View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7852_high_1 (Length: 584)
Name: NF7852_high_1
Description: NF7852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7852_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 18 - 563
Target Start/End: Complemental strand, 10461836 - 10461291
Alignment:
| Q |
18 |
ggaataacaggtttcagcgcggaagctacagcaactttccgattatctccaatggtaaagttttttataacattaaggtaataaggtttgcttatcatgc |
117 |
Q |
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| T |
10461836 |
ggaataacaggtttcagcgcggaagctacagcaactttccgattatctccaatggtaaagttttttataacattaaggtaataaggtttgcttatcatgc |
10461737 |
T |
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| Q |
118 |
tgcattttcatattatttaatcattgtttgacaattcccctttgaatattttctgctcttaaatatatcaattgatgctatagctatacttgtcttatat |
217 |
Q |
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| T |
10461736 |
tgcattttcatattatttaatcattgtttgacaattcccctttgaatattttctgctcttaaatatatcaattgatgctatagctatacttgtcttatat |
10461637 |
T |
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| Q |
218 |
cagtgcatccaaagacaaaacaggggatgacctggagattacagcttgttactataattaattatcactcttcactataattctgtcttcttcttgtgtc |
317 |
Q |
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| T |
10461636 |
cagtgcatccaaagacaaaacaggggatgacctggagattacagcttgttactataattaattatcactctttactataattctgtcttcttcttgtgtc |
10461537 |
T |
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| Q |
318 |
actgatgattgttttgacgtactaattacaatcacatgcatttatttaggccctgaattaaatataacatggttttgtttggtttgatttcattactgaa |
417 |
Q |
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| T |
10461536 |
actgatgattgttttgacgtactaattacaatcacatgcatttatttaggccctgaattaaatataacatggttttgtttggtttgatttcattactgaa |
10461437 |
T |
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| Q |
418 |
caatgttccccaaaataaaaaagattgtgtggtcaaggtacagtatagtactatgctctgtacctaaatgtcctttatttacatgatatattgttattaa |
517 |
Q |
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| T |
10461436 |
caatgttccccaaaataaaaaagattgtgtggtcaaggtacagtatagtactatgctctgtacctaaatgtcctttatttacatgatatattgttattaa |
10461337 |
T |
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| Q |
518 |
attcccattaaattatgaatcaaataatttgatgttacaatcattt |
563 |
Q |
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| T |
10461336 |
attcccattaaattatgaatcaaataatttgatgttacaatcattt |
10461291 |
T |
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