View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7852_high_2 (Length: 344)

Name: NF7852_high_2
Description: NF7852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7852_high_2
NF7852_high_2
[»] chr6 (3 HSPs)
chr6 (19-334)||(31938512-31938827)
chr6 (78-158)||(13534969-13535049)
chr6 (65-99)||(32671548-32671582)
[»] chr5 (2 HSPs)
chr5 (19-236)||(9388971-9389183)
chr5 (69-141)||(19810358-19810430)
[»] chr7 (4 HSPs)
chr7 (236-334)||(1336668-1336766)
chr7 (46-113)||(1336890-1336957)
chr7 (19-56)||(1336959-1336996)
chr7 (188-236)||(1336816-1336864)
[»] chr4 (2 HSPs)
chr4 (44-118)||(5638984-5639058)
chr4 (132-166)||(5638949-5638983)


Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 31938827 - 31938512
Alignment:
Q  19 gtcttttccaccgttatcttgatttcattttcatttttaagccaagaatattcaggccctggaattgtatgaatgaatgttcatacaactgatgacatta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||    
T  31938827 gtcttttccaccgttatcttgatttcattttcatttttaagccaagaatattcaggccatggaattgtatgaatgaatgttcgtacagctgatgacatta 31938728  T
Q  119 ttgatcatgatttaatattcacatttcggtgatgattttgcaagatttgatttatctgataacaaaaatatatggcaaatgggaatgtttaaaaacagtg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31938727 ttgatcatgatttaatattcacatttcggtgatgattttgcaagatttgatttatctgataacaaaaaaatatggcaaatgggaatgtttaaaaacagtg 31938628  T
Q  219 attgattgaatgacacttcaactcctatactatttttcttgctaaattgaaagtattaagtttggtttaggaaaacagaacacaagctcttatttttatg 318  Q
     |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31938627 tttgattgaatgacacttcaactcctatactatttttcttgttaaattgaaagtattaagattggtttaggaaaacagaacacaagctcttatttttatg 31938528  T
Q  319 tcaggcctcgcctttg 334  Q
    ||||||||||||||||    
T  31938527 tcaggcctcgcctttg 31938512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 13535049 - 13534969
Alignment:
Q  78 tggaattgtatgaatgaatgttcatacaactgatgacattattgatcatgatttaatattcacatttcggtgatgattttg 158  Q
    ||||||||||||| ||||||||  ||||| ||||||||||||| || ||||||||  ||||||| || |||||||||||||    
T  13535049 tggaattgtatgattgaatgtttgtacaattgatgacattatttataatgatttatgattcacactttggtgatgattttg 13534969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 99
Target Start/End: Complemental strand, 32671582 - 32671548
Alignment:
Q  65 aatattcaggccctggaattgtatgaatgaatgtt 99  Q
    |||||||||||||||||||||||||||||||||||    
T  32671582 aatattcaggccctggaattgtatgaatgaatgtt 32671548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 9389183 - 9388971
Alignment:
Q  19 gtcttttccaccgttatcttgatttcattttcatttttaagccaagaatattcaggccctggaattgtatgaatgaatgttcatacaactgatgacatta 118  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||    
T  9389183 gtcttttccaccgttattttgatttcattttcatttttaagccaagaatattcaagccctggaattgtatgaatgaatgtttgtacaactgatgacatta 9389084  T
Q  119 ttgatcatgatttaatattcacatttcggtgatgattttgcaagatttgatttatctgataacaaaaatatatggcaaatgggaatgttt-aaaaacagt 217  Q
    || || ||||||||||||||||||||||||||||||||||||||     |||||||||| |||||| |  |||||||||| | ||||||| |||||| ||    
T  9389083 tttataatgatttaatattcacatttcggtgatgattttgcaag-----atttatctgaaaacaaaca-gtatggcaaatagaaatgtttgaaaaactgt 9388990  T
Q  218 gattgattgaatgacactt 236  Q
    |||||||| ||||||||||    
T  9388989 gattgatttaatgacactt 9388971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 19810358 - 19810430
Alignment:
Q  69 ttcaggccctggaattgtatgaatgaatgttcatacaactgatgacattattgatcatgatttaatattcaca 141  Q
    |||||||||||||||||||||| ||||||||  ||||| |||||| |||||| || |||| |||| |||||||    
T  19810358 ttcaggccctggaattgtatgattgaatgtttgtacaattgatgatattatttataatgacttaagattcaca 19810430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 236 - 334
Target Start/End: Complemental strand, 1336766 - 1336668
Alignment:
Q  236 tcaactcctatactatttttcttgctaaattgaaagtattaagtttggtttaggaaaacagaacacaagctcttatttttatgtcaggcctcgcctttg 334  Q
    |||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| |||||||    
T  1336766 tcaattcctatactatttgtcttgttaaattgaaagtattaagtttggtttaggaaaacaaaacacaagctcatatttttacgtcaggccttgcctttg 1336668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 1336957 - 1336890
Alignment:
Q  46 ttttcatttttaagccaagaatattcaggccctggaattgtatgaatgaatgttcatacaactgatga 113  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  1336957 ttttcatttttaagccaataatattcagggcctggaattgtatgaatgaatgttcctacaactgatga 1336890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 1336996 - 1336959
Alignment:
Q  19 gtcttttccaccgttatcttgatttcattttcattttt 56  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  1336996 gtcttttcaaccgttatcttgttttcattttcattttt 1336959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 1336864 - 1336816
Alignment:
Q  188 atatggcaaatgggaatgtttaaaaacagtgattgattgaatgacactt 236  Q
    ||||||||||||| |||||||||||||  ||||||||| | ||||||||    
T  1336864 atatggcaaatggaaatgtttaaaaactatgattgatttactgacactt 1336816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 5639058 - 5638984
Alignment:
Q  44 cattttcatttttaagccaagaatattcaggccctggaattgtatgaatgaatgttcatacaactgatgacatta 118  Q
    ||||||||||||||||||||||  |||||||| ||||||||||||||||| |||||  | ||| |||||||||||    
T  5639058 cattttcatttttaagccaagagcattcaggctctggaattgtatgaatggatgtttgttcaattgatgacatta 5638984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 5638983 - 5638949
Alignment:
Q  132 aatattcacatttcggtgatgattttgcaagattt 166  Q
    |||||||||| ||||||||||||||||||||||||    
T  5638983 aatattcacacttcggtgatgattttgcaagattt 5638949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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