View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7852_high_3 (Length: 291)
Name: NF7852_high_3
Description: NF7852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7852_high_3 |
 | |
|
| [»] scaffold0090 (1 HSPs) |
| | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
| [»] scaffold0485 (1 HSPs) |
| | |
|
| [»] scaffold0566 (1 HSPs) |
| | |
|
| [»] scaffold0222 (1 HSPs) |
| | |
|
| [»] scaffold0220 (2 HSPs) |
| | |
|
| [»] scaffold0113 (1 HSPs) |
| | |
|
| [»] scaffold0026 (1 HSPs) |
| | |
|
| [»] scaffold0012 (3 HSPs) |
| | |
|
| [»] scaffold1184 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 27045697 - 27045424
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27045697 |
catcaccaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
27045598 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgggttttaaggtatgacaaagtagtataaaagtttaga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27045597 |
aataatcaaacaattagctctaatgattctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttaga |
27045498 |
T |
|
| Q |
209 |
taatagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27045497 |
taatagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat |
27045424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 21785827 - 21785986
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||||||||| ||| ||||||||||||||||| ||||||||| || ||||| ||||||| |||||||||||| || ||||||||||| |
|
|
| T |
21785827 |
catcaccaccatcatcaccattattgtgtacctgtgggttagtgccaacataa---aagttttctaccaccttcggattagtaatatctgaattaggtag |
21785923 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatg |
171 |
Q |
| |
|
|| |||||| ||||||| || ||| |||||| ||| |||||| |||| || |||| |||| |
|
|
| T |
21785924 |
aaaaatcaagaaattagcattattgactctccactcatgttggtacttgttagaagggccatg |
21785986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 22626469 - 22626567
Alignment:
| Q |
68 |
ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtaggg |
166 |
Q |
| |
|
||||| |||||| ||||||||||||| ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||||||||| |||| |
|
|
| T |
22626469 |
ttttctaccaccaccggattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgagaaggg |
22626567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 15349237 - 15349501
Alignment:
| Q |
18 |
catcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15349237 |
catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa |
15349336 |
T |
|
| Q |
118 |
acaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgggttttaaggtatgacaaagtagtataaaagtttagataatagttc |
217 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15349337 |
acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttc |
15349436 |
T |
|
| Q |
218 |
tcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15349437 |
tcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat |
15349501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 14687153 - 14687435
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcatt---ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattagg |
105 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14687153 |
catcaccaccatcatcatcatcattatcttgtacctgtgggttagtaccaacataaagcaaattttccaccgcctccggattagtaatgtccgaattagg |
14687252 |
T |
|
| Q |
106 |
tagaataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgggttttaaggtatgacaaagt------agtataa |
199 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| |||||| |
|
|
| T |
14687253 |
tagcataatcaaacaattagctctaataattctccatttatattggtaattgtgagtagggtcatgggttctaaggaatgacaaagtagtgagagtatat |
14687352 |
T |
|
| Q |
200 |
aagtttagataatagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat |
282 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14687353 |
aagtttagataatagttctcctctatcctcttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat |
14687435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 9 - 278
Target Start/End: Original strand, 42711159 - 42711434
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42711159 |
catcaccaccatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
42711258 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgggttttaaggtatgacaaagt------agtataaaag |
202 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| ||||||||||||| |||||| ||||||||||| ||||| | |||||||| |||||| ||| |
|
|
| T |
42711259 |
aataatcaaacaattagttctaataattctccattcatattggtaattatgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataag |
42711358 |
T |
|
| Q |
203 |
tttagataatagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtga |
278 |
Q |
| |
|
||| ||||||| || ||||||||||||||||||| |||||||| |||||||| |||| |||||||||||||||||| |
|
|
| T |
42711359 |
tttggataataattttcatctatcctcttgatcctttgattcacactcaccctaaacctcttagcaataaaagtga |
42711434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 45240241 - 45240404
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| | |||||| ||||| |
|
|
| T |
45240241 |
catcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatattcgaatttggtag |
45240340 |
T |
|
| Q |
109 |
aataatcaaacaa-ttagctctaatgattctccatccatattggtaattgtgagtagggtcatg |
171 |
Q |
| |
|
||||||||| ||| ||||| || ||| |||||| |||||||||||||||||| |||| |||| |
|
|
| T |
45240341 |
aataatcaagcaatttagcgttattgactctccactcatattggtaattgtgagaagggccatg |
45240404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 10 - 171
Target Start/End: Original strand, 11497998 - 11498159
Alignment:
| Q |
10 |
atcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtaga |
109 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| | |||||||||||| |
|
|
| T |
11497998 |
atcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatttgaattaggtaga |
11498097 |
T |
|
| Q |
110 |
ataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatg |
171 |
Q |
| |
|
|||||||| |||||| | | ||| |||||| ||||||||||||||| || ||||||||| |
|
|
| T |
11498098 |
ataatcaagcaattaacataattgactctccactcatattggtaattgttagaagggtcatg |
11498159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 18290850 - 18290701
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||| | |||||||||||||||||| || ||||||||||| |
|
|
| T |
18290850 |
catcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctatcacctccggattagtaatatctgaattaggtag |
18290751 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgt |
158 |
Q |
| |
|
||||||||| |||| || || ||| | |||| ||||||||||||||| |
|
|
| T |
18290750 |
aataatcaataaatttgcattattgaatttccactcatattggtaattgt |
18290701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 10629577 - 10629417
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| || ||||| ||| ||| |||||||||||| || ||||||||||| |
|
|
| T |
10629577 |
catcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataa---aagttttctaccgccttcggattagtaatatctgaattaggtag |
10629481 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgg |
172 |
Q |
| |
|
||||||||| ||||||| || ||| |||||| |||||||| ||||||||| |||| ||||| |
|
|
| T |
10629480 |
aataatcaagaaattagcattattgactctccactcatattgggaattgtgagaagggccatgg |
10629417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 52 - 161
Target Start/End: Original strand, 11918125 - 11918233
Alignment:
| Q |
52 |
accaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccatccatattgg |
151 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||| ||||| ||||||| ||||||||||||||||||| ||||||| ||| ||| | |||| |||||||| |
|
|
| T |
11918125 |
accaacataaaacaatttttccaccaccttcgggttagttatgtccggattaggtagaataatcaaa-aattagccctattgactttccactcatattgg |
11918223 |
T |
|
| Q |
152 |
taattgtgag |
161 |
Q |
| |
|
|||||||||| |
|
|
| T |
11918224 |
taattgtgag |
11918233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 540143 - 540416
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
540143 |
catcaccaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
540242 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgggttttaaggtatgacaaagtagtataaaagtttaga |
208 |
Q |
| |
|
||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
540243 |
aataatcaaacaattagctttaatgattctcctttcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttaga |
540342 |
T |
|
| Q |
209 |
taatagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
540343 |
taatagttctcatctatcctcttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat |
540416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 16327160 - 16327430
Alignment:
| Q |
18 |
catcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa |
117 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16327160 |
catcaccaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaatagtcaa |
16327259 |
T |
|
| Q |
118 |
acaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgggttttaaggtatgacaaagt------agtataaaagtttagataa |
211 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||| |||||| |||||||||||| |
|
|
| T |
16327260 |
acaattagctctaataattctccattcatattggtaattgtgagtagggtcatgggttataaggaaggacaaagtagtaagagtatataagtttagataa |
16327359 |
T |
|
| Q |
212 |
tagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat |
282 |
Q |
| |
|
||||| || ||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| |
|
|
| T |
16327360 |
tagttttcctctatcctcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat |
16327430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 9581723 - 9581453
Alignment:
| Q |
18 |
catcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9581723 |
catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataatcaa |
9581624 |
T |
|
| Q |
118 |
acaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgggttttaaggtatgacaaagt------agtataaaagtttagataa |
211 |
Q |
| |
|
|||||||| |||||| || |||||| ||||||| |||||||||||| ||||||||||| ||||| | |||||||| |||||| |||||| ||||| |
|
|
| T |
9581623 |
acaattagttctaataatcctccattcatattgataattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataa |
9581524 |
T |
|
| Q |
212 |
tagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat |
282 |
Q |
| |
|
|| || |||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| |
|
|
| T |
9581523 |
taattttcatctatcctcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat |
9581453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 9729575 - 9729305
Alignment:
| Q |
18 |
catcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa |
117 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9729575 |
catcatcaccatcatcttgtacctgtggattagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaataatcaa |
9729476 |
T |
|
| Q |
118 |
acaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgggttttaaggtatgacaaagt------agtataaaagtttagataa |
211 |
Q |
| |
|
|||||||| |||||| || |||||| ||||||| |||||||||||| ||||||||||| ||||| | |||||||| |||||| |||||| ||||| |
|
|
| T |
9729475 |
acaattagttctaataatcctccattcatattgataattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataa |
9729376 |
T |
|
| Q |
212 |
tagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat |
282 |
Q |
| |
|
|| || |||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| |
|
|
| T |
9729375 |
taattttcatctatcctcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat |
9729305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 4311557 - 4311279
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| |||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4311557 |
catcaccaccatcatcaccatcatcttgtacatgtgggttagtaccaacgtaaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
4311458 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgggttttaaggtatgacaaagt------agtataaaag |
202 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||| |||| | |||||||| |||||| ||| |
|
|
| T |
4311457 |
aataatcaaacaattagctctaataattctccattcatattggtaattgtgagtagggccatgggttctaagaaaggacaaagtagtgagagtatataag |
4311358 |
T |
|
| Q |
203 |
tttagataatagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat |
282 |
Q |
| |
|
| ||||||||||||| | ||||||||||||||| ||||||||| |||| ||||||||||| ||| |||||| |||||||| |
|
|
| T |
4311357 |
tctagataatagttcccctctatcctcttgatctcttgattcacactc-ccccaaacttcctagaaataaaggtgatgat |
4311279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 8783482 - 8783752
Alignment:
| Q |
18 |
catcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa |
117 |
Q |
| |
|
||||| |||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
8783482 |
catcaccaccatgatcttgtacatgtgggttagtaccaacataaagcaaattttccaccacctccggattagttatgtccgaattagggagaataatcaa |
8783581 |
T |
|
| Q |
118 |
acaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgggttttaaggtatgacaaagt------agtataaaagtttagataa |
211 |
Q |
| |
|
| ||||| || |||| ||||||| | |||||| |||||||||||||||| |||||||| ||||| | | |||||| |||||| |||| ||||||| |
|
|
| T |
8783582 |
aaaattatctgtaataattctcctttcatatttgtaattgtgagtagggccatgggttgtaaggaagggcaaagtagtgagagtatataagtctagataa |
8783681 |
T |
|
| Q |
212 |
tagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat |
282 |
Q |
| |
|
|||||| | ||||||| |||||||| |||||||| |||||||||||||||| |||||||||| |||||||| |
|
|
| T |
8783682 |
tagttcccctctatccccttgatccattgattcacactcaccccaaacttcctagcaataaaggtgatgat |
8783752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 119 - 282
Target Start/End: Original strand, 14223144 - 14223313
Alignment:
| Q |
119 |
caattagctctaatgattctccatccatattggtaattgtgagtagggtcatgggttttaaggtatgacaaagtagt------ataaaagtttagataat |
212 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| ||||||||||||| |
|
|
| T |
14223144 |
caattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggctttaaggaatgacaaagtagtgagagtatataagtttagataat |
14223243 |
T |
|
| Q |
213 |
agttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat |
282 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14223244 |
agttctcctctttcctcttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat |
14223313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 23513899 - 23513736
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23513899 |
catcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaacaaagttttctaccacctccggattagtaatgtccgaattaggtag |
23513800 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgg |
172 |
Q |
| |
|
||||||||| ||||||| || ||| |||||| ||||| |||||||||||| |||| ||||| |
|
|
| T |
23513799 |
aataatcaagtaattagcattattgactctccactcatataggtaattgtgagaagggccatgg |
23513736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 13741251 - 13741088
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||| ||||| |||||||||| | ||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
13741251 |
catcaccaccatcatcaccatcattgtgtacctgtggattagtgccaacataaacatagttttctaccacctccgaattagtaatgtccgaattaggtag |
13741152 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgg |
172 |
Q |
| |
|
||||||||| |||||| | || ||| |||||| |||||||||||||||||| |||| ||||| |
|
|
| T |
13741151 |
aataatcaagcaattatcattattgactctccactcatattggtaattgtgagaagggccatgg |
13741088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 4462102 - 4462244
Alignment:
| Q |
20 |
tcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaac |
119 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||| ||| ||||| ||| || |||||||||||||||||||| |
|
|
| T |
4462102 |
tcatcaccatcatcatgtaccagtgggttagtaccaatataaagcaaattttccaccaccttcgggttagttatgaacggattaggtagaataatcaaac |
4462201 |
T |
|
| Q |
120 |
aattagctctaatgattctccatccatattggtaattgtgagt |
162 |
Q |
| |
|
||| ||||||||||||| || | ||||||||| ||||||||| |
|
|
| T |
4462202 |
aatgagctctaatgattttctaatcatattggtcattgtgagt |
4462244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 12565833 - 12565670
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| ||||||||||||||||||||| ||| ||||| |||||||||| ||||||||| || ||||||||| |
|
|
| T |
12565833 |
catcaccaccatcatcaccatcattgtgtaccggtgggttagtaccaacataaaccaagttttctaccacctccgaattagtaatatctgaattaggtta |
12565734 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgg |
172 |
Q |
| |
|
||||||||| ||||||| || ||| |||||| ||||||||||||||| || |||| ||||| |
|
|
| T |
12565733 |
aataatcaagaaattagcattattgactctccactcatattggtaattgttagaagggccatgg |
12565670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 10439722 - 10439888
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||| ||||||| | | |||||||| || ||||||||||| |
|
|
| T |
10439722 |
catcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccaccttcagcttagtaatatctgaattaggtag |
10439821 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgggtt |
175 |
Q |
| |
|
||||||||| ||||| | || ||| |||||| |||||||||||||||||| |||| ||||||| |
|
|
| T |
10439822 |
aataatcaagaaattatcattattgactctccactcatattggtaattgtgagaagggctatgggtt |
10439888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 5395959 - 5395811
Alignment:
| Q |
20 |
tcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaac |
119 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
5395959 |
tcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaaga |
5395860 |
T |
|
| Q |
120 |
aattagctctaatgattctccatccatattggtaattgtgagtagggtc |
168 |
Q |
| |
|
||||||| || ||| ||||| ||| ||||||||||| || |||||| |
|
|
| T |
5395859 |
aattagcattattgacgctccactcattttggtaattgttagaagggtc |
5395811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 14223108 - 14223146
Alignment:
| Q |
18 |
catcatcaccatcattttgtacctgtgggttagtaccaa |
56 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14223108 |
catcatcaccatcatcttgtacctgtgggttagtaccaa |
14223146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 22062895 - 22063168
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22062895 |
catcaccaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
22062994 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgggttttaaggtatgacaaagtagtataaaagtttaga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
22062995 |
aataatcaaacaattagctctaatgattctccatgcatgttggtaattgtgagtagagtcatggtttttaaggaatgacaaagtagtataaaagtttaga |
22063094 |
T |
|
| Q |
209 |
taatagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22063095 |
taatagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat |
22063168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 26 - 282
Target Start/End: Original strand, 19586975 - 19587222
Alignment:
| Q |
26 |
ccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattag |
125 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
19586975 |
ccatcatcttgtacctgtgggttaataccaacataaatcaaattttccaccacctccagattag---------------gtagaataatcaaacaattag |
19587059 |
T |
|
| Q |
126 |
ctctaatgattctccatccatattggtaattgtgagtagggtcatgggttttaaggtatgacaaagtagt------ataaaagtttagataatagttctc |
219 |
Q |
| |
|
||||||| ||||||| | |||||||||||||| |||||| |||||||| ||||| | ||||||||||| ||| |||| ||||||||||||| |
|
|
| T |
19587060 |
ctctaataattctccgtttatattggtaattgtaagtaggtccatgggttctaaggaaggacaaagtagtgagagtatataagtgtagataatagttcct |
19587159 |
T |
|
| Q |
220 |
atctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat |
282 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| |
|
|
| T |
19587160 |
ctctatcctcttgatcccttgattcagactcaccccaaacttcctagcaataaaggtgatgat |
19587222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 18188953 - 18189116
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||| | |||||||||||||| |
|
|
| T |
18188953 |
catcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtattatccgaattaggtag |
18189052 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgg |
172 |
Q |
| |
|
||||||||| |||||||| || ||| |||||| |||||||||||||||||| |||||||||| |
|
|
| T |
18189053 |
aataatcaagcaattagcattattgactctccactcatattggtaattgtgagaagggtcatgg |
18189116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 9 - 181
Target Start/End: Original strand, 23519135 - 23519307
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| |||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| ||| |||||| |
|
|
| T |
23519135 |
catcaccaccatcatcaccatcatcatgtacccgtgggttagttccaacataaagcaaattttccaccatctccggattagttatgtccaaataaggtag |
23519234 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgggttttaagg |
181 |
Q |
| |
|
|||||||||||||||||| ||| | | | ||| |||||||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
23519235 |
aataatcaaacaattagccctatttactttccgcacatattggtagttgtgagaagggtcatgggttataagg |
23519307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 17818346 - 17818194
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||| ||||||| |||||||||||| || ||||||||||| |
|
|
| T |
17818346 |
catcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctacggattagtaatatctgaattaggtag |
17818247 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgag |
161 |
Q |
| |
|
||||||||| ||||||| || ||| |||||| |||||||||||||||||| |
|
|
| T |
17818246 |
aataatcaagaaattagcattattgactctccactcatattggtaattgtgag |
17818194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 18852847 - 18852742
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||| |||| ||||||||||||||| || ||||||||||| |
|
|
| T |
18852847 |
catcaccaccatcattaccatcattttgtacctgtgggttagtgccaacataa---aaattttctaccatctccggattagtaatatctgaattaggtag |
18852751 |
T |
|
| Q |
109 |
aataatcaa |
117 |
Q |
| |
|
||||||||| |
|
|
| T |
18852750 |
aataatcaa |
18852742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 29685366 - 29685293
Alignment:
| Q |
9 |
catcatcaccatcatcaccat---cattttgtacctgtgggttagtaccaacataaagcaaattttccaccacc |
79 |
Q |
| |
|
||||||||||||||||||||| | | |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29685366 |
catcatcaccatcatcaccatggtcttcttgtacctgtgggttagtactaacataaagcaaattttccaccacc |
29685293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 24390285 - 24390326
Alignment:
| Q |
35 |
tgtacctgtgggttagtaccaacataaagcaaattttccacc |
76 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
24390285 |
tgtacctgtttgttagtaccagcataaagcaaattttccacc |
24390326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 282
Target Start/End: Complemental strand, 29685112 - 29685084
Alignment:
| Q |
254 |
ccaaacttcttagcaataaaagtgatgat |
282 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
29685112 |
ccaaacttcttagcaataaaagtgatgat |
29685084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 6813692 - 6813419
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6813692 |
catcaccaccatcattaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
6813593 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgggttttaaggtatgacaaagtagtataaaagtttaga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
6813592 |
aataatcaaacaattagctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagtagtataaaagtttaga |
6813493 |
T |
|
| Q |
209 |
taatagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6813492 |
taatagttctcatctatcctcttgatcccttgattcatactcacctcaaacttcttagcaataaaagtgatgat |
6813419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 12777897 - 12778170
Alignment:
| Q |
18 |
catcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12777897 |
catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccgaattagtaatgtccgaattaggtagaataatcaa |
12777996 |
T |
|
| Q |
118 |
acaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgggttttaaggtatgacaaagt------agtataaaagtttagataa |
211 |
Q |
| |
|
|||||||| |||||| ||||||||| ||||||| |||||||||||||||||||||||| ||||| | |||||||| |||| | |||||| ||||| |
|
|
| T |
12777997 |
acaattagttctaataattctccattcatattgataattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtaaataagtttggataa |
12778096 |
T |
|
| Q |
212 |
tagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgatgtc |
285 |
Q |
| |
|
|| || || ||||||||||||||||||||||||| |||||||| |||| ||||||||||||||| ||||||||| |
|
|
| T |
12778097 |
taattttcctctatcctcttgatcccttgattcacactcaccctaaacctcttagcaataaaagggatgatgtc |
12778170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 26 - 282
Target Start/End: Complemental strand, 15024516 - 15024254
Alignment:
| Q |
26 |
ccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattag |
125 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| | ||||||||||||||| |||||||||| |
|
|
| T |
15024516 |
ccatcatcttgtacatgtggattagtaccaacataatgcaaattttccaccacctccggattagttatgtctggattaggtagaataataaaacaattag |
15024417 |
T |
|
| Q |
126 |
ctctaatgattctccatccatattggtaattgtgagtagggtcatgggttttaaggtatgacaaagt------agtataaaagtttagataatagttctc |
219 |
Q |
| |
|
||||| | ||||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||| |||||| |||| ||||||||||| | | |
|
|
| T |
15024416 |
ctctattaattctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtatagataatagtaccc |
15024317 |
T |
|
| Q |
220 |
atctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat |
282 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15024316 |
ctctatcctcttgatcccttgattcacactcaccccaaactttctagcaataaaagtgatgat |
15024254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 13090197 - 13090351
Alignment:
| Q |
15 |
caccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataat |
114 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||| | ||||| ||||||| |||||||||||| || ||||||||||||||||| |
|
|
| T |
13090197 |
caccatcatcaccatcattgtgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataat |
13090293 |
T |
|
| Q |
115 |
caaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgg |
172 |
Q |
| |
|
||| ||||||| || ||| || ||| |||||||| ||||||||| |||| ||||| |
|
|
| T |
13090294 |
caagaaattagcattattgactcaccactcatattgggaattgtgagaagggccatgg |
13090351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 20562168 - 20562017
Alignment:
| Q |
20 |
tcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaac |
119 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| ||| | | ||||| |||||||||| ||||||||| || |||||||||||||||||||| |
|
|
| T |
20562168 |
tcatcaccatcattgtgtacctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaaga |
20562069 |
T |
|
| Q |
120 |
aattagctctaatgattctccatccatattggtaattgtgagtagggtcatg |
171 |
Q |
| |
|
|||||| || ||| |||||| |||||||||||||||||| |||| |||| |
|
|
| T |
20562068 |
aattagtagtattgactctccactcatattggtaattgtgagaagggccatg |
20562017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 20564476 - 20564325
Alignment:
| Q |
20 |
tcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaac |
119 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| ||| | | ||||| |||||||||| ||||||||| || |||||||||||||||||||| |
|
|
| T |
20564476 |
tcatcaccatcattgtgtacctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaaga |
20564377 |
T |
|
| Q |
120 |
aattagctctaatgattctccatccatattggtaattgtgagtagggtcatg |
171 |
Q |
| |
|
|||||| || ||| |||||| |||||||||||||||||| |||| |||| |
|
|
| T |
20564376 |
aattagtagtattgactctccactcatattggtaattgtgagaagggccatg |
20564325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 9362347 - 9362501
Alignment:
| Q |
15 |
caccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataat |
114 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||| || ||||| ||||||| |||||||||||| | ||||||||||||||||| |
|
|
| T |
9362347 |
caccatcatcaccatcattgtgtacctgtgggttagtgccaacataa---aagttttctaccaccttcggattagtaatatttgaattaggtagaataat |
9362443 |
T |
|
| Q |
115 |
caaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgg |
172 |
Q |
| |
|
||| ||||||| || ||| |||||| |||||||| |||||||| |||| ||||| |
|
|
| T |
9362444 |
caagaaattagcattattgactctccactcatattggggattgtgagaagggccatgg |
9362501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 20559860 - 20559709
Alignment:
| Q |
20 |
tcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaac |
119 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| |||||| ||| | | ||||| |||||||||| ||||||||| || |||||||||||||||||||| |
|
|
| T |
20559860 |
tcatcaccatcattgtgtatctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaaga |
20559761 |
T |
|
| Q |
120 |
aattagctctaatgattctccatccatattggtaattgtgagtagggtcatg |
171 |
Q |
| |
|
|||||| || ||| |||||| |||||||||||||||||| |||| |||| |
|
|
| T |
20559760 |
aattagtagtattgactctccactcatattggtaattgtgagaagggccatg |
20559709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 13096540 - 13096380
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||| |||||||| || ||||| ||||||| |||||||||||| || ||||||||||| |
|
|
| T |
13096540 |
catcaccaccatcatcaccatcattgtgtacctgtgggttagtgtcaacataa---aagttttctaccaccttcggattagtaatatctgaattaggtag |
13096444 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgg |
172 |
Q |
| |
|
||||||||| |||||| || ||| |||||| ||| |||| ||||||||| |||| ||||| |
|
|
| T |
13096443 |
aataatcaagaaattagaattattgactctccactcatgttgggaattgtgagaagggccatgg |
13096380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 3246897 - 3246968
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacct |
80 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
3246897 |
catcaccaccatcatcaccatcatcttgtacctgtgggttagtacaaaaataaaacaaattttccaccacct |
3246968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 20153607 - 20153493
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| ||||||| |||||||||| || ||||| ||||||||| |||||| ||| || || |||||| |
|
|
| T |
20153607 |
catcaccaccatcatcaccatcattgtgtacctgtaggttagtgccaacataaacaaagttttctaccacctccagattaggaatatctga---aggtag |
20153511 |
T |
|
| Q |
109 |
aataatcaaacaattagc |
126 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
20153510 |
aataatcaagaaattagc |
20153493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 29582 - 29312
Alignment:
| Q |
18 |
catcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa |
117 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29582 |
catcattaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttctaccacctccggattagtaatgtccgaattaggtagaataatcat |
29483 |
T |
|
| Q |
118 |
acaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgggttttaaggtatgacaaagt------agtataaaagtttagataa |
211 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
29482 |
acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtgagagtataaaagtttagataa |
29383 |
T |
|
| Q |
212 |
tagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29382 |
tagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat |
29312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 20001119 - 20000852
Alignment:
| Q |
18 |
catcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
20001119 |
catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataatcaa |
20001020 |
T |
|
| Q |
118 |
acaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgggttttaaggtatgacaaagt------agtataaaagtttagataa |
211 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
20001019 |
acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtgagagtataaaagtttagataa |
20000920 |
T |
|
| Q |
212 |
tagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
20000919 |
tagttctcatctatcctcttgatcccttgattcacactcaccccaaa---cttagcaataaaagtgatgat |
20000852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 20040453 - 20040615
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| | | ||||| |||||||| ||||||||||| || ||||||||||| |
|
|
| T |
20040453 |
catcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaacctagttttctaccacctctggattagtaatatctgaattaggtag |
20040552 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatg |
171 |
Q |
| |
|
||||||||| |||||| || ||| |||||| |||||||||||||||||| |||| |||| |
|
|
| T |
20040553 |
aataatcaagaaattagtagtattgactctccactcatattggtaattgtgagaagggccatg |
20040615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 21855160 - 21855323
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| ||||||| |||||||||| | ||||| ||||||| |||||||||||| || ||||||||||| |
|
|
| T |
21855160 |
catcaccaccatcatcaccatcattgtgtacctgtaggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtag |
21855256 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgggtt |
175 |
Q |
| |
|
||||||||| ||||||| || ||| |||||| |||||||||||||||||| ||||| ||||||| |
|
|
| T |
21855257 |
aataatcaagaaattagcattattgactctccactcatattggtaattgtgagaagggttatgggtt |
21855323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 171
Target Start/End: Complemental strand, 17619571 - 17619412
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| | ||||| ||||||| |||||||||||| || ||||||||||| |
|
|
| T |
17619571 |
catcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtag |
17619475 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatg |
171 |
Q |
| |
|
||||||||| ||||||| || ||| |||||| |||||||| ||||||||| |||| |||| |
|
|
| T |
17619474 |
aataatcaagaaattagcattattgactctccactcatattggaaattgtgagaagggccatg |
17619412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 51937 - 52216
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51937 |
catcatcatcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggaatagtaatgtccgaattaggtag |
52036 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgggttttaaggtatgacaaagt------agtataaaag |
202 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||| |||||| ||| |
|
|
| T |
52037 |
aatagtcaaacaattagctctaataattctccattcatattggtaattgtgagtagggtcatgggttataaggaaggacaaagtagtaagagtatataag |
52136 |
T |
|
| Q |
203 |
tttagataatagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat |
282 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| |
|
|
| T |
52137 |
tttagataatagttttcctctatcctcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat |
52216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 23712100 - 23712370
Alignment:
| Q |
18 |
catcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23712100 |
catcatcaccatcatcttgtacctgtgggttaggaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa |
23712199 |
T |
|
| Q |
118 |
acaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgggttttaaggtatgacaaagt------agtataaaagtttagataa |
211 |
Q |
| |
|
| |||||| |||||| || |||||| |||||||||||||||||||| ||||||||||| ||||| | |||||||| |||||| |||||| ||||| |
|
|
| T |
23712200 |
aaaattagttctaataatcctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataa |
23712299 |
T |
|
| Q |
212 |
tagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat |
282 |
Q |
| |
|
|| || |||||||||||||||||||||||||||| |||||||| |||| ||||||||| |||||||||||| |
|
|
| T |
23712300 |
taattttcatctatcctcttgatcccttgattcacactcaccctaaacctcttagcaacaaaagtgatgat |
23712370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 20446229 - 20446386
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||| ||||||| |||||||||||| || ||||||||||| |
|
|
| T |
20446229 |
catcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccaccttcggattagtaatatctgaattaggtag |
20446328 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtaggg |
166 |
Q |
| |
|
||||||||| ||||||| || ||| |||||| |||||||||||||||||| |||| |
|
|
| T |
20446329 |
aataatcaagaaattagcattattgactctccactcatattggtaattgtgagaaggg |
20446386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 21282294 - 21282458
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| | |||||| ||||| |
|
|
| T |
21282294 |
catcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatattcgaatttggtag |
21282393 |
T |
|
| Q |
109 |
aataatcaaacaa-ttagctctaatgattctccatccatattggtaattgtgagtagggtcatgg |
172 |
Q |
| |
|
||||||||| ||| ||||| || ||| |||||| |||||||||||||||||| ||||| |||| |
|
|
| T |
21282394 |
aataatcaagcaatttagcgttattgactctccactcatattggtaattgtgagaagggttatgg |
21282458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 158
Target Start/End: Original strand, 18487447 - 18487596
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||| |||||||| |||||| |||| || ||||||||||| |
|
|
| T |
18487447 |
catcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctcaggattaataatatctgaattaggtag |
18487546 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgt |
158 |
Q |
| |
|
||||||||| ||||||| || ||| |||||| ||||||||||||||| |
|
|
| T |
18487547 |
aataatcaagaaattagcattattgactctccactcatattggtaattgt |
18487596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 23602024 - 23602173
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| || ||||| ||||||| |||||||||||| || ||||||||||| |
|
|
| T |
23602024 |
catcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataa---aagttttctaccaccttcggattagtaatatctgaattaggtag |
23602120 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgag |
161 |
Q |
| |
|
||||||||| ||||||| || ||| || ||| |||||||| ||||||||| |
|
|
| T |
23602121 |
aataatcaagaaattagcattattgactcgccactcatattgggaattgtgag |
23602173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 24939360 - 24939200
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| || ||||| ||||||| || ||||||||| || ||||||||||| |
|
|
| T |
24939360 |
catcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataa---aagttttctaccaccttcgaattagtaatatctgaattaggtag |
24939264 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgg |
172 |
Q |
| |
|
||||||||| ||||||| || ||| || ||| |||||||| ||||||||| |||| ||||| |
|
|
| T |
24939263 |
aataatcaagaaattagcattattgactcgccactcatattgggaattgtgagaagggccatgg |
24939200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 24218659 - 24218516
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||| ||||||||| ||||| ||||||||||| ||||||||| | ||||| |||| ||||||||||||||| || ||||||||||| |
|
|
| T |
24218659 |
catcaccaccatcattaccatcattgtgtacatgtgggttagtgccaacataat---agttttctaccatctccggattagtaatatctgaattaggtag |
24218563 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaat |
155 |
Q |
| |
|
||||||||| ||||||| || ||| |||||| |||||||||||| |
|
|
| T |
24218562 |
aataatcaagaaattagcattattgactctccactcatattggtaat |
24218516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0485 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0485
Description:
Target: scaffold0485; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 11297 - 11568
Alignment:
| Q |
18 |
catcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaatttt-ccaccacctccggattagtaatgtccgaattaggtagaataatca |
116 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||| ||||||||||||||||| |
|
|
| T |
11297 |
catcaccaccatcaccttgtacctgtgggttagtaccaacataaagcaaatttttccaccacctccagattagttatgtccggattaggtagaataatca |
11396 |
T |
|
| Q |
117 |
aacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgggttttaaggtatgacaaagtag------tataaaagtttagata |
210 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||| | |||||||||| |||| |||| |||||| |
|
|
| T |
11397 |
aacaattagctctaataattctccactcatattggtaattgtgagtatggtcatgggttctaaggaaggacaaagtagtgagattatataagtctagata |
11496 |
T |
|
| Q |
211 |
atagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat |
282 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||| |
|
|
| T |
11497 |
atagttcccctctatcctcttgatcccttgattcacactcaccccaaactttctagcaataaaggtgatgat |
11568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 24501148 - 24500997
Alignment:
| Q |
20 |
tcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaac |
119 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
24501148 |
tcatcaccat-attgtgtacctgtgggttagtgccaacataaatcaagttttctaccacctccggattagtaatgtccgaattaggtagaataatcaagc |
24501050 |
T |
|
| Q |
120 |
aattagctctaatgattctccatccatattggtaattgtgagtagggtcatgg |
172 |
Q |
| |
|
||||||| || ||| |||||| ||||||||||||||||| |||| ||||| |
|
|
| T |
24501049 |
aattagcattattgactctccactaatattggtaattgtgagaagggccatgg |
24500997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 25339499 - 25339661
Alignment:
| Q |
18 |
catcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa |
117 |
Q |
| |
|
||||| ||||||||| ||||| |||| |||||| ||||||||||| |||||||||||||||||| ||||||| ||||||| |||||||||||||||||| |
|
|
| T |
25339499 |
catcaccaccatcatcatgtacatgtgagttagtgccaacataaagaaaattttccaccacctccagattagttatgtccggattaggtagaataatcaa |
25339598 |
T |
|
| Q |
118 |
acaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgggttttaag |
180 |
Q |
| |
|
||||||||| ||| ||| |||| ||||||||||||||||||| ||| |||| ||| |||| |
|
|
| T |
25339599 |
acaattagccctattgaccttccactcatattggtaattgtgagttgggccatgagttctaag |
25339661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0566 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: scaffold0566
Description:
Target: scaffold0566; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 10 - 171
Target Start/End: Complemental strand, 1436 - 1275
Alignment:
| Q |
10 |
atcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtaga |
109 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||| ||||||||| |||||||||| || |||||||||||| |
|
|
| T |
1436 |
atcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccagattagtaatatctgaattaggtaga |
1337 |
T |
|
| Q |
110 |
ataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatg |
171 |
Q |
| |
|
|||||||| ||||||| | ||| |||||| ||||||||||||||| || ||||||||| |
|
|
| T |
1336 |
ataatcaagaaattagcataattgactctccactcatattggtaattgttagaagggtcatg |
1275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0222 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0222
Description:
Target: scaffold0222; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 18637 - 18509
Alignment:
| Q |
30 |
cattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctct |
129 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| || |||||||||||||||||||| ||||||| | |
|
|
| T |
18637 |
cattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaagaaattagcatt |
18538 |
T |
|
| Q |
130 |
aatgattctccatccatattggtaattgt |
158 |
Q |
| |
|
| ||| |||||| ||||||||||||||| |
|
|
| T |
18537 |
attgactctccactcatattggtaattgt |
18509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0220 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0220
Description:
Target: scaffold0220; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 172
Target Start/End: Original strand, 11741 - 11860
Alignment:
| Q |
53 |
ccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccatccatattggt |
152 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||| |||||||| || ||| |||||| ||||||||| |
|
|
| T |
11741 |
ccaacataaaccaagttttctaccacctccagattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggt |
11840 |
T |
|
| Q |
153 |
aattgtgagtagggtcatgg |
172 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
11841 |
aattgtgagaagggtcatgg |
11860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0220; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 9709 - 9751
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagt |
51 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9709 |
catcaccaccatcatcaccatcattgtgtacctgtgggttagt |
9751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0113 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 38017 - 38177
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| || ||||| ||||||| | ||||||||| || ||||||||||| |
|
|
| T |
38017 |
catcaccaccatcatcaccatcattgtgtacctgtgggttagtgccaacataa---aagttttctaccaccttagaattagtaatatctgaattaggtag |
38113 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgg |
172 |
Q |
| |
|
||||||||| ||||||| || ||| || ||| |||||||| ||||||||| |||| ||||| |
|
|
| T |
38114 |
aataatcaagaaattagcattattgactcgccactcatattggaaattgtgagaagggccatgg |
38177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 17187 - 17034
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||||||||||||| ||| ||| ||||| |||||||| | ||||||||| |||||||||||||| |
|
|
| T |
17187 |
catcaccaccatcatcaacatcattgtgtacctgtgggtta----------aaaccaagttttctaccacctctgtattagtaatatccgaattaggtag |
17098 |
T |
|
| Q |
109 |
aataatcaaacaattagctctaatgattctccatccatattggtaattgtgagtagggtcatgg |
172 |
Q |
| |
|
||||||||| |||||||| || ||| |||||| |||||||||||||||||| |||||||||| |
|
|
| T |
17097 |
aataatcaagcaattagcattattgactctccactcatattggtaattgtgagaagggtcatgg |
17034 |
T |
|
Back To:
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Target: scaffold0012 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 12828 - 12930
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtag |
108 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| || ||||| ||||||||| |||||||||| || | |||||||| |
|
|
| T |
12828 |
catcaccaccatcatcaccatcattatgtacctgtgggttagtgccaacataa---aagttttctaccacctccagattagtaatatctaatttaggtag |
12924 |
T |
|
| Q |
109 |
aataat |
114 |
Q |
| |
|
|||||| |
|
|
| T |
12925 |
aataat |
12930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 8718 - 8821
Alignment:
| Q |
8 |
acatcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggta |
107 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| ||||||||||| ||||||||| || ||||| ||||||||| |||||||||| || | ||||||| |
|
|
| T |
8718 |
acatcaccaccatcatcaccatcattgtgtacatgtgggttagtgccaacataa---aagttttctaccacctccagattagtaatatctaatttaggta |
8814 |
T |
|
| Q |
108 |
gaataat |
114 |
Q |
| |
|
||||||| |
|
|
| T |
8815 |
gaataat |
8821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 8656 - 8709
Alignment:
| Q |
9 |
catcatcaccatcatcaccatcattttgtacctgtgggttagtaccaacataaa |
62 |
Q |
| |
|
||||| ||||||||||||||||||| |||| |||||||||||| |||||||||| |
|
|
| T |
8656 |
catcaccaccatcatcaccatcattgtgtatctgtgggttagtgccaacataaa |
8709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1184 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1184
Description:
Target: scaffold1184; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 537 - 571
Alignment:
| Q |
42 |
gtgggttagtaccaacataaagcaaattttccacc |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
537 |
gtgggttagtaccaacataaagcaaattttccacc |
571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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