacaggtggcccaaagaatcgtgaa-gaggctctgataccat 16050114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 3157168 - 3157218
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatg 172  Q
    |||||||||||||| | ||||| |||||| |||||||||| ||||||||||    
T  3157168 ataaatggtgggtgtcccgatagcggaaacctgatagcaggtggtccaatg 3157218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 3961467 - 3961509
Alignment:
Q  267 ttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    |||||||||||||| ||| ||||||||||||||||||| ||||    
T  3961467 ttataaacacattgtcagctcatctcttatctgatgtgggact 3961509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 18004253 - 18004330
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatct 200  Q
    |||||||||||||| | ||||| |||||| |||||||||| ||| |||||| ||| || | ||| ||||||||||||||    
T  18004253 ataaatggtgggtggcccgatagcggaaacctgatagcaggtggcccaatggatcttgga-gaggctctgataccatct 18004330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 4873590 - 4873663
Alignment:
Q  97 aggactagacatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaa 170  Q
    |||||| ||||| |||||| || | |||||||||||||||  | |||||||||| |||||||||| ||| ||||    
T  4873590 aggactggacatttggagcatggacataaatggtgggtgatccaataacggaaacctgatagcagctggcccaa 4873663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 17477008 - 17476916
Alignment:
Q  105 acatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccat 198  Q
    ||||||| |||||||| |||||||  ||||| | |||||||||||| |||||| ||| ||| ||||  |||| |||| ||| ||||||||||||    
T  17477008 acatctgaagcgtgaacataaatgacgggtggcccgataacggaaacctgataacaggtggcccaaacaatcgtgaa-gaggctctgataccat 17476916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 22638232 - 22638289
Alignment:
Q  252 gaggactgcaccaacttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    ||||| ||| || |||||||||||| ||| |||| ||||||||||| |||||||||||    
T  22638232 gaggattgcccctacttataaacactttgacaggccatctcttatccgatgtgagact 22638289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 39743472 - 39743380
Alignment:
Q  105 acatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccat 198  Q
    ||||||| |||||||| |||||||  ||||| | |||||||||||| |||||| ||| ||| ||||  |||| |||| ||| ||||||||||||    
T  39743472 acatctgaagcgtgaacataaatgacgggtggcccgataacggaaacctgataacaggtggcccaaacaatcgtgaa-gaggctctgataccat 39743380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 6462977 - 6462937
Alignment:
Q  265 acttataaacacattgccaggtcatctcttatctgatgtga 305  Q
    |||||||||||||||| || ||||||||||||| |||||||    
T  6462977 acttataaacacattgtcaagtcatctcttatccgatgtga 6462937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 27439431 - 27439514
Alignment:
Q  72 ctctttaacacacccccttcatgcg-aggactagacatctggagcgtgaatataaatggtgggtgactcgataacggaaatctga 155  Q
    |||||||||||||||| |||| ||| ||| || ||||| |||||| || | |||||||||||| | |||||||||||||| ||||    
T  27439431 ctctttaacacacccc-ttcacgcgcaggtctggacatttggagcatggacataaatggtgggaggctcgataacggaaacctga 27439514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 104 - 200
Target Start/End: Complemental strand, 4464474 - 4464378
Alignment:
Q  104 gacatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatct 200  Q
    |||||||  |||||| | ||| ||||||||||||||||||||||||| |||||||||  ||  |||||| ||| |||||||| ||||||||||||||    
T  4464474 gacatctaaagcgtgcacatatatggtgggtgactcgataacggaaacctgatagcatgtgacccaatggatcttgaaggaggctctgataccatct 4464378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 122 - 309
Target Start/End: Complemental strand, 35788820 - 35788633
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    |||||||||||||| |  ||||||||||| |||||||||| ||| |||| | ||| || ||||| ||||||||||||||   ||||  ||||||||  ||    
T  35788820 ataaatggtgggtggcctgataacggaaacctgatagcaggtggcccaacggatcttggaggaggctctgataccatcttagaaatcgtggttgggccta 35788721  T
Q  222 acacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    ||||||||    |||||   |||  |||| ||||| ||| || |||||||||||||||| |||| ||| || ||||||||||| ||||    
T  35788720 acacaaccccataaaaccggcttgtgaggtgaggattgcccccacttataaacacattgtcaggccatgtcctatctgatgtgggact 35788633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 122 - 285
Target Start/End: Original strand, 35819052 - 35819214
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    |||||||||||||||| ||||| |||||| |||||||||| ||| |||||| ||| | |  ||||||||||| ||||||  |||||  ||||||||  ||    
T  35819052 ataaatggtgggtgacccgatagcggaaacctgatagcaggtggcccaatggatc-ttagagagactctgatgccatcttaaaaatcgtggttgggccta 35819150  T
Q  222 acacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattgccagg 285  Q
    |||||||||  |||||||  |||  |||||||||| ||| || || |||||||| |||| ||||    
T  35819151 acacaacctcacaaaactggcttgtgaggcgaggattgcccccacatataaacaaattgtcagg 35819214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 227
Target Start/End: Original strand, 36686065 - 36686169
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    |||||||||||||| | ||||| |||||| |||||||||| ||| ||| |||||| |||| ||| |||| |||| ||||  ||||| ||||||||| |||    
T  36686065 ataaatggtgggtggcccgatagcggaaacctgatagcaggtggcccattgaatcttgaa-gaggctcttatactatcttaaaaatcatggttgggcata 36686163  T
Q  222 acacaa 227  Q
    ||||||    
T  36686164 acacaa 36686169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 12869178 - 12869293
Alignment:
Q  113 agcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatgg 212  Q
    |||||||| |||||||  ||||||| |||||||||||| |||||| ||| ||| ||||  |||| |||| ||||||||||||||||||   ||||  |||    
T  12869178 agcgtgaacataaatgacgggtgacccgataacggaaacctgataacaggtgggccaaaaaatcgtgaa-gagactctgataccatcttagaaatcgtgg 12869276  T
Q  213 ttgggtataacacaacc 229  Q
    |||||  ||||||||||    
T  12869277 ttgggcctaacacaacc 12869293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 229
Target Start/End: Original strand, 40716527 - 40716651
Alignment:
Q  105 acatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataa 204  Q
    ||||||| |||||||| |||||||  ||||| | |||||||||||| |||||||||| ||| |||| | ||| || | ||| ||||||||||||||   |    
T  40716527 acatctgaagcgtgaacataaatgacgggtggcccgataacggaaacctgatagcaggtggcccaacggatcgtggatgaggctctgataccatcttaga 40716626  T
Q  205 aattatggttgggtataacacaacc 229  Q
    ||  |||||||||  ||||||||||    
T  40716627 aaccatggttgggcctaacacaacc 40716651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 25716061 - 25716014
Alignment:
Q  114 gcgtgaatataaatggtgggtgactcgataacggaaatctgatagcag 161  Q
    |||||||||||||||||||||||||||||  ||||||| |||||||||    
T  25716061 gcgtgaatataaatggtgggtgactcgattgcggaaatttgatagcag 25716014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 9908772 - 9908832
Alignment:
Q  139 cgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatct 200  Q
    ||||||||||||||||||||||| |||||||||  ||| || | ||||||||||||||||||    
T  9908772 cgataacggaaatctgatagcaggtggtccaatagatcttgga-gagactctgataccatct 9908832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 6218457 - 6218413
Alignment:
Q  265 acttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    ||||||||||||||||  |||||||||| ||||||||||||||||    
T  6218457 acttataaacacattgttaggtcatctcctatctgatgtgagact 6218413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 280
Target Start/End: Complemental strand, 9685575 - 9685401
Alignment:
Q  105 acatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataa 204  Q
    ||||||| |||||||| |||||||  ||||| | |||||||||||| |||||| ||| ||| |||| ||||  |||| ||| |||||||||||| |   |    
T  9685575 acatctgaagcgtgaacataaatgacgggtggcccgataacggaaacctgataacaggtggcccaaagaattgtgaa-gaggctctgataccatattaga 9685477  T
Q  205 aattatggttgggtataacacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattg 280  Q
    |||  ||||||||  |||||||||||  ||||||  ||||  |||| ||||| ||  || ||||||||||| ||||    
T  9685476 aatcgtggttgggcctaacacaacctcacaaaaccgacttgtgaggtgaggattggccccacttataaacaaattg 9685401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 13637686 - 13637615
Alignment:
Q  57 ttatccgatatgagactctttaacacacccccttcatg-cgaggactagacatctggagcgtgaatataaat 127  Q
    |||||| ||||||||||||||||||||||||| ||| | | |||||| |||||||| ||| || ||||||||    
T  13637686 ttatcccatatgagactctttaacacacccccctcacgcccaggactggacatctgtagcatggatataaat 13637615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 24513282 - 24513332
Alignment:
Q  121 tataaatggtgggtgactcgataacggaaatctgatagcagatggtccaat 171  Q
    |||| ||||||||||||  |||| ||||| |||||||||||||||||||||    
T  24513282 tatagatggtgggtgacctgatagcggaagtctgatagcagatggtccaat 24513332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 30530090 - 30530163
Alignment:
Q  126 atggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatct 200  Q
    |||||||||||| ||||| ||||||||||||||||| ||| | |||| ||| || | ||| ||||||||||||||    
T  30530090 atggtgggtgacgcgatagcggaaatctgatagcaggtggcctaatggatcttgga-gaggctctgataccatct 30530163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 33108031 - 33107929
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    ||||||||||||||   |||||||||||| || ||||||| ||| |||||||||  |||||||  || ||||||||| |  |||||  ||||||||| ||    
T  33108031 ataaatggtgggtggtccgataacggaaaccttatagcaggtggcccaatgaattttgaaggaagctttgataccatattaaaaatcgtggttgggttta 33107932  T
Q  222 aca 224  Q
    |||    
T  33107931 aca 33107929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 35796901 - 35796978
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatct 200  Q
    |||||||||||||| | ||||| |||||| |||||||||| | |||||||| |||  ||| ||| ||||||||||||||    
T  35796901 ataaatggtgggtggcccgatagcggaaacctgatagcaggtagtccaatggatctcgaa-gaggctctgataccatct 35796978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 4455791 - 4455832
Alignment:
Q  203 aaaattatggttgggtataacacaaccttgcaaaactaactt 244  Q
    |||||||||||||||| ||||||||||||| |||||| ||||    
T  4455791 aaaattatggttgggtctaacacaaccttgtaaaactcactt 4455832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 89
Target Start/End: Complemental strand, 8902848 - 8902819
Alignment:
Q  60 tccgatatgagactctttaacacaccccct 89  Q
    ||||||||||||||||||||||||||||||    
T  8902848 tccgatatgagactctttaacacaccccct 8902819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 89
Target Start/End: Complemental strand, 8903096 - 8903067
Alignment:
Q  60 tccgatatgagactctttaacacaccccct 89  Q
    ||||||||||||||||||||||||||||||    
T  8903096 tccgatatgagactctttaacacaccccct 8903067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 301
Target Start/End: Original strand, 11036516 - 11036613
Alignment:
Q  204 aaattatggttgggtataacacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattgccaggtcatctcttatctgat 301  Q
    ||||| ||||||||| ||||||||||  |||||||   |||  |||| || || ||| ||||||||||||||||||| || |||||| | ||||||||    
T  11036516 aaattgtggttgggtctaacacaaccccgcaaaaccggcttgtgaggtgatgattgccccaacttataaacacattgtcatgtcatcacctatctgat 11036613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 20253529 - 20253484
Alignment:
Q  265 acttataaacacattgccagg-tcatctcttatctgatgtgagact 309  Q
    |||||||||||||||| |||| |||||||||||| |||||||||||    
T  20253529 acttataaacacattgtcaggatcatctcttatccgatgtgagact 20253484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 21498738 - 21498646
Alignment:
Q  105 acatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccat 198  Q
    ||||||| |||||||| |||||||  ||||| | |||||||||||| |||||| ||| ||| ||||  |||| |||| ||| ||||||||||||    
T  21498738 acatctgaagcgtgaacataaatgacgggtggcccgataacggaaacctgataacaggtggcccaaacaatcgtgaa-gaggctctgataccat 21498646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 50543489 - 50543534
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtc 167  Q
    |||||||||||||| | |||||||||||| |||||||||| |||||    
T  50543489 ataaatggtgggtggcccgataacggaaacctgatagcaggtggtc 50543534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 54054945 - 54055037
Alignment:
Q  105 acatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccat 198  Q
    ||||||| |||||||| |||||||  ||||| | |||||||||||| |||||| ||| ||| ||||  |||| |||| ||| ||||||||||||    
T  54054945 acatctgaagcgtgaacataaatgacgggtggcccgataacggaaacctgataacaggtggcccaaaaaatcgtgaa-gaggctctgataccat 54055037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 400631 - 400675
Alignment:
Q  265 acttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    |||||||||||||||| |||  |||||| ||||||||||||||||    
T  400631 acttataaacacattgtcagaccatctcatatctgatgtgagact 400675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 18528283 - 18528327
Alignment:
Q  265 acttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    ||||||||||||||||||| | |||||| ||| ||||||||||||    
T  18528283 acttataaacacattgccatgccatctcgtatttgatgtgagact 18528327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 25324191 - 25324263
Alignment:
Q  120 atataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctga 192  Q
    |||||||||||||||| | ||||| ||||||  ||||||||| ||| |||||| ||| || ||||| ||||||    
T  25324191 atataaatggtgggtggcccgatagcggaaacttgatagcaggtggcccaatggatcttggaggaggctctga 25324263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 28245685 - 28245760
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccat 198  Q
    |||||||||||||| | ||||| |||||| |||||||||| ||| |||||| ||| || | ||| ||||||||||||    
T  28245685 ataaatggtgggtggcccgatagcggaaacctgatagcaggtggcccaatggatcttgga-gaggctctgataccat 28245760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 44118925 - 44118969
Alignment:
Q  265 acttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    |||||||||||||||| |||| ||||||||||| |||||| ||||    
T  44118925 acttataaacacattgtcaggccatctcttatccgatgtgggact 44118969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 198
Target Start/End: Original strand, 26561971 - 26562072
Alignment:
Q  96 gaggactagacatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgatac 195  Q
    ||||| || ||||||| |||||||| ||||||| ||||||||  ||||||||||| |||||| ||| ||| |||| ||||| |||| |||||||||||||    
T  26561971 gaggattacacatctgaagcgtgaacataaatgatgggtgacctgataacggaaacctgataacaggtggcccaaagaatcgtgaa-gagactctgatac 26562069  T
Q  196 cat 198  Q
    |||    
T  26562070 cat 26562072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 280
Target Start/End: Original strand, 26239857 - 26239997
Alignment:
Q  140 gataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtataacacaaccttgcaaaact 239  Q
    ||||||||||| |||||||||| ||| |||| | ||| || ||||| ||||||||||||||   ||||| ||||||||| ||||||||||   ||| ||     
T  26239857 gataacggaaacctgatagcaggtggcccaacggatcttggaggaggctctgataccatcttagaaattgtggttgggtctaacacaaccccacaatacc 26239956  T
Q  240 aacttaagaggcgaggactgcaccaacttataaacacattg 280  Q
     ||||  |||| ||||| ||| || ||||||||||||||||    
T  26239957 gacttgtgaggtgaggattgcccccacttataaacacattg 26239997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 31257174 - 31257266
Alignment:
Q  105 acatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccat 198  Q
    ||||||| |||||||| |||||||  ||||| | |||||||||||| |||||| ||||||| |||| ||||| ||||| || ||||||||||||    
T  31257174 acatctgaagcgtgaacataaatgacgggtggcccgataacggaaacctgataacagatggcccaaagaatcgtgaagaag-ctctgataccat 31257266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 28080683 - 28080639
Alignment:
Q  265 acttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    |||||||||||||||| |||||||||||||||| |||||||||||    
T  28080683 acttataaacacattgtcaggtcatctcttatccgatgtgagact 28080639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 289
Target Start/End: Complemental strand, 25620296 - 25620130
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    |||||||||||||| | | ||| |||||| |||||||||| ||| |||||| ||| || || || ||||||||||||||   ||||  ||||||||  ||    
T  25620296 ataaatggtgggtggcccaatagcggaaacctgatagcaggtggcccaatggatcttggag-aggctctgataccatcttagaaatcgtggttgggccta 25620198  T
Q  222 acacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattgccaggtcat 289  Q
    ||||||||   ||||||   |||  |||| ||||| ||| || |||||||||||||||| ||||||||    
T  25620197 acacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacacattgtcaggtcat 25620130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 18826412 - 18826504
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttg 215  Q
    |||||||||||||| ||||||| ||||||| |||||||||||||  || || ||| |||| ||| |||||||| |||||   ||||||||||||    
T  18826412 ataaatggtgggtggctcgatagcggaaatttgatagcagatggctcagtggatcttgaa-gaggctctgatatcatcttagaaattatggttg 18826504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 309
Target Start/End: Original strand, 36277150 - 36277336
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    ||||||||||||||   ||||| |||||| ||||||| || ||| |||||| ||| || || || |||||||| |||||   ||||  ||||||||  ||    
T  36277150 ataaatggtgggtggtccgatagcggaaacctgatagtaggtggcccaatggatcttggag-aggctctgataacatcttagaaatcgtggttgggacta 36277248  T
Q  222 acacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    ||||||||   |||||   ||||  |||| ||||| ||| || |||||||||||||||| |||| ||| |||| || |||||||||||    
T  36277249 acacaaccccacaaaatcgacttgtgaggtgaggattgcccccacttataaacacattgtcaggccatgtcttgtccgatgtgagact 36277336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 285
Target Start/End: Original strand, 2544364 - 2544533
Alignment:
Q  113 agcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatgg 212  Q
    |||||||| |||||||  ||||| |||||||||||||| || ||| ||| ||| |||| ||||| |||| ||||  |||||||||| |  |||||  |||    
T  2544364 agcgtgaacataaatgacgggtggctcgataacggaaacctaataacaggtggcccaaagaatcgtgaa-gaga--ctgataccatattaaaaatcgtgg 2544460  T
Q  213 ttgggtataacacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattgccagg 285  Q
    |||||  ||||||||||   ||||||  ||||  |||| ||||| ||| || ||||||||||| |||| ||||    
T  2544461 ttgggcctaacacaaccccacaaaaccgacttgtgaggtgaggattgcccccacttataaacaaattgtcagg 2544533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 309
Target Start/End: Complemental strand, 6634934 - 6634829
Alignment:
Q  204 aaattatggttgggtataacacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattgccaggtcatctcttatctgatgt 303  Q
    |||| |||||||||  ||||||||||   |||||||| |||| |||| ||||| ||| || ||||||||||| |||| |||| || ||| || | |||||    
T  6634934 aaatcatggttgggcctaacacaaccccacaaaactagcttatgaggtgaggattgcccccacttataaacaaattgtcaggccaactcctaaccgatgt 6634835  T
Q  304 gagact 309  Q
    ||||||    
T  6634834 gagact 6634829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 48243422 - 48243467
Alignment:
Q  184 agactctgataccatctataaaattatggttgggtataacacaacc 229  Q
    |||||||||||||||||  ||||| |||||||||| ||||||||||    
T  48243422 agactctgataccatcttaaaaatcatggttgggtctaacacaacc 48243467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 24612789 - 24612757
Alignment:
Q  55 ttttatccgatatgagactctttaacacacccc 87  Q
    ||||||||||| |||||||||||||||||||||    
T  24612789 ttttatccgatgtgagactctttaacacacccc 24612757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 227
Target Start/End: Original strand, 36993225 - 36993336
Alignment:
Q  115 cgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggtt 214  Q
    |||||| |||||| |||||||   | ||| ||||||||||||||||  ||| |||||| ||| |||| ||| ||||||||||||||   |||| ||||||    
T  36993225 cgtgaacataaatagtgggtggtccaatagcggaaatctgatagcacgtggcccaatggatcttgaa-gaggctctgataccatcttagaaatcatggtt 36993323  T
Q  215 gggtataacacaa 227  Q
    || | ||||||||    
T  36993324 ggatctaacacaa 36993336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 5815 - 5709
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    ||||| ||||||||| ||||||||||||| |||||||||| ||| |||||| ||  |||| ||| ||||||||||||||   ||||  ||||||||| ||    
T  5815 ataaacggtgggtgattcgataacggaaacctgatagcaggtggcccaatggattttgaa-gaggctctgataccatcttagaaatcgtggttgggtcta 5717  T
Q  222 acacaacc 229  Q
    ||||||||    
T  5716 acacaacc 5709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 37496340 - 37496202
Alignment:
Q  28 caacttataaaaacattgttaaatcat-ttttatccgatatgagactctttaacacacccccttcatg-cgaggactagacatctggagcgtgaatataa 125  Q
    ||||||||||||||||||||| |||||  |||||  ||||||||||||||||||||| | |  ||||| | || ||| ||||| ||||||||| ||||||    
T  37496340 caacttataaaaacattgttagatcatcctttatttgatatgagactctttaacaca-ctctgtcatgcctagaactggacatgtggagcgtggatataa 37496242  T
Q  126 atggtgggtgactcgataacg-gaaatctgatagcagatg 164  Q
    || ||| |||||| |||||||  |||| ||||||||||||    
T  37496241 attgtgagtgacttgataacgaaaaatttgatagcagatg 37496202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 35772189 - 35772083
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    |||||||||||||| | ||||| |||||| |||||||||||||| |||||| ||| || || || ||||||||||||||   ||||  ||||||||  ||    
T  35772189 ataaatggtgggtggcccgatagcggaaacctgatagcagatggcccaatggatcttg-agaaggctctgataccatcttagaaatcgtggttgggccta 35772091  T
Q  222 acacaacc 229  Q
    ||||||||    
T  35772090 acacaacc 35772083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 4112699 - 4112776
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatct 200  Q
    ||||||||||||||  |||||| |||||| |||||||||| |||||||||| ||| || | ||| ||||||||||||||    
T  4112699 ataaatggtgggtggttcgatagcggaaacctgatagcaggtggtccaatggatcttgga-gaggctctgataccatct 4112776  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 3169943 - 3169851
Alignment:
Q  105 acatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccat 198  Q
    ||||||| |||||||| |||||||  ||||| | |||||||||||| |||||| ||| ||| | || ||||| ||||||| |||||||||||||    
T  3169943 acatctgaagcgtgaacataaatgacgggtggcccgataacggaaacctgataacaggtggcctaaagaatcgtgaagga-actctgataccat 3169851  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 9146787 - 9146880
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttg 215  Q
    |||||||||||||||| ||||| ||| || || || |||| |||||||||| ||| || || || ||||||||||||||   ||||||||||||    
T  9146787 ataaatggtgggtgacccgatagcggtaaccttattgcagttggtccaatggatcttggagaaggctctgataccatcttagaaattatggttg 9146880  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 5109412 - 5109333
Alignment:
Q  120 atataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatct 200  Q
    |||||||||||||||||| |||||| ||||| ||||||| || |||  ||| ||||| || | ||||||||||||||||||    
T  5109412 atataaatggtgggtgacccgataatggaaacctgatagaaggtggctcaacgaatcttgga-gagactctgataccatct 5109333  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 17412585 - 17412541
Alignment:
Q  265 acttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    |||||||||||||||| ||||||||||| ||||||||||| ||||    
T  17412585 acttataaacacattgtcaggtcatctcctatctgatgtgggact 17412541  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 38733309 - 38733234
Alignment:
Q  120 atataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatct 200  Q
    ||||||||||||||||    |||| |||||| |||||||||| |||||||||| ||| || || |||||||||||||||||    
T  38733309 atataaatggtgggtg----gatagcggaaacctgatagcaggtggtccaatggatcttggag-agactctgataccatct 38733234  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 230
Target Start/End: Original strand, 5953642 - 5953768
Alignment:
Q  104 gacatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctata 203  Q
    ||||| ||||| ||||||||||||| |||||| | |||||| ||||| |||| ||||| ||| | || | ||| || | ||| ||||||||||||||  |    
T  5953642 gacatgtggagtgtgaatataaatgttgggtggcccgataatggaaacctgaaagcaggtggcctaacggatcttggatgaggctctgataccatcttaa 5953741  T
Q  204 aaattatggttgggtataacacaacct 230  Q
    |||||  |||||||  ||| |||||||    
T  5953742 aaattgaggttgggcctaatacaacct 5953768  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 34264552 - 34264594
Alignment:
Q  265 acttataaacacattgccaggtcatctcttatctgatgtgaga 307  Q
    ||||||||| |||||| ||| ||||||||||||||||||||||    
T  34264552 acttataaatacattgtcagatcatctcttatctgatgtgaga 34264594  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 35892216 - 35892143
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgatacc 196  Q
    |||||||||||||| | ||||| | ||||| ||||||||  ||| |||||||||| |||| ||||||||||||||    
T  35892216 ataaatggtgggtgccccgatagcagaaatatgatagcaagtggcccaatgaatcttgaa-gagactctgatacc 35892143  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 17208716 - 17208671
Alignment:
Q  120 atataaatggtgggtgactcgataacggaaatctgatagcagatgg 165  Q
    |||||||||||||||| | ||||| |||||| ||||||||||||||    
T  17208716 atataaatggtgggtggcccgatagcggaaacctgatagcagatgg 17208671  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 26177075 - 26177018
Alignment:
Q  115 cgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatg 172  Q
    |||| ||||||||||||||||   ||||| ||||||||||||||||| ||| ||||||    
T  26177075 cgtggatataaatggtgggtggtccgatagcggaaatctgatagcaggtggcccaatg 26177018  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 51589169 - 51589092
Alignment:
Q  105 acatctggagcgtgaatataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaag 182  Q
    ||||||| |||||||| |||||||  ||||| | |||||||||||| |||||| ||| ||| |||| ||||| |||||    
T  51589169 acatctgaagcgtgaacataaatgacgggtggcccgataacggaaacctgataacaggtggcccaaagaatcgtgaag 51589092  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 309
Target Start/End: Original strand, 52650776 - 52650881
Alignment:
Q  204 aaattatggttgggtataacacaaccttgcaaaactaacttaagaggcgaggactgcaccaacttataaacacattgccaggtcatctcttatctgatgt 303  Q
    ||||||||||||||  ||||||||||   |||||| | |||  |||| ||||| ||| || |||||||||||||||| | || |||||| |||| |||||    
T  52650776 aaattatggttgggcctaacacaaccccacaaaaccagcttgtgaggtgaggattgcccccacttataaacacattgtccggccatctcctatccgatgt 52650875  T
Q  304 gagact 309  Q
    | ||||    
T  52650876 gggact 52650881  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 17452727 - 17452791
Alignment:
Q  247 gaggcgaggactgcaccaacttataaacacattgccaggtcatctcttatctgatgtgagactag 311  Q
    |||| ||||| ||| || ||||||||| |||||| |||| ||| |||||||||||||| ||||||    
T  17452727 gaggtgaggattgcccccacttataaatacattgtcaggccatgtcttatctgatgtgggactag 17452791  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 21626405 - 21626449
Alignment:
Q  265 acttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    ||||||||||| |||| |||| |||||||||||||||||| ||||    
T  21626405 acttataaacatattgtcaggccatctcttatctgatgtgggact 21626449  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 40079188 - 40079132
Alignment:
Q  247 gaggcgaggactgcaccaacttataaacacattgccaggtcatctcttatctgatgt 303  Q
    |||| ||||| ||| || |||||||||||||||| ||||||||||| |||| |||||    
T  40079188 gaggtgaggattgcccccacttataaacacattgtcaggtcatctcctatccgatgt 40079132  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 42586504 - 42586548
Alignment:
Q  265 acttataaacacattgccaggtcatctcttatctgatgtgagact 309  Q
    ||||||| |||||||| |||| ||||||||||| |||||||||||    
T  42586504 acttatatacacattgtcaggccatctcttatccgatgtgagact 42586548  T

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Target: scaffold0519 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 2076 - 1970
Alignment:
Q  122 ataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaatcatgaaggagactctgataccatctataaaattatggttgggtata 221  Q
    |||||||||||||||||||||| |||||| |||||| ||| ||| |||||| ||| || | ||| ||||||||||||||   ||||  ||||||||  ||    
T  2076 ataaatggtgggtgactcgatagcggaaacctgataacaggtggcccaatggatcttgga-gaggctctgataccatcttagaaatggtggttgggccta 1978  T
Q  222 acacaacc 229  Q
    ||||||||    
T  1977 acacaacc 1970  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 87731 - 87786
Alignment:
Q  120 atataaatggtgggtgactcgataacggaaatctgatagcagatggtccaatgaat 175  Q
    |||||||||||||||||| |||||  ||||| |||||||||| ||| |||||||||    
T  87731 atataaatggtgggtgacccgatagtggaaacctgatagcaggtggcccaatgaat 87786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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